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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004269 ID=TCONS_00004269|Name=TCONS_00004269|organism=Clytia hemisphaerica|type=transcript|length=906bp
GTTGAGTTCACAAATGGAGCTTGCATCAAACAAGTGGTGACCACGCCTTC
TCCCACGCCCACAATCCTTCGCGTTGGATGTTTCCAAGATCAAGGCTACA
TCAACGGTCGCCGGCCGTTCACCCATCGTGGAGATTTAAGTGGTTTAGCC
ATCTCCACCAATCAGCTTTCGGAGCTTCGCGATCATTATTATGACGTAGT
TAGGTATTGTGGATCGTTAGCAAGGAATAATGGCTTCAAGtttttcgcCA
TCCAGCAATATTATGAATGTTGGACAGGACCGACTTTCGATGTTCAGTAC
AGTCGAGATGGAGAAAGTAAGGGTTGCTGGCCCGAACAACAAATGGGGTA
CGGCCCTCATATCGTCGGCCAATATTTGTCGAATATGGTGTACCAGTGGA
GTGATTTGTAATAATTTTTCCCAAGCTGACTATATTGAATAAGCTGTTCT
ATGCGCACCAAAATATGTGGTGTCAGATGAAACAGCAGAAAATATGAGAT
ACAATTGATGCTATAAGAAACATTAAGAAGAAGACATTGTGCATCTTGTT
GATGGCTGGTGGCTTGATTGGCTGTAATCATAAACTGGTATACCAATGGT
TATCTCTATAACACTATTCTTTCACTAGAATTTGAGCATCGTTGTACATT
ATTTTGAGgggaaaattcacaaaaataatgCTCGTACACTTTTTTTCATA
ACTCTGAAATTAAANGaaatttttatcgtttttttttgttttttttctac
atgagggcacgcaaccctcgaaaaaggtcaaatcctcgatatgcttgtta
gcaaaaaatcgttttcctcaaaattttcttcacaaatttacaaacttgga
agaggtattggaaaaatttttatctaaagtgatcgcttattgttaaaagc
ttttca Run BLAST on NCBI transcript from alignment at sc0000041:228493..230683- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004269 ID=TCONS_00004269|Name=TCONS_00004269|organism=Clytia hemisphaerica|type=transcript|length=2191bp|location=Sequence derived from alignment at sc0000041:228493..230683- (Clytia hemisphaerica)
GTTGAGTTCACAAATGGAGCTTGCATCAGTAAGCATTTCTTTCTTTATCT
TTGTGCTTTACTAAGTAATGTTCAAACAGGCTCCATTGTACAAACTTGTG
AATAAAGTCAAGGGTTAATCAATTGATCAAACTATTTCAATACGCTTGGA
TTATGTCAAAACCTTGTACAATCTGTGAATCGAAAAGATTTCACCAATCC
AGAACATTGAATAATCATAGCATTAAGCATATTTGAGTCTACAAAAAGCT
GATCTTCAAAGCTTTTGAAAAATATTAAAAGTACCGTGCACAGTCAGTTT
TTTTCTTGTTGACGAGGGCCTGTGTTAAAGCTTTTTTGAGCTAGTTTTAC
TGTAGGACAACTTGAATAAGCACACCACCTTTTCGTTTCAGAACAAGTGG
TGACCACGCCTTCTCCCACGCCCACAATCCTTCGCGTTGGATGTTTCCAA
GATCAAGGCTACATCAACGGTCGCCGGCCGTTCACCCATCGTGGAGATTT
AAGTGGTTTAGCCATCTCCACCAATCAGCTTTCGGAGCTTCGCGATCATT
ATTATGACGTAGTTAGGTATTGTGGATCGTTAGCAAGGAATAATGGCTTC
AAGGTATAATTTAATACTTCAATTTATCCCAAGTTCTTTAATTTCAACAG
ATTTTGAATATTCAAGTTTTTTGTCATTGCTGCGTGTTTCAATTGTCTTT
GAAGTTCATTCTATGGATCCCAAGGATTCTGCTCATCCTCAAGCGAAAGG
AGTTTCTTATATAGGAAATACTAGATGGTTCCCATCGTCGCAAACGCCGG
TTAACGGTTTTGCTTGCACATCAAAAGCCTTTAAAATACTATAATGTGGG
TTAATGCCTGACATCGTTTTGGCTTAAAATGCCGAAAACAATAATATAAA
ATTATACTTCTAAACTTTCTACATTAGTCAAAATTTTGTGTCTGTAAGCC
TCGATGATATGTCTTTTTAAGATAACCGAAGTTTGTGTTCAATGAAATGC
CATAGTGACCCTGTCAAAATTATGGAGGGTACCCGTCGTTACAGACGCCC
AAAGGTGTCTGAGGTGGTGAGAGGGTTGCTTCTAGGAAAGAAAAAGCCTT
AGTTGTGAAGGAGAGGCTCGCGCTTTGCGATTGAGCACTGAAGGGTTTCC
