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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004257 ID=TCONS_00004257|Name=TCONS_00004257|organism=Clytia hemisphaerica|type=transcript|length=2350bp
aTGAAATTACATCCATCTTGACAATACTTTATGAAAATATCTATTTTTTC
ACAGCTCCAAAAACGCCCATTTCTGACGCCCTCTTAAAACgccctttcaa
aaaaattatataatcaaaacatcaaaacaaaatataaaatcggTTTTTGG
TTTTGCGTTGTGGTGACTTTGTAACCTTGTGTGTCATCTTTCTTCCATCC
TTACCTACTCAATAATGGGATCAATTATATCTGTTGTTGGTCCATACCAT
AGACCAATTACTATAGTTTTATCAACAGCCCTGGTTGGTGGAGCTCATTT
TCTTACAAGTGCAAAAAATACCTCTTCAGCGCTTGTTGATTTGGGACATC
TTGGCTCTTTTGCAGTATGGTTTGGATCACAATTTTGGGTTACATTTGTT
GCAGGTTTGACTATGGTCACAATACTTCCACGTAACTGGTTTGCCAAAGT
ACAACGTGTTTTATTTGATCATTATTTCTTGGGAGGTGTTCTTATGAACA
GTGCAATGTTATCAACTTTCATGATCAAACATCCATTCTCGACTTGGCAT
GGTCAAACTTCTGTCATGgGAAACGGTTTGATTGCTAGTTTGGCTTGTGT
TGGTATGAATTGTTTTCTTGTGAAGCCTTGGGTGACAAATACCAGTAAAA
TCATGCAAGATTTTGAAGGAGATCGTGGCTTGGGAAATGAACCTGGATCT
attaaagataaaaacattttgaCTGACCCAAAATATGTTGTAATCAAGAA
AGAGTTTGTGAAAGCTCACTCACTTTCAGCTATATTGAATCTTTTTAACA
TGTGCTTCTCTACATACCATCTTTGGTATTTAGGAAGTCATatttctttt
tagaatttatccATCATATTTACACTCTTAATTTGTAGTTAGGTTTTTAC
TTTAATTTCAAGTTTGTATACAAAGAAAGAGTGTCAAtggttttaaataa
attttgtttgtttttttgataagctttgttgatatttttttgtattttta
gataaTGTAGAATTTTAATCTAATATTTCAGTATGTTTTCAAAATAACTT
TATGTTGACTTATATTAACTGACATACCTAGTTTTTTGTGATTTCAAACA
CGCTTTAAATCAAAAGCTATTAGAACAAAAATTGCCATTATTAGTGTACT
TAACTAACTTCATGTTAACAAGAAATTTCCACTCTGCAAGCAAACtttag
ggaagaaatttttgtggaaagaaattttggcggaaagaaattttggtgga
tttggcggattttgctgaaatttttcaCTATTTCAGACTATTTAGGCCCT
AAATTGGGgcattaaattccctctgaaaaacttttttgtgccatccgcca
aaatttattcccttaaggtattattttaaaattctattttgattttttac
acagtaattctttaaaaaaaaaatggataaaataaTTACCGACAGAATCT
acaggaaaatgtttttaatgaatGACCTTGAAGGTGAAACAGATGTACAT
CATAAACTTTTCCATAATCATCATAATTATAAATATATGATAACTGGGCC
AAAGCAATGTGGTAAGACCTCCTTACTATTCGAAATGGCTTTCAGAGCGG
CTGAACAGGATTTTGACGTACTTTTTATCAGTTGTAATCCAATTCAGAAA
TTACCACATTTCCATGGCTGCAGACAGAAACCATCAACAGATGTATTGGA
TAAAATACAAATTGTCTATCCAAAGACTCTGAAagaatgtttatgtttat
tgAATGGACTTACGCATACACAAACAAATCATTACCAACTAATTGTAGTG
GATGACTTGGATGTATTGATTTCTACGCAAAGAGCAAATATGATTCAAAC
ATGTTCTACTTTGATATCTCAAGTCATTGATATTGTTGCATTTTCATCTA
AATTGACAGGaGTCGCTACCATGTTGATGTGCACTATATGCTCAGATATC
GCACAATACCAATCATTGATCGATATCATTAATTTATGGATACAGAACGA
GATAAAGTTCTTCAGACCAATTTCCAGACAGGCAgcaaataaagaaatat
ttcatttaaaatgtcATACTAAGAATTCTTCTTTGGCTGTTCAATCTGAT
AGCGATGTTGTAGGTATTCGTGCCACCTTTATAGAtggaagaatattttt
tgaatgagatttttttatgataGGCTCACGAGATTAAATTAttggttttc
tcaaatttttgcctttttctttaaaaacaaactctcacaataattaattt
tccaaaattccTGCACTCATGATAGggtatattttttaaagatctcaaat
ttttgcctttttctttaaaaacaaactctCACAATAATTAATTCAACAGA Run BLAST on NCBI protein sequence of TCONS_00004257-protein >TCONS_00004257-protein ID=TCONS_00004257-protein|Name=TCONS_00004257-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MDKIITDRIYRKMFLMNDLEGETDVHHKLFHNHHNYKYMITGPKQCGKTS
LLFEMAFRAAEQDFDVLFISCNPIQKLPHFHGCRQKPSTDVLDKIQIVYP
KTLKECLCLLNGLTHTQTNHYQLIVVDDLDVLISTQRANMIQTCSTLISQ
VIDIVAFSSKLTGVATMLMCTICSDIAQYQSLIDIINLWIQNEIKFFRPI
SRQAANKEIFHLKCHTKNSSLAVQSDSDVVGIRATFIDGRIFFE Run BLAST on NCBI transcript from alignment at sc0000041:709220..714657+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004257 ID=TCONS_00004257|Name=TCONS_00004257|organism=Clytia hemisphaerica|type=transcript|length=5438bp|location=Sequence derived from alignment at sc0000041:709220..714657+ (Clytia hemisphaerica)
aTGAAATTACATCCATCTTGACAATACTTTATGAAAATATCTATTTTTTC
ACAGCTCCAAAAACGCCCATTTCTGACGCCCTCTTAAAACgccctttcaa
aaaaattatataatcaaaacatcaaaacaaaatataaaatcggTTTTTGG
TTTTGCGTTGTGGTGACTTTGTAACCTTGTGTGTCATCTTTCTTCCATCC
TTACCTACTCAATAATGGGATCAATTATATCTGTTGTTGGTCCATACCAT
AGACCAATTACTATAGTTTTATCAACAGCCCTGGTTGGTGGAGCTCATTT
TCTTACAAGTGCAAAAAATACCTCTTCAGCGCTTGTTGATTTGGGACATC
TTGGCTCTTTTGCAGTATGGTTTGGATCACAATTTTGGGTTACATTTGTT
GCAGGTATacatatttttatcaatttggAGATTGGGCTGTAAAAATATAA
GACCTTACTAGACTCTCCCACTCAATACGTCAATACAATGGAAAATGATG
CGATGACCATCAGAAACCAATTGATGGATCATGGATTATATTATCGATTG
ATGATTCCTATTatcaacaaaagaaagacaattGCTAATCAGGTTGGGCC
GGGCCAATTTGTATTtgtatttggttgagttgcagaaGGCTTTAGAGGtg
tattctcgcaactataatAAACGCTTACcacttactaatgagcgtcctgT
CAGCacccttgaactgactacccaattcccctcacatggcatgggttgac
ccgggcgaaggaacgttcacttgccaagtgaactggtgtgagtgggaatc
aaaccctggcctcctgcacagaagccaaggtcgactactACTATACCACG
GCACCACCACAATGGCTGAGTGTGGTTTTAGGTTGGGTAGATTGGCTAAA
GTTTGCTGGTTGGCTTAAGTGTTGTTAGTTGTTGATAAACTAGTTGTTTT
ATTGGCTGTGTTGACAGGTATATAGGTGTTGCTGTTGGCTAATACTACTA
AAGCAAGAAGGTGAAAGGCTGAAAGTGTGTAGATAATTTTGGGTAAAGCT
GGCTGGTTGGCTAGCTAAAACTGcttaaaatatttcttgcaGGTGTTATT
CAATAGTCGCTCCTCCTCCTTAAGAAGGGTTCTTTGCCTATTGATTGATC
CATTattgacagttagtcacactagcgtcccaccataatgcgtatcaaag
attaatgctgcgaaagggctatatcgtttacttgacttctaaagggattc
atgaaaaaataacccagcactttttaatgaaattaacattttcaaaaact
atgggaaattgcctaaaatttgagccatataggaaaaaatttgagccaag
caaACCTTGAAAAcgaatttgaaaatcaacttcccaagaaaaagatctac
gggggagacggaaTCCACCTAGATCTGCACACCGCAGGATAGGATATTTC
CCAGAAATTTCACTGGACCTCAAACATTGACTcatttacatgtgcagaat
tatttttacatTAGCGTAGATAAACATgtccttaaaaatcaaagcgtCTC
GGGAATTGagtgacaaaatttggttggttgatattctagttctattgaat
tatcacatctgtttaaaatcacgaaaatgtacattttggtgaatttaaac
ataaagaataaaataaaataaaaagttaaaaacattagcgCAAGATGTTC
TAAGACGCTGGTAAAAATGTGGAAAGCACAAAAGTAGGTGTAGACTCAAA
ATGTCAAAGTGTAAGAGTCTGATTGCTGCACATTTGCATATATTTTTCCT
ACTATGTTAGTGATAATTAGCATTATTTTCATGCAGAAATTTCGTTTCTA
TCCTATTGGGAGAGCAGGCTTCgtcatttaaaaattctaggcgtgtcaat
cacactcctaaaCCATTAATTTTAGGAGTTTCAGGCATGTGATAAGGTGT
GTGATGCACTACTTTTAACTGTAAACTCAAAATTTAATGTGTGTGATTTA
TCACTCTCCTAAGAGGCTTTTAGATATTTGTGGAGGCATGCGCGTGCTAT
CGCACGCCTCAAACAATGCAGCCTGGGAGGGCTGGTGTAGGCAGTGTTTT
TAATGGAGCTGCTTGTATTCAGATTTGTCAAATGAAGCACTTTCAAAAGG
GTAACAGAAGGAGCATAAAATATCTGATTTTATGCTATGTCAACCAACCC
TATCAAACCAACTCTTGTAATGAAACCATCAAATTCTGATGATGTATTTT
GTTGCTGAATTATTATGTTTTATActattctttttatttatgcTAAGGTT
TGACTATGGTCACAATACTTCCACGTAACTGGTTTGCCAAAGTACAACGT
GTTTTATTTGATCATTATTTCTTGGGAGGTGTTCTTATGAACAGTGCAAT
GTTATCAACTTTCATGATCAAACATCCATTCTCGACTTGGCATGGTCAAA
CTTCTGTCATGGTACGGATTTCATAAATTACAACCTCTctgacaaaatta
ttttgtgAAGTCACTACAATGAAGCATTCAcataatactttaatgggatt
gaTTTCACGGGcattaaattttgcagatttagcgaaatttgaaaaagtct
attctgtaaaatctctttgaattaaattccaaaaatgtcaaaaaaacact
tttaacaTGTTTACTGCCATCAAAAAAGCGCTAATAATGCATATTTCACA
AACAACATGCATAGTTTGGCAGTGAAATAGCAAAATagcacaaaatcgtg
aaaatattatcTCACAACAATAGAGTCATCTGCAAAATTGAGTCCCTgca
atcttaaaattttgaggatgagctcaaccgcgaaaattaatcccatgaAA
GTTGGTTATAAGCTGGTCTTTGTCTGTTTAGCTTCTTAATTAATTTCCTC
ACCTTTACTGAGAAACACTGATTGGATAGATTATTATTCTTCACTTGTAA
CTCACTTGTAACCAGAGAGAAAAGACTATTTTTGGTGATTCCACTCTTTC
TCATTTTATCTTGGAATTAGAGGTTGGTAGCTGACACTACACTGATTTAT
GGTAAGACATTTGAcataatttttagaatttgtatTTTGTTGGTTTAGTG
AATTCGTTTCACATCATcttcatcttttttttaataaacaggGAAACGGT
TTGATTGCTAGTTTGGCTTGTGTTGGTATGAATTGTTTTCTTGTGAAGCC
TTGGGTGACAAATACCAGTAAAATCATGCAAGATTTTGAAGGAGATCGTG
GCTTGGGAAATGAACCTGGATCTattaaagataaaaacattttgaCTGAC
CCAAAATATGTTGTAATCAAGAAAGAGTTTGTGAAAGCTCACTCACTTTC
AGCTATATTGAATCTTTTTAACATGTGCTTCTCTACATACCATCTTTGGT
ATTTAGGAAGTCATatttctttttagaatttatccATCATATTTACACTC
TTAATTTGTAGTTAGGTTTTTACTTTAATTTCAAGTTTGTATACAAAGAA
AGAGTGTCAAtggttttaaataaattttgtttgtttttttgataagcttt
gttgatatttttttgtatttttagataaTGTAGAATTTTAATCTAATATT
TCAGTATGTTTTCAAAATAACTTTATGTTGACTTATATTAACTGACATAC
CTAGTTTTTTGTGATTTCAAACACGCTTTAAATCAAAAGCTATTAGAACA
AAAATTGCCATTATTAGTGTACTTAACTAACTTCATGTTAACAAGAAATT
TCCACTCTGCAAGCAAACtttagggaagaaatttttgtggaaagaaattt
tggcggaaagaaattttggtggatttggcggattttgctgaaatttttca
CTATTTCAGACTATTTAGGCCCTAAATTGGGgcattaaattccctctgaa
aaacttttttgtgccatccgccaaaatttattcccttaaggtattatttt
aaaattctattttgattttttacacagtaattctttaaaaaaaaaatgga
taaaataaTTACCGACAGAATCTacaggaaaatgtttttaatgaatGACC
TTGAAGGTGAAACAGATGTACATCATAAACTTTTCCATAATCATCATAAT
TATAAATATATGATAACTGGGCCAAAGCAATGTGGTAAGACCTCCTTACT
ATTCGAAATGGCTTTCAGAGCGGCTGAACAGGATTTTGACGTACTTTTTA
TCAGTTGTAATCCAATTCAGAAATTACCACATTTCCATGGCTGCAGACAG
AAACCATCAACAGATGTATTGGATAAAATACAAATTGTCTATCCAAAGAC
TCTGAAagaatgtttatgtttattgAATGGACTTACGCATACACAAACAA
ATCATTACCAACTAATTGTAGTGGATGACTTGGATGTATTGATTTCTACG
CAAAGAGCAAATATGATTCAAACATGTTCTACTTTGATATCTCAAGTCAT
TGATATTGTTGCATTTTCATCTAAATTGACAGGGTGAGTTCTGTGTTTAA
AGCTTATTTCTGGGAATAGTGAAATATCTGTTATACTTTAttacatgaaa
ataaatatggaagtatttaacacgaattgaaattttttgtgttaATAGAA
ACCCCCTtgattaaaaccagccgtggggtcattgaaaaagcaaataaaat
ttgtgttaattttcgcgtgttaatttcaaggccgttaaatacttccatat
ttattttgttcatgtaataaggtagttTATTCTGTCAGCCTCCAAATGAT
AACAGATCtgagaaaaaactgtttttaataTTAATAAATCAAGCTCGTAc
atattgtttttttattatgtcTTTGTTTATCATAAAATTTTTCTGCCAAT
TAGCTGTGTGAAAAAAATCcgcaaaatctgaaaaatcatCGGAAATTGCA
AGGAACAAAGGTCAAAAATGGGACAAAATTAACACCATACATGAAACTGC
ATTTCTAAGAAAGTTTCTCTTGCAAttaaaatacttttcttttcttagaG
TCGCTACCATGTTGATGTGCACTATATGCTCAGATATCGCACAATACCAA
TCATTGATCGATATCATTAATTTATGGATACAGAACGAGATAAAGTTCTT
CAGACCAATTTCCAGACAGGCAgcaaataaagaaatatttcatttaaaat
gtcATACTAAGAATTCTTCTTTGGCTGTTCAATCTGATAGCGATGTTGTA
GGTATTCGTGCCACCTTTATAGAtggaagaatattttttgaatgagattt
ttttatgataGGCTCACGAGATTAAATTAttggttttctcaaatttttgc
ctttttctttaaaaacaaactctcacaataattaattttccaaaattccT
GCACTCATGATAGggtatattttttaaagatctcaaatttttgccttttt
ctttaaaaacaaactctCACAATAATTAATTCAACAGA Coding sequence (CDS) from alignment at sc0000041:709220..714657+ >TCONS_00004257 ID=TCONS_00004257|Name=TCONS_00004257|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at sc0000041:709220..714657+ (Clytia hemisphaerica)
atggataaaataaTTACCGACAGAATCTacaggaaaatgtttttaatgaa
tGACCTTGAAGGTGAAACAGATGTACATCATAAACTTTTCCATAATCATC
ATAATTATAAATATATGATAACTGGGCCAAAGCAATGTGGTAAGACCTCC
TTACTATTCGAAATGGCTTTCAGAGCGGCTGAACAGGATTTTGACGTACT
TTTTATCAGTTGTAATCCAATTCAGAAATTACCACATTTCCATGGCTGCA
GACAGAAACCATCAACAGATGTATTGGATAAAATACAAATTGTCTATCCA
AAGACTCTGAAagaatgtttatgtttattgAATGGACTTACGCATACACA
AACAAATCATTACCAACTAATTGTAGTGGATGACTTGGATGTATTGATTT
CTACGCAAAGAGCAAATATGATTCAAACATGTTCTACTTTGATATCTCAA
GTCATTGATATTGTTGCATTTTCATCTAAATTGACAGGaGTCGCTACCAT
GTTGATGTGCACTATATGCTCAGATATCGCACAATACCAATCATTGATCG
ATATCATTAATTTATGGATACAGAACGAGATAAAGTTCTTCAGACCAATT
TCCAGACAGGCAgcaaataaagaaatatttcatttaaaatgtcATACTAA
GAATTCTTCTTTGGCTGTTCAATCTGATAGCGATGTTGTAGGTATTCGTG
CCACCTTTATAGAtggaagaatattttttgaatgaatggataaaataaTT
ACCGACAGAATCTacaggaaaatgtttttaatgaatGACCTTGAAGGTGA
AACAGATGTACATCATAAACTTTTCCATAATCATCATAATTATAAATATA
TGATAACTGGGCCAAAGCAATGTGGTAAGACCTCCTTACTATTCGAAATG
GCTTTCAGAGCGGCTGAACAGGATTTTGACGTACTTTTTATCAGTTGTAA
TCCAATTCAGAAATTACCACATTTCCATGGCTGCAGACAGAAACCATCAA
CAGATGTATTGGATAAAATACAAATTGTCTATCCAAAGACTCTGAAagaa
tgtttatgtttattgAATGGACTTACGCATACACAAACAAATCATTACCA
ACTAATTGTAGTGGATGACTTGGATGTATTGATTTCTACGCAAAGAGCAA
ATATGATTCAAACATGTTCTACTTTGATATCTCAAGTCATTGATATTGTT
GCATTTTCATCTAAATTGACAGGaGTCGCTACCATGTTGATGTGCACTAT
ATGCTCAGATATCGCACAATACCAATCATTGATCGATATCATTAATTTAT
GGATACAGAACGAGATAAAGTTCTTCAGACCAATTTCCAGACAGGCAgca
aataaagaaatatttcatttaaaatgtcATACTAAGAATTCTTCTTTGGC
TGTTCAATCTGATAGCGATGTTGTAGGTATTCGTGCCACCTTTATAGAtg
gaagaatattttttgaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004257-exon-sc0000041-1491911889:709220..709623 | TCONS_00004257-exon-sc0000041-1491911889:709220..709623 | Clytia hemisphaerica | exon |
| TCONS_00004257-exon-sc0000041-1510915933:709220..709623 | TCONS_00004257-exon-sc0000041-1510915933:709220..709623 | Clytia hemisphaerica | exon |
| TCONS_00004257-exon-sc0000041-1575043694:709220..709623 | TCONS_00004257-exon-sc0000041-1575043694:709220..709623 | Clytia hemisphaerica | exon |
| TCONS_00004257-exon-sc0000041-1491911889:711517..711680 | TCONS_00004257-exon-sc0000041-1491911889:711517..711680 | Clytia hemisphaerica | exon |
| TCONS_00004257-exon-sc0000041-1510915933:711517..711680 | TCONS_00004257-exon-sc0000041-1510915933:711517..711680 | Clytia hemisphaerica | exon |
| TCONS_00004257-exon-sc0000041-1575043694:711517..711680 | TCONS_00004257-exon-sc0000041-1575043694:711517..711680 | Clytia hemisphaerica | exon |
| TCONS_00004257-exon-sc0000041-1491911889:712361..713702 | TCONS_00004257-exon-sc0000041-1491911889:712361..713702 | Clytia hemisphaerica | exon |
| TCONS_00004257-exon-sc0000041-1510915933:712361..713702 | TCONS_00004257-exon-sc0000041-1510915933:712361..713702 | Clytia hemisphaerica | exon |
| TCONS_00004257-exon-sc0000041-1575043694:712361..713702 | TCONS_00004257-exon-sc0000041-1575043694:712361..713702 | Clytia hemisphaