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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004263 ID=TCONS_00004263|Name=TCONS_00004263|organism=Clytia hemisphaerica|type=transcript|length=1411bp
CGAAGGGTTAAGAGaataaaaaaaatgcTGTATTGCAATTCGGTTAGATG
ATTCCGAAATTGCTGGCCAGTGAATTTTCTCCTAAAGTGAAAGCTTACAA
TCtgattgaagaaaatattttgaaacaaaGACTTGATGTTTATCGTCGCC
AAGAGAAAAACAACTTGAGAATGATCGAGAAAGATTCGAAACgatttcaa
gaaaaacttttACAAACTTCCCTTAAAACGAGTGAAGGGTTCGAGTACGG
CGAATTGACAGACGAACTTTTAATGGAGGAGAAAATCACAGAAGCGTCGA
ACCATCAACATCATAAACAGAAAAacggaaaattgaaaaaacgacgcaaa
aagaaatcgaaaacgCGAGACACTGCAATAACACACGAGACTTTTATTTA
TAAAAGCGAGCATGAAATGGAAAATTCAGTAAACGAAAAACGATATCGTA
ATTCGCATGGATTTTTACCAAAATTGAACAATATTAGCGTCAACGCTGAG
CCAACGAAACCAGCTAAATCTTCAGACAATTTATCGCTGCCACCAATATT
GGGGGCTTCTCTGACTTCCAGTGTTTCATTGCCAAGTTTGAATAAATTCA
ACAAATATGGGAAACTCCAATGACAGAAATACGTTCGACTTTAATTGTTG
GTGGAgatgacatttttttaaattgcggAATACAGTTTTGGAAGTTTTTA
AACCTCATCCCGTAGCTTGtcatttgcaaaaaaatgcctCCATAAGCGAA
AAAAGCGTTTGATAGTTGGCTTTTACTCTCGGCTGCCTAGTAATTAAGGG
AGGAGGGTGAAGAAGAAGAATacagtaaatgCACAAAAAGGAACTTTTAA
AAACGTTTTCCCAGGAATtaaatggaaaatttcaaaaaatctgcgGGGAC
GCTTTTCATTAGTTACCCGAGAGTGGATGTCAAATTACGAGAAGTGGAGC
TTATCATTGAAAACCagtttttggtttattttgaaaactttaggcgtaca
aactttcgcgagtaaaaacaaaagattttttcgtcaaattggcgagagaa
aaaaatgtcgtaaatttcgcgattttttgacttcgcgaaagtttctgttc
gcgtaagtttgtacacctaaaTTGATGATTTTAATTGGAATATGTTCTTG
AGAAAAGTTCGCGGCCCAAACAGTATGATACTTTTGTAAATAGGATATTA
TGAATTTTCTCTCAAACTTTCTCTCAAAGAGAGGGAAAATAAGTAGGAGG
TGTAAATAGATGTAATGAAATCTTGTACGAAATGAAACGACTCCTCTAAA
CGGTTGAAAAGGAATTTCACAAAGCGTCGAccttttgtttgaaaacgaga
tGATATCAGCAAAGGATCAGCTTAACATTTTAACCTTCCCTTGTTACAAA
GAGTGTCTTTG Run BLAST on NCBI protein sequence of TCONS_00004263-protein >TCONS_00004263-protein ID=TCONS_00004263-protein|Name=TCONS_00004263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MIPKLLASEFSPKVKAYNLIEENILKQRLDVYRRQEKNNLRMIEKDSKRF
QEKLLQTSLKTSEGFEYGELTDELLMEEKITEASNHQHHKQKNGKLKKRR
KKKSKTRDTAITHETFIYKSEHEMENSVNEKRYRNSHGFLPKLNNISVNA
EPTKPAKSSDNLSLPPILGASLTSSVSLPSLNKFNKYGKLQ Run BLAST on NCBI transcript from alignment at sc0000041:100413..106909- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004263 ID=TCONS_00004263|Name=TCONS_00004263|organism=Clytia hemisphaerica|type=transcript|length=6497bp|location=Sequence derived from alignment at sc0000041:100413..106909- (Clytia hemisphaerica)
CGAAGGGTTAAGAGGTGAGTGAATAAAATACTCTTTTTAAGAACCAGCAA
ATTTTTTTTGAGGATCGGCCGTTCTTATTTCTGTCACACTTTTAGCCTTT
TTAGCCCTATGTTCTTATTCTGTTCAAATTAAAGGCAAATTTGGGTTATT
TGTGGCTTAATTTGCCGTTTGTCCCTTAATTTATCGAAAATGCAACCATT
CTATACTTAGGGTTTTTCTTAAATTGTTCTTATTTTTTGGCATTTTTGAG
CCTCACTGTTCTTATAAAATTGTTCTAAAAAGAAGAAGAGTGCATTCAAA
ATAATTTTCATTTTATTTAGTCTCTGACCTTCTCAAAGCATGCTACAAAT
TCTTCAAGAATTTATACAGTAACTATATTATGAGCAACACATATATTTGC
AATAAGAATTGGTTATTTTGATATATGACGTAGGCAAGTCAGTAAGTATT
ACTAACTTTTCACTGATATTTTTCATTTCTTCTTCTCTTCTGATTGAAGC
GTCGTGATTTGTTCTCTTCTTATTTAGCTCTCATACGTAAATTGTTGAAA
AATACAACTTTTACTAAAGTACGGTAATCAAAAGCCTTAAAACAAAATTC
ACAAATAAAATCTTTTTTTCAAAGAATAAATTTCCTTTTTTTATAGAGAC
GGGCTCTTATCTGATCAGAAAAAAAAACGAAGAAAAACGGGACAATCTCA
TGAAGTTTCATCTGAGGAAGGAATTCGAGATGAACATTTTATGCGTTAAA
TTGTCAATTTTTATTTTGTGAGATTTTTTCTTTTGTAAGAGGTCTGGTGA
CGAGGTTTGTTACTTTAGTACTAGCCTATACTAGACGTCACCCGCGTTTT
TTTTACGCAATTAACGTCTATTCCACTTTGCGACTTTTTCGAATGTTTTG
AGCCCGGGTTTTCGGGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGCACTTGAAAGGCTTC
TATTTTTCGAAAATCGTCAAAGTGGAACTCACTAAGAAACGAGATAAAAA
ATCCCGGTTTTTAGTGAGGTGCTCGCTACTTTAGTACTATCTTTTCGTTG
GATTGCGCAAATTCCATCTCTTTATTTACTCAACAAGAAACTTTATCTGG
TCGTAAAATTTTAACCAACTGTGAATTATTTGATCATATCTGTATACATA
TTATACGAGTGAGAGAAAGTGTACTTTTGGGGGGCTTTTGTATATATTGG
CACTCTTTGTTTGCTGTTGTACGTTTTAGTTCAAATTTGCCAAAAATTCT
TGATGAAAAGTATTACCAGTTTGTTAACAAGGAGAATTGTTACGAGGTTG
ATTTAAAATTTGGTTGATTTGTTTTAGAAATCATTAAGGATTTCTTGACG
AGCTATATATTTATTGCACTTTGTTGTCCTTAAATGAAGGAGACCGGCGA
ATTGCCGTTTGGGAAACTCCAAAATCTTGAATCAAAAACGACGCGGTGGA
GACCATCCAATCTTTCGTTTTCGTGGCCCAATTAAACTAGAAAGTCTTTC
GTACCGATGTACTATTTGATATTTTAGTAAACACCCATGGTAATTTTAGT
ATTCGGTACCCTTTCAACCAGGGGGTGTTAACACCCCCTGTTTCAACACA
ATGGTACATTTTTTGCTATTTTACAATACTGTTAATAAACACCCTTGTAT
CAGATGAGATTTTAGTACTGATCGCTCTGCCACCCCTGTTTGATAGAGAC
TATTTTATTTATTTCGTTCGTTTTGGTGTCCCGTGTATTTTGATTAGGTG
GAACATTTAGTCACCTATTAGTACCTTTGTTGGTTCAAAAACATTTTAAT
AAATGTCTAGCCTTTATTATTGCTTTTCCCCATTCTGAACTTTCGACTGT
ACAAAATGGCCTTGATGACGTCATTATTTATTCAACTGTTGTTTTAGAAC
GATACTGTAAATTTTCTTGAAATTTGATTTTCATGTTAACGTCAGTTTGG
TCAATACAAAGCTTTTCTTTGAAAGGTGTTGATACATTTTTTGTATTCAG
GTTGCAAACGTCTGAGAAAAGAGTAATGACAAAGAAATCTTTTGAAAAAC
AGTTTCAGAAGTTCCTGAATTCAAACTTGGTAGGACCCCTTTTGTTCCAC
GGATTTAAGAAAACAAAAATGGTTTATCACTCAAACATTGAAAAATTTGA
ACAGGAAGTTTCAAATGTAACAATTTTTATTTTGTTGAACGTGGTGTTGA
GTTTCAAATTCTTGAAAAAAAGTCCTCGGTGAGGAGGATTTCTATTTCAT
GTTTTGTTGATGTACCTTTTGTACCTTTGACCATAGGTCTGTTTCACATC
AAGCTGTACACGCTGTATAATAAGTTATTGAACATTTGAACATTAAAGCG
CTGCATGTTTTATCGTGACAATATCAATATGGGATAAAATTTCATGGTCA
TATATCGTTCACCAAACAATTTCAGCGATTTTGTAAATTTTATTAAAAGT
TTGACGTGATGTTTGAGACGTGCTTTCGCCATTTCACTGTGAGGATCAAA
TTTTCTTCCAGCCAAAATTTGAGATTAAGATGTAGTTTAATGCCTCTCTA
TTACTAATACTTAAAGAATCGTCCAAGGTATTAGCCAGGGATCATGTTCT
TTCGTTGGACAGGCACTGTCAGTTTGTATTTTGAAACAAAACAACACGAG
TGGTCTGTTTTAATCACTCTAAGGTCACTGTTATGGCACTTGGGACAATT
TTTCTTTTTATTTCTTCTGAAATTGTCATCTAGAACTGACAGTTTGGATT
GATCCACACAATTTCTTGTATGTTTCTTGCTAGAAACTTTCGATTTAGTT
AGTGCCAAAGAAGTTGGGTTGTTTTCACTGCAGTAGATTTGAGTTAGTAT
TTTCGGTCTCTTATTCACTTGGTTTCTTTGTTCACTTTTTTTGGGATTCC
ACATAATCTCGAGGAGATAGAAGTGGAAGGATTGGATATAAAGAGAATGG
ATGGTGTCAGTCTCACGTGATGACGTGATAGAGACTTTTTTGCAGCGTGA
TTACGTGATTTGGTAATTTTTTCTTCGTGATTGCGTGATGAGAGGTCAAT
TTTATCGTGATTTGAAAGATTTTTGAGTCGTGATACGTGATTTTGACTTT
TTCAAAAGGATGCGTGATTGTCCAATTTTTTTGTTGATTTGCGTGATCGT
GATTGAAGACAAAAAATTGCGTGATATCGTAATCAGAGTTACCGCTGGGG
GACCTCCTATAGGGTAAAGTTATAGTTTTGTTTTAGTTGTTCGATAAAAC
ATAAGAATGATAATTTTTGTTGTCGCCAAGCGGATGTTTTATGTTGCAAA
TCGGTGGTTTTTTAATTCTGCCCCTTTTGGAGGCCGTTTTGACCACAGCT
CTGTTGAATGCAGTTTGTTTGCTTGGTTTGAGTAAACGAAGTTTGTAGCA
CACTCAACTGAGGATGGAAGTAGACGCGATTACCATCTTTATGTCTCTAT
TCATGAGATTCCACTCCTTTCCACACGCCCTTATTTACTTTTTGGTGCTT
GGTGTTCGGATAGTGGTTTTGATGTTTGTTCTTGTGAACAGTGTAAGTAA
AAGACACTCGTTTCCTTCTCAGATTGACTGTGTGTGTTTTTGTTTTTCTG
TATAATCGTTTCCGAGAGGAGACTTGGATAATTGTCGCTGGTAGTGGTAA
GCTCTTTTCTGATGATTTCTGATGAGTGGTAAAAAGGATAGATATACCAC
GAGGATTGGTTGTGATTGTTCCTACCTTTTTGATAAAAAGATCATCAGTC
ACATACTCACAATTTCATTGATAAAAAATCTGCACTTTTGCCGACGAATA
TTTTCAGCAAATTTTTCTGATAAAGTACACTTTTCTTTGAGCCAATAAAA
TTTTTCTAAGACTCGGCTGTTCTTATTTTTTTTGGAACTTTGAGCCTAAA
ATTGTTCTTATCCTGTTCTTATTTCCAATTTTTTTTTTACTTGAAAGGGT
GTATTTTAGGTCGTTATACCCAATTTTACTACTTTCACCTGCTTTCCACC
CCTAAATTGCTTGAAATTGAGTAATTTAAGGCTCAGTTTTTTAATTGTTC
TTATTTTTTGGTGATTTTGAGCCTCATTGTTCTTATGAAACTGCTCTTAT
AAAAGAAAACAGTGTCTGATACACGAGTATGAATGCGACGGTTTTTGTTT
TGAATTGCGAAGAAATGAGACATGTGATGGTGATAAAATTTTACCTTAAC
GAGGTGAAAGATATAATATATCGTTATATTTTTGTTAAGTGGACTTTTTT
TCTCTTGTTGTTTTTATCGATATTTTTTGGCATTTAATTGATGGCATTTT
CGAAAGTATCACATTTTTGAGATGTTTTTCTTTAAAAGTCTCTGACCAGT
TCTAAATGATGAATCACACAGTTTATTTGGAATTGCGAAGAAATGAGAGA
AGAATTTTTTGAAAATTTCGTCGAGTTTTCTAACTTGATTATGATTATTA
TTTTGTTTTGAAAGAAAAAGGGTAAGTATTTTGAGAAATAGCAGGGTTGA
AATGGCCAATCATGCTGCTTGGAATTAAATATCTCACAATTCTCTTCTTT
TCAGAATAAAAAAAATGCTGTATTGCAATTCGGTTAGATGATTCCGAAAT
TGCTGGCCAGTGAATTTTCTCCTAAAGTGAAAGCTTACAATCTGATTGAA
GAAAATATTTTGAAACAAAGACTTGATGTTTATCGTCGCCAAGAGAAAAA
CAACTTGAGAATGATCGAGAAAGATTCGAAACGATTTCAAGAAAAACTTT
TACAAACTTCCCTTAAAACGAGTGAAGGGTTCGAGTACGGCGAATTGACA
GACGAACTTTTAATGGAGGAGAAAATCACAGAAGCGTCGAACCATCAACA
TCATAAACAGAAAAACGGAAAATTGAAAAAACGACGCAAAAAGAAATCGA
AAACGCGAGACACTGCAATAACACACGAGACTTTTATTTATAAAAGCGAG
CATGAAATGGAAAATTCAGTAAACGAAAAACGATATCGTAATTCGCATGG
ATTTTTACCAAAATTGAACAATATTAGCGTCAACGCTGAGCCAACGAAAC
CAGCTAAATCTTCAGACAATTTATCGCTGCCACCAATATTGGGGGCTTCT
CTGACTTCCAGTGTTTCATTGCCAAGTTTGAATAAATTCAACAAATATGG
GAAACTCCAATGACAGAAATACGTTCGACTTTAATTGTTGGTGGAGATGA
CATTTTTTTAAATTGCGGAATACAGTTTTGGAAGTTTTTAAACCTCATCC
CGTAGCTTGTCATTTGCAAAAAAATGCCTCCATAAGCGAAAAAAGCGTTT
GATAGTTGGCTTTTACTCTCGGCTGCCTAGTAATTAAGGGAGGAGGGTGA
AGAAGAAGAATACAGGTGCCAAATAAACGCCCCCCCCCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCCCCCCGGTAATTAGGTCCCCCCCGTTTATTTGATT
TGAAATTTTTTTCGAACCCCCCCGTTTATTCGAACCCCCCCGTTTATTTG
GCACCTAAGAGTAAATGCACAAAAAGGAACTTTTAAAAACGTTTTCCCAG
GAATTAAATGGAAAATTTCAAAAAATCTGCGGGGACGCTTTTCATTAGTT
ACCCGAGAGTGGATGTCAAATTACGAGAAGTGGAGCTTATCATTGAAAAC
CAGTTTTTGGTTTATTTTGAAAACTTTAGGCGTACAAACTTTCGCGAGTA
AAAACAAAAGATTTTTTCGTCAAATTGGCGAGAGAAAAAAATGTCGTAAA
TTTCGCGATTTTTTGACTTCGCGAAAGTTTCTGTTCGCGTAAGTTTGTAC
ACCTAAATTGATGATTTTAATTGGAATATGTTCTTGAGAAAAGTTCGCGG
CCCAAACAGTATGATACTTTTGTAAATAGGATATTATGAATTTTCTCTCA
AACTTTCTCTCAAAGAGAGGGAAAATAAGTAGGAGGTGTAAATAGATGTA
ATGAAATCTTGTACGAAATGAAACGACTCCTCTAAACGGTTGAAAAGGAA
TTTCACAAAGCGTCGACCTTTTGTTTGAAAACGAGATGATATCAGCAAAG
GATCAGCTTAACATTTTAACCTTCCCTTGTTACAAAGAGTGTCTTTG Coding sequence (CDS) from alignment at sc0000041:100413..106909- >TCONS_00004263 ID=TCONS_00004263|Name=TCONS_00004263|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at sc0000041:100413..106909- (Clytia hemisphaerica)
ATGATTCCGAAATTGCTGGCCAGTGAATTTTCTCCTAAAGTGAAAGCTTA
CAATCTGATTGAAGAAAATATTTTGAAACAAAGACTTGATGTTTATCGTC
GCCAAGAGAAAAACAACTTGAGAATGATCGAGAAAGATTCGAAACGATTT
CAAGAAAAACTTTTACAAACTTCCCTTAAAACGAGTGAAGGGTTCGAGTA
CGGCGAATTGACAGACGAACTTTTAATGGAGGAGAAAATCACAGAAGCGT
CGAACCATCAACATCATAAACAGAAAAACGGAAAATTGAAAAAACGACGC
AAAAAGAAATCGAAAACGCGAGACACTGCAATAACACACGAGACTTTTAT
TTATAAAAGCGAGCATGAAATGGAAAATTCAGTAAACGAAAAACGATATC
GTAATTCGCATGGATTTTTACCAAAATTGAACAATATTAGCGTCAACGCT
GAGCCAACGAAACCAGCTAAATCTTCAGACAATTTATCGCTGCCACCAAT
ATTGGGGGCTTCTCTGACTTCCAGTGTTTCATTGCCAAGTTTGAATAAAT
TCAACAAATATGGGAAACTCCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004263-exon-sc0000041-1575043694:106896..106909 | TCONS_00004263-exon-sc0000041-1575043694:106896..106909 | Clytia hemisphaerica | exon |
| TCONS_00004263-exon-sc0000041-1575043694:101345..102155 | TCONS_00004263-exon-sc0000041-1575043694:101345..102155 | Clytia hemisphaerica | exon |
| TCONS_00004263-exon-sc0000041-1575043694:100413..100998 | TCONS_00004263-exon-sc0000041-1575043694:100413..100998 | Clytia hemisphaerica | exon |
| TCONS_00004263-exon-sc0000041-1510915933:106896..106909 | TCONS_00004263-exon-sc0000041-1510915933:106896..106909 | Clytia hemisphaerica | exon |
| TCONS_00004263-exon-sc0000041-1510915933:101345..102155 | TCONS_00004263-exon-sc0000041-1510915933:101345..102155 | Clytia hemisphaerica | exon |
| TCONS_00004263-exon-sc0000041-1510915933:100413..100998 | TCONS_00004263-exon-sc0000041-1510915933:100413..100998 | Clytia hemisphaerica | exon |
| TCONS_00004263-exon-sc0000041-1491911889:106896..106909 | TCONS_00004263-exon-sc0000041-1491911889:106896..106909 | Clytia hemisphaerica | exon |
| TCONS_00004263-exon-sc0000041-1491911889:101345..102155 | TCONS_00004263-exon-sc0000041-1491911889:101345..102155 | Clytia hemisphaerica | exon |
| TCONS_00004263-exon-sc0000041-1491911889:100413..100998 | TCONS_00004263-exon-sc0000041-1491911889:100413..100998 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:100413..106909 - |
Blast
The following BLAST results are available for this feature:
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