TCONS_00004261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004261
Unique NameTCONS_00004261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2219

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004261 ID=TCONS_00004261|Name=TCONS_00004261|organism=Clytia hemisphaerica|type=transcript|length=2219bp
TGAATAAAAGTTTCTACCGGTAGGTATCTTTGttgaaaatcgaaagtgac
aaaGTCCACATTTTATCAGATTTGACTTCTTTTGCAAAAATCTTGCCAAA
CACCTAAAGTCTTTGTAGACTGAAGAAAATAAACAACAGTTTTGGACTCT
CACACAGTCACACAGCATTCTGTCAACAAGCAAGAAGTGAAGCAGCCAAC
AATCTTGTTTATAATGACAACTTTACCTGAGAAAGCGACAAAgttctttg
aaaatgtttctcTACTTCAATCATTTCCTGTATTCATTGGATACCTCCTG
ATGATATTATTGATCCCAGTTTGGAAGCGCATTCTTCCAGTTGCGAACAA
TTTGAAAATGATTATGATACCTTACAACATCATCTGTGTATTGTTGAGTT
TGGCTGCAACATTTCTTCTCTTCTATGGAGCTTTTTTGGGAAGTCATCTT
TATGCATACGAAGAGAACCAATACATTGTATATGGCATGGCAATTTACAC
TATCTCAAAGAATGTTGAATTGCTTGACACTGTTTTCATGATTCTACGAC
ATAAATATCGACAAATTTCATTCTTACATGTATTCCATCATTCCACCATT
CTTGTTTTGGGTAATTATGCATTTGTTTACACATGTTACCCACCCATAGC
TGTACCAGTCGGGCTCAACTCACTTGTACACGTCCCCCTTTATGCATATT
ATGCTAAAACAGCTATCTCACCTTCACTGCAAGTTTCATGGAAAAAAGCG
CTAACCATTTTTCAAATTGTCCAATTTTTATTTGACTTGGTTTTCGCGAC
TATAGGGTATTTGTATCATGGGTTttgtatttattcaatcatGTATGGTG
GTTCTATGCTGGTTTTGTTtagtaatttttattattttgcttACATCAAA
AAGAAGAAGACTGTTTAAAGAAATACGttttaaaaatatgatttttgttg
atttgataAACGACGGTATAATTCGTAGTCTCAATCGCAGACCTGGCCTC
TATAAGAAacctttttcgctagaggatgagcagaagcctatataaggggg
ggcgtacgggatttgctatttccgaaataccgaataattttgctaaaatt
tccgaaattccgtaaaaaaaatACAGGgtcgatttccgaaattccgaaat
accgaaataccgtacgccccccacataTAATTCGATACTTGTATGCTTGG
AGAGCAGTTTATTTACTTCTTTGGAAGTAGTTTATTATCATAATGTACAT
ATCAAACATAAAGTATTTTCAACGATATCACCATGAAGGACTTACTATTA
AGTGCCAACACGTATATATGTGCGCATTGACCTCAGTTTGATAGAGTATT
ATTCCAAGTATTCAGAGGACCAATTGTAATAGCAATGAAACACTCGTCCC
GGGGCTCCAAAAGTCAAAACCAGAATACTTATATTCATCCAAGTAATAGA
ATAAGCATGCCAAAGTTCAGTCATTACCCTAGGTTGGtgtaatgtcgaca
tccctcttctaatttcatcacccttttttagagataggaataataggaag
gtcagaatcggtgattgaaactaattttctttgcttatcAATCAGTCGAT
GAGTCcgtcagtgattccgaccttcctattgttcctatctttaaagaggg
gtgtcgaaattagaagagggatgtcgacattataaaattgagaattttca
catgaaaaaatggctcaaaaggacaaatacttcttgtatttgcttgaaac
atttgtcctttaacttttagcaggctaaaaagtgccataaaagttacatc
ttattcaaaagtttgaagttttacagattttctattttgtcaagaatttt
tcgcgagcataaactttcgcgaatggcccttcctagaatttttaaagaca
tttactttcgcgaaaggggccaaaattcgcgaaaattgtgaaagtttctg
ctcgcgaaagtttgtacgcctaaagtagcgTGCATTTTTTAGTCGGTGCT
AATGCTAAGTTGAATTGTTGAATTTTAGGATTAGGGATTTACAATATATG