CGTTTGTTGGGTTCACATGCGGACAGCTTAAGACCGGCGCATATGCAATG
CAACCAACATTGAAACCTTTTTAAATAATGTTAGACAAAGTTTAATCATC
AAACAACAATGTTGGATTTTGTTGCTTGTGTTGATATAGAATAATTCGAA
ATCGTGCAACAAAAATTTCACACCTTTTTATTTGAAACTTTGTGACGTCG
CAGTACTTTTTCATGAAATTGAGGTCAGAACTTTTTTCGTTTACCAGTAG
TGGCAAATTTTATACAACTTTTGTCTACATTACGTCATGAATATCATGAA
TAGATATATAATATTATAGACTCATACTCTGTGGATCCAGTTTGAAAATG
CTCTCACCGATCTCCTTTTTTTCAGTTTTTCGCCATCCAGCAATATTATG
AATGTTGGACAGGACCGACTTTCGATGTTCAGTACAGTCGAGATGGAGAA
AGTAAGGGTTGCTGGCCCGAACAACAAATGGGGTACGGCCCTCATATCGT
CGGCCAATATTTGTCGAATATGGTGTACCAGTGGAGTGATTTGTAATAAT
TTTTCCCAAGCTGACTATATTGAATAAGCTGTTCTATGCGCACCAAAATA
TGTGGTGTCAGATGAAACAGCAGAAAATATGAGATACAATTGATGCTATA
AGAAACATTAAGAAGAAGACATTGTGCATCTTGTTGATGGCTGGTGGCTT
GATTGGCTGTAATCATAAACTGGTATACCAATGGTTATCTCTATAACACT
ATTCTTTCACTAGAATTTGAGCATCGTTGTACATTATTTTGAGGGGAAAA
TTCACAAAAATAATGCTCGTACACTTTTTTTCATAACTCTGAAATTAAAN
GAAATTTTTATCGTTTTTTTTTGTTTTTTTTCTACATGAGGGCACGCAAC
CCTCGAAAAAGGTCAAATCCTCGATATGCTTGTTAGCAAAAAATCGTTTT
CCTCAAAATTTTCTTCACAAATTTACAAACTTGGAAGAGGTATTGGAAAA
ATTTTTATCTAAAGTGATCGCTTATTGTTAAAAGCTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004269-exon-sc0000041-1575043694:230656..230683 | TCONS_00004269-exon-sc0000041-1575043694:230656..230683 | Clytia hemisphaerica | exon |
| TCONS_00004269-exon-sc0000041-1575043694:230081..230292 | TCONS_00004269-exon-sc0000041-1575043694:230081..230292 | Clytia hemisphaerica | exon |
| TCONS_00004269-exon-sc0000041-1575043694:228493..229158 | TCONS_00004269-exon-sc0000041-1575043694:228493..229158 | Clytia hemisphaerica | exon |
| TCONS_00004269-exon-sc0000041-1510915933:230656..230683 | TCONS_00004269-exon-sc0000041-1510915933:230656..230683 | Clytia hemisphaerica | exon |
| TCONS_00004269-exon-sc0000041-1510915933:230081..230292 | TCONS_00004269-exon-sc0000041-1510915933:230081..230292 | Clytia hemisphaerica | exon |
| TCONS_00004269-exon-sc0000041-1510915933:228493..229158 | TCONS_00004269-exon-sc0000041-1510915933:228493..229158 | Clytia hemisphaerica | exon |
| TCONS_00004269-exon-sc0000041-1491911889:230656..230683 | TCONS_00004269-exon-sc0000041-1491911889:230656..230683 | Clytia hemisphaerica | exon |
| TCONS_00004269-exon-sc0000041-1491911889:230081..230292 | TCONS_00004269-exon-sc0000041-1491911889:230081..230292 | Clytia hemisphaerica | exon |
| TCONS_00004269-exon-sc0000041-1491911889:228493..229158 | TCONS_00004269-exon-sc0000041-1491911889:228493..229158 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:228493..230683 - |
Blast
The following BLAST results are available for this feature:
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