AATAATTCACTTAAaacttttgtttatatttttctatataCAGTGctagg
aagaaaattttatactCAGACTGTTTTTATACATAACAGGATTTTTATAA
AGGACAATTTTTGAAGAGAAAGATTCACAATGTAgaagaaaagattgaaa
attacATACTCAGtaaaat
Run BLAST on NCBI

protein sequence of TCONS_00004261-protein

>TCONS_00004261-protein ID=TCONS_00004261-protein|Name=TCONS_00004261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MTTLPEKATKFFENVSLLQSFPVFIGYLLMILLIPVWKRILPVANNLKMI
MIPYNIICVLLSLAATFLLFYGAFLGSHLYAYEENQYIVYGMAIYTISKN
VELLDTVFMILRHKYRQISFLHVFHHSTILVLGNYAFVYTCYPPIAVPVG
LNSLVHVPLYAYYAKTAISPSLQVSWKKALTIFQIVQFLFDLVFATIGYL
YHGFCIYSIMYGGSMLVLFSNFYYFAYIKKKKTV
Run BLAST on NCBI

transcript from alignment at sc0000041:762163..770439+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004261 ID=TCONS_00004261|Name=TCONS_00004261|organism=Clytia hemisphaerica|type=transcript|length=8277bp|location=Sequence derived from alignment at sc0000041:762163..770439+ (Clytia hemisphaerica)
TGAATAAAAGTTTCTACCGGTAGGTATCTTTGttgaaaatcgaaagtgac
aaaGTCCACATTTTATCAGATTTGACTTCTTTTGCAAAAATCTTGCCAAA
CACCTAAAGTCTTTGTAGACTGAAGAAAATAAACAACAGTTTTGGACTCT
CACACAGTCACACAGCATTCTGTCAACAAGCAAGAAGTGAAGCAGCCAAC
AATCTTGTTTATAATGACAACTTTACCTGGTAAGAATAGATTATTGATAG
GACAGGttcaggggggggggaggtCAAAGTTTTCTGGGTATAAAAAAGCT
GGTAGCCGTCACCCAACCAACCCTACAGCCCTATTTTTTCGCAATTACAA
TGCAGCCAGTAGCTTTAGCAGACTTTCATTTGAATTGAGCCCAAAATCCA
GTTTGTACCAATTTTTTCTCCCGATTGCTGGCAGGCAGGCTAGCTAAAAG
TAGGGATTCAAactttgaatgaatttttcaaaaaatctaattaacttacg
actttcaaataaaaggaaTATGGTAGACTAGatatagtcatctggggtaa
ttgCGGGACGATTTTGACTTATTTGGGCATTACTCTGAAAAAGTATTTAT
CCTCAAGATCcgatcttttgatattttattcatCAAAAAGTATGACCTTG
ACTCTACACACGATTTATTAcagtgaagtcgggtaacttgcatcagtgga
ggcaaacatgcatagccctcaaagaatgacctgtctggcagttacatcaa
aatgcctcgaaaatgtcaatatgaaaattgcgtaatcagNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaggccga
gacaaactttcaataattggattgtaacatcgagttaagtctcttttgtt
aagtcaccaggggtaaataaaacagaccttgatacatttatccttcgttt
caacttgacgattcgttcaAAACTCAGCCTcttaaatatttggggtaggt
aaaataaacaataaaatataattaccctttccaaataaacctcttcggtg
acGAGCGCAGTCTACTCTGACTTAAttataaaatttatgtgatgggagtt
tgacgtACTCTCTGTGTATTTACATTCgttgtaatgtaatgttgtttggg
gaattatgaagttctctggaatttcgattgcatttattcaggttgatttt
ttatgacttctaatggtattttttctaacgagtttgattaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctctgttct
cacacttatgtctttttttttgcgtccttttccgtgattacttttattta
tatttttaaagacagataagaaggcatattgatgtaactgtctggtatca
ttaaaattaaagttaaatgaaaacaaaaattgtagAGTAGAGCCCATCTG
CCCctttctgacaaaaagaagtAACCCACATGAAGTCAAATTGAGAAAAT
CAACCAAACGCGTTTAATGCTGGCATCGAATGCAGATAGTATATATCAAA
AAACAAATGACTGATTATTGTTCTACTCATTGAAGATTAGCATCACTGCT
TTTCTCACAATGCTCACTGTTGCAGAGGAAAACAAGACCCTTGTTTTGTC
AGTAAACCTCaaccaaaagaaattgaagaaagaagTAAATGACCagtttt
ttgaagaatatttctgacaaaaggaagtaagtGATACctttttctgacaa
aaagaagcaaaacagtcatttacttctttttgtcagaaaacatTCTCCAG
AAAACTGTCAGTTACTTCTTTATTCACCCTTGGGAAGAAGTTATATCGGA
tcgcccaaagttaccttcatgtttttattttattttcttatctctgatcc
agtctttcttttttctgactgtctgagtttctgagacttagttttcAATT
CTGACTAAGTTTTCATACCTGTATCATATTTTGACCAACCACATCATCGC
ACCATGCGGGGTTTGAACCACCatcaaagaaagaccttcggatTCGGATA
CCAACGCCTTATCTGTTGAGCCATCGTCGCATAGCAaaaccacgcaattc
ataacatattataccgaactggcaaaagacgggggcaatgatattataat
atgggtaaaagtaccccttttttaaacctgactgaaattcgagccgttac
tagcaaccctgcgaggcccaaggcgccgagtatgcacccggcacagtgac
aagccgtaaCTAGCAACCctctaactgttagttaatcaattccaaacaac
aaaacccccagAAACACAGTGGGGTGAccatcagcgatccgtggataaga
aaatgaaataaaaaagtgaaggtaactttgggcgaTCCGATATAACTCAC
TCCACACCCTTGGGGTAAATATGGGAcaggtataaaatgttattgaaaaa
tccAGATATATATATTTCCAAAAGGTCATGATATTTGGGGTTTTGCATCC
ACTTGATGACTTTAAATCCAAGTGCTATCATTTAAAGGAGTTTCAACAAA
ATTGGTGACAGTGTCCCATTTTTACCCCAGCTTTTTCCCCATTTGGGAGT
AATAACAGGACACTTCAAACAGTGATATTTGTATAGAGCAATCTAGACCA
ACTGAAGTAAATTAGATGCAAACCTTTGCAGGTTTTGAAAGACTTAGAGT
GTAGTTATGATTCCATCAAGCtagaaaatcaagtttgtagttttcttata
aaaaataagcaCTTTTTTAAACTCAAACTTTAGTGTCCCATAATTACCAC
AAGATTAAGATTTGACTACGGGGTAAATATGTTCTTGTTTGATAATGAGA
CTATTATGATCTCAAACCATAGTATCTTGATGTCAGAATTCAGTCAAAAT
TATAATCAAAGTGATTGCAGCTCTTCCTGACACTAAAGCTTGAAAAAGTT
CCTTCTAAAActacaaaattttatttttatgatcacatgtgaaacttttg
ttgaaacatcaaaagtatatgCTAGAATGATCTAACTAGACATTTTTCTA
GCCGCTAGAATGACctggtcaaataaaaaatagctTTTTATTAGCTGtaa
ggttaaaaatatttataagtTTTTCCATTCCTTATCCATTATTTTCATGA
GATTTGTTAATTTgttaatatttaaaagttcaacagaagtctgctctcct
ccacacGAGTCagagttgttcactcggtggcGATTTCGCGAACCCCTAAT
TCGACAGTCTGtcatttttacagctcgaacactgcgatggagagcgattA
TCTTTGGTGGAAATGAAACTTGAAACATGTTTTCTACCATAttcctttta
tttgaaagttgtaagttaataaaaaattttgaaaaattcaatcaaagttT
GAATCCCTAATCCCTAATTGCGAATCCCTAATCCCTAGTTCCGAATACCT
AACCGAGttatttttaataataaaaacGTGATAGATTATCTTGTCTCTAA
ATAATTGTTGTGGGGTAATTAGTGATTTGATAAGCTGTAgtgttctccaa
aacaactaTATAGTTAGCAGGTTTCATGAGCTTTTCTATGGTataaatga
agactctccagaGTATTGGCGATgatgaagaaatagaagaaaaattaaga
agTGAACCCTTGGACAATAGCTAGATTGTTTCATTTTGTTCAATTACAAA
CACTTGTGAAAGCGCCAAATATAATTTTAGGCAGTGCTAAATTTCTGGAT
TTAACTGTTTTACAATGATTTCCTAAGTGAAGAAAATATGGTGAGGCAGG
GTAATTTTGGGcctcgaaaaatatttttttcaagaaatttttggCCCTTT
AGAAGGTCCGAAGGTGGGAAGAGAGTCTCAGGTCCAAGTCTTTAAAGTCT
TTAAAAAGCAAATTGCTTTCAGTGGACGTTGATGACGGCCCTTTGCAGAC
AGAAGCTTCATATGTAGTATATTTCATGCTCTAATGAATTTGAAACGAAA
ATTCACATGCAAGATTTCTACATCAAATCAAGGACAATCCTTGGTTATCC
TTTGGACAAAtcaagaacaaaacaaaatacaccTTGGGAGCAAAAATCCC
TGGATATCAGGGATAAACTGAAATGTACTGGAATTGTACTTGATTAAGAA
AACTCTATCCAAAAGTTGTCCTTGATTGTACTTAGCTTAGATTttacaag
tttgtgctgctccagATTGTCTATAGTTTAtaccttttttttatttcatt
atacTCTTAGAAATTTAGGGATAATCCTGGTTTTGTATACCATGGATAAT
TTGtgtaaatctttttttaattcttgtaaatgtttttgttttattcagAG
AAAGCGACAAAgttctttgaaaatgtttctcTACTTCAATCATTTCCTGT
ATTCATTGGATACCTCCTGATGATATTATTGATCCCAGTTTGGAAGCGCA
TTCTTCCAGTTGCGAACAATTTGAAAATGGTAAGGATTTTTTCATTTGGG
AACTGTTTAATTTTGTTACTAGTTACTACTTATTGCTAGTTGTTATTCTG
TTAGTTAAAATTTcccaaaagaaaggaaaaaataaataagaaatagtaca
cgtttttttataaaacattcaaaatttttgaagcctttggatgttcttaa
ctttttgggcttaaatgtttctaaaatgttctcaatttcaccatttgtga
ccatttttacctattttggccattgaagtcttatgttcttatatagtttg
ctcttataaaaaacgtgtgatGGGATAAAACTCTAATTATAAAGTATAAT
TTTCTATGATAATTTGGAATTAAGAAGAGATTCATCTCGTGGTACTCATT
ATTCTAAACTAGAAGTAAAACTTGATGGTTTTAAAAAGCAAtatgacacc
cccttctcacagacccggtggggtcttttatcagccagtgggggtaaaat
aaCCCCGGAAAATAACGGACAAAAATTCgattgggattgatattcccatc
ttttttaacaacattttttggGACCTGGTTCCACGCCGGTATGCATCTGT
CATAAAATGATTGTGTTTGCACACCCCTTAATCCATTTTATGATAAGCAT
ACTatgtctggatgctttgagaacttcaGCTTCccaaggggcagacactt
gcttataaaaaaacatgtattgctTCTTTCTTTAAGATTATGATACCTTA
CAACATCATCTGTGTATTGTTGAGTTTGGCTGCAACATTTCTTCNAAACA
TGTATTGCTTCTTTCTTTAAGATTATGATACCTTACAACATCATCTGTGT
ATTGTTGAGTTTGGCTGCAACATTTCTTCTCTTCTATGGAGCTTTTTTGG
GAAGTCATCTTTATGCATACGAAGAGAACCAATACATTGTATATGGCATG
GCAATTTACACTATCTCAAAGAATGTTGAATTGCTTGACACTGTTTTCAT
GATTCTACGACATAAATATCGACAAATTTCATTCTTACATGTAAGTTTTG
GGAGGGTATGCTTTATTTCATCAACCAATTATATTGAACTAGCCGGTTAC
CCggccggcgtcgcacgccggttaagctgtacgccctaaaagtcctttgg
atgttgaagctggcttaaaaaaacgatcaaatgaataaaaaaatatcttc
aaagtttgactctaaacCTTGAACCCTTCCCCGGAGATCTAATTTCTTCT
Tatgctttttatcgccctttgaatgctgttattgttcgacaaacttttta
atttttatgttttgatttacatttgaaatgttcttttctataaaagaaac
ttattttgttttgaaaagaattcgaatgtcattaataaataagatcgttt
acattcgaaaacatttcaaacaaaagaaaagagaaaaacaggatcGGACA
AAGCTGggaagaaattaaaattactaaatgtagatgtgccttaaatttcg
aaacaaaggctgaataaagtctaaaccaggctctgtccgacctgtcaatc
aaaacaaacttatcgagaacaaaacattgcttgcgaaatcgaaagtgaca
cacaaacagACAgaacggctattaatatatagattcaGAGTTTAACTTGG
AAAGGGACATTGCTGTAAATTGATTTTGGATTTTAAACGCCTCATCCAGT
TTATAGGGTACCCCCGATTCCACCATTTTGTCAATCTTTTCCCCACAACT
TCGAAACAAGAAGAAATTTTACCACGGAAAGTTTCtttgaaattgaagat
tttcatcAACAATTTGtagataaaattattttttcagacAGGGAAAAACA
CCATACATTTACAAGATCTTTTCTTTCGCTCATTTCTTTGAGCATTATCT
ATTCTAAAAGTAGAAAAATTAACAGATTagttaaataaatcaaaaaatat
aaaccagaaattcaaaattattttgaatatttttgggaaaattctaTTTC
AAGGGACATtaacttttcaaataatttctaATTATTAGTTCCCCAATGAA
CTTGATTAATCATAGATTCTCCTTCTTCCATTTTTAGGTATTCCATCATT
CCACCATTCTTGTTTTGGGTAATTATGCATTTGTTTACACATGTTACCCA
CCCATAGCTGTACCAGTCGGGCTCAACTCACTTGTACACGTCCCCCTTTA
TGCATATTATGCTAAAACAGCTATCTCACCTTCACTGCAAGTTTCATGGA
AAAAAGCGCTAACCATTTTTCAAATTGTCCAATTTTTATTTGACTTGGTT
TTCGCGACTATAGGGTATTTGTATCATGGGTTttgtatttattcaatcat
GTATGGTGGTTCTATGCTGGTTTTGTTtagtaatttttattattttgctt
ACATCAAAAAGAAGAAGACTGTTTAAAGAAATACGttttaaaaatatgat
ttttgttgatttgataAACGACGGTATAATTCGTAGTCTCAATCGCAGAC
CTGGCCTCTATAAGAAacctttttcgctagaggatgagcagaagcctata
taagggggggcgtacgggatttgctatttccgaaataccgaataattttg
ctaaaatttccgaaattccgtaaaaaaaatACAGGgtcgatttccgaaat
tccgaaataccgaaataccgtacgccccccacataTAATTCGATACTTGT
ATGCTTGGAGAGCAGTTTATTTACTTCTTTGGAAGTAGTTTATTATCATA
ATGTACATATCAAACATAAAGTATTTTCAACGATATCACCATGAAGGACT
TACTATTAAGTGCCAACACGTATATATGTGCGCATTGACCTCAGTTTGAT
AGAGTATTATTCCAAGTATTCAGAGGACCAATTGTAATAGCAATGAAACA
CTCGTCCCGGGGCTCCAAAAGTCAAAACCAGAATACTTATATTCATCCAA
GTAATAGAATAAGCATGCCAAAGTTCAGTCATTACCCTAGGTTGGtgtaa
tgtcgacatccctcttctaatttcatcacccttttttagagataggaata
ataggaaggtcagaatcggtgattgaaactaattttctttgcttatcAAT
CAGTCGATGAGTCcgtcagtgattccgaccttcctattgttcctatcttt
aaagaggggtgtcgaaattagaagagggatgtcgacattataaaattgag
aattttcacatgaaaaaatggctcaaaaggacaaatacttcttgtatttg
cttgaaacatttgtcctttaacttttagcaggctaaaaagtgccataaaa
gttacatcttattcaaaagtttgaagttttacagattttctattttgtca
agaatttttcgcgagcataaactttcgcgaatggcccttcctagaatttt
taaagacatttactttcgcgaaaggggccaaaattcgcgaaaattgtgaa
agtttctgctcgcgaaagtttgtacgcctaaagtagcgTGCATTTTTTAG
TCGGTGCTAATGCTAAGTTGAATTGTTGAATTTTAGGATTAGGGATTTAC
AATATATGAATAATTCACTTAAaacttttgtttatatttttctatataCA
GTGctaggaagaaaattttatactCAGACTGTTTTTATACATAACAGGAT
TTTTATAAAGGACAATTTTTGAAGAGAAAGATTCACAATGTAgaagaaaa
gattgaaaattacATACTCAGtaaaat

Coding sequence (CDS) from alignment at sc0000041:762163..770439+

>TCONS_00004261 ID=TCONS_00004261|Name=TCONS_00004261|organism=Clytia hemisphaerica|type=CDS|length=3525bp|location=Sequence derived from alignment at sc0000041:762163..770439+ (Clytia hemisphaerica)
ATGACAACTTTACCTGAGAAAGCGACAAAgttctttgaaaatgtttctcT
ACTTCAATCATTTCCTGTATTCATTGGATACCTCCTGATGATATTATTGA
TCCCAGTTTGGAAGCGCATTCTTCCAGTTGCGAACAATTTGAAAATGATT
ATGATACCTTACAACATCATCTGTGTATTGTTGAGTTTGGCTGCAACATT
TCTTCTCTTCTATGGAGCTTTTTTGGGAAGTCATCTTTATGCATACGAAG
AGAACCAATACATTGTATATGGCATGGCAATTTACACTATCTCAAAGAAT
GTTGAATTGCTTGACACTGTTTTCATGATTCTACGACATAAATATCGACA
AATTTCATTCTTACATGTATTCCATCATTCCACCATTCTTGTTTTGGGTA
ATTATGCATTTGTTTACACATGTTACCCACCCATAGCTGTACCAGTCGGG
CTCAACTCACTTGTACACGTCCCCCTTTATGCATATTATGCTAAAACAGC
TATCTCACCTTCACTGCAAGTTTCATGGAAAAAAGCGCTAACCATTTTTC
AAATTGTCCAATTTTTATTTGACTTGGTTTTCGCGACTATAGGGTATTTG
TATCATGGGTTttgtatttattcaatcatGTATGGTGGTTCTATGCTGGT
TTTGTTtagtaatttttattattttgcttACATCAAAAAGAAGAAGACTG
TTTAAATGACAACTTTACCTGAGAAAGCGACAAAgttctttgaaaatgtt
tctcTACTTCAATCATTTCCTGTATTCATTGGATACCTCCTGATGATATT
ATTGATCCCAGTTTGGAAGCGCATTCTTCCAGTTGCGAACAATTTGAAAA
TGATTATGATACCTTACAACATCATCTGTGTATTGTTGAGTTTGGCTGCA
ACATTTCTTCTCTTCTATGGAGCTTTTTTGGGAAGTCATCTTTATGCATA
CGAAGAGAACCAATACATTGTATATGGCATGGCAATTTACACTATCTCAA
AGAATGTTGAATTGCTTGACACTGTTTTCATGATTCTACGACATAAATAT
CGACAAATTTCATTCTTACATGTATTCCATCATTCCACCATTCTTGTTTT
GGGTAATTATGCATTTGTTTACACATGTTACCCACCCATAGCTGTACCAG
TCGGGCTCAACTCACTTGTACACGTCCCCCTTTATGCATATTATGCTAAA
ACAGCTATCTCACCTTCACTGCAAGTTTCATGGAAAAAAGCGCTAACCAT
TTTTCAAATTGTCCAATTTTTATTTGACTTGGTTTTCGCGACTATAGGGT
ATTTGTATCATGGGTTttgtatttattcaatcatGTATGGTGGTTCTATG
CTGGTTTTGTTtagtaatttttattattttgcttACATCAAAAAGAAGAA
GACTGTTTAAATGACAACTTTACCTGAGAAAGCGACAAAgttctttgaaa
atgtttctcTACTTCAATCATTTCCTGTATTCATTGGATACCTCCTGATG
ATATTATTGATCCCAGTTTGGAAGCGCATTCTTCCAGTTGCGAACAATTT
GAAAATGATTATGATACCTTACAACATCATCTGTGTATTGTTGAGTTTGG
CTGCAACATTTCTTCTCTTCTATGGAGCTTTTTTGGGAAGTCATCTTTAT
GCATACGAAGAGAACCAATACATTGTATATGGCATGGCAATTTACACTAT
CTCAAAGAATGTTGAATTGCTTGACACTGTTTTCATGATTCTACGACATA
AATATCGACAAATTTCATTCTTACATGTATTCCATCATTCCACCATTCTT
GTTTTGGGTAATTATGCATTTGTTTACACATGTTACCCACCCATAGCTGT
ACCAGTCGGGCTCAACTCACTTGTACACGTCCCCCTTTATGCATATTATG
CTAAAACAGCTATCTCACCTTCACTGCAAGTTTCATGGAAAAAAGCGCTA
ACCATTTTTCAAATTGTCCAATTTTTATTTGACTTGGTTTTCGCGACTAT
AGGGTATTTGTATCATGGGTTttgtatttattcaatcatGTATGGTGGTT
CTATGCTGGTTTTGTTtagtaatttttattattttgcttACATCAAAAAG
AAGAAGACTGTTTAAATGACAACTTTACCTGAGAAAGCGACAAAgttctt
tgaaaatgtttctcTACTTCAATCATTTCCTGTATTCATTGGATACCTCC
TGATGATATTATTGATCCCAGTTTGGAAGCGCATTCTTCCAGTTGCGAAC
AATTTGAAAATGATTATGATACCTTACAACATCATCTGTGTATTGTTGAG
TTTGGCTGCAACATTTCTTCTCTTCTATGGAGCTTTTTTGGGAAGTCATC
TTTATGCATACGAAGAGAACCAATACATTGTATATGGCATGGCAATTTAC
ACTATCTCAAAGAATGTTGAATTGCTTGACACTGTTTTCATGATTCTACG
ACATAAATATCGACAAATTTCATTCTTACATGTATTCCATCATTCCACCA
TTCTTGTTTTGGGTAATTATGCATTTGTTTACACATGTTACCCACCCATA
GCTGTACCAGTCGGGCTCAACTCACTTGTACACGTCCCCCTTTATGCATA
TTATGCTAAAACAGCTATCTCACCTTCACTGCAAGTTTCATGGAAAAAAG
CGCTAACCATTTTTCAAATTGTCCAATTTTTATTTGACTTGGTTTTCGCG
ACTATAGGGTATTTGTATCATGGGTTttgtatttattcaatcatGTATGG
TGGTTCTATGCTGGTTTTGTTtagtaatttttattattttgcttACATCA
AAAAGAAGAAGACTGTTTAAATGACAACTTTACCTGAGAAAGCGACAAAg
ttctttgaaaatgtttctcTACTTCAATCATTTCCTGTATTCATTGGATA
CCTCCTGATGATATTATTGATCCCAGTTTGGAAGCGCATTCTTCCAGTTG
CGAACAATTTGAAAATGATTATGATACCTTACAACATCATCTGTGTATTG
TTGAGTTTGGCTGCAACATTTCTTCTCTTCTATGGAGCTTTTTTGGGAAG
TCATCTTTATGCATACGAAGAGAACCAATACATTGTATATGGCATGGCAA
TTTACACTATCTCAAAGAATGTTGAATTGCTTGACACTGTTTTCATGATT
CTACGACATAAATATCGACAAATTTCATTCTTACATGTATTCCATCATTC
CACCATTCTTGTTTTGGGTAATTATGCATTTGTTTACACATGTTACCCAC
CCATAGCTGTACCAGTCGGGCTCAACTCACTTGTACACGTCCCCCTTTAT
GCATATTATGCTAAAACAGCTATCTCACCTTCACTGCAAGTTTCATGGAA
AAAAGCGCTAACCATTTTTCAAATTGTCCAATTTTTATTTGACTTGGTTT
TCGCGACTATAGGGTATTTGTATCATGGGTTttgtatttattcaatcatG
TATGGTGGTTCTATGCTGGTTTTGTTtagtaatttttattattttgcttA
CATCAAAAAGAAGAAGACTGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002366XLOC_002366Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004261-exon-sc0000041-1491911889:762163..762391TCONS_00004261-exon-sc0000041-1491911889:762163..762391Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1510915933:762163..762391TCONS_00004261-exon-sc0000041-1510915933:762163..762391Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1575043694:762163..762391TCONS_00004261-exon-sc0000041-1575043694:762163..762391Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1491911889:766611..766741TCONS_00004261-exon-sc0000041-1491911889:766611..766741Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1510915933:766611..766741TCONS_00004261-exon-sc0000041-1510915933:766611..766741Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1575043694:766611..766741TCONS_00004261-exon-sc0000041-1575043694:766611..766741Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1491911889:767449..767498TCONS_00004261-exon-sc0000041-1491911889:767449..767498Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1510915933:767449..767498TCONS_00004261-exon-sc0000041-1510915933:767449..767498Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1575043694:767449..767498TCONS_00004261-exon-sc0000041-1575043694:767449..767498Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1491911889:767584..767752TCONS_00004261-exon-sc0000041-1491911889:767584..767752Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1510915933:767584..767752TCONS_00004261-exon-sc0000041-1510915933:767584..767752Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1575043694:767584..767752TCONS_00004261-exon-sc0000041-1575043694:767584..767752Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1491911889:768800..770439TCONS_00004261-exon-sc0000041-1491911889:768800..770439Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1510915933:768800..770439TCONS_00004261-exon-sc0000041-1510915933:768800..770439Clytia hemisphaericaexon
TCONS_00004261-exon-sc0000041-1575043694:768800..770439TCONS_00004261-exon-sc0000041-1575043694:768800..770439Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004261-proteinTCONS_00004261-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:762163..770439 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.52949	6.39489	3.93228	3.06413	11.6912	7.89341	12.9282	15.4713	12.4612	12.004	16.8213	10.3948	10.1107	10.6588	8.65774	10.3088	10.575	8.38496	3.84231	6.87211	12.068	12.3543	12.7948	12.2725	6.68682	10.625	11.9828	11.6276	13.6819	11.7044
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002076ELO_fam
IPR030457ELO_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00004261 vs. Swiss-Prot (Human)
Match: ELOV4 (Elongation of very long chain fatty acids protein 4 OS=Homo sapiens GN=ELOVL4 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.219e-23
Identity = 86/252 (34.13%), Postives = 119/252 (47.22%), Query Frame = 1 
Query:  235 ATKFFENVSLLQS----FPVFIGYLLMILLIPVW-KRILPVANNLKMIMIPYNIICVLLSLAATFLLFYGAFLGSHLYAYEENQY--------IVYGMAIYTISKNVELLDTVFMILRHKYRQISFLHVFHHSTILVLGNYAFVYTCYPPIAVPVGLNSLVHVPLYAYYAKTAISPSLQ--VSWKKALTIFQIVQFLFDLVFATIGYLYHGFCIYS------------IMYGGSMLVLFSNFYYFAYIKKKK 909
            A K  EN  L+QS      +   YLL + L P W K   P    +++++I YN   VLL+L     LF G++   + Y  +   Y        I   +  Y +SK VE LDTVF ILR K  Q+SFLHV+HH T+  L      +           LNS +HV +Y+YY  TA  P +Q  + WK+ LT+ Q++QF       TIG+      +Y+            I Y  S + LF NFY   Y + KK
Sbjct:   33 ADKRVENWPLMQSPWPTLSISTLYLLFVWLGPKWMKDREPF--QMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQF-----HVTIGHT--ALSLYTDCPFPKWMHWALIAYAISFIFLFLNFYIRTYKEPKK 275
The following BLAST results are available for this feature:
BLAST of TCONS_00004261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELOV48.219e-2334.13Elongation of very long chain fatty acids protein ... [more]
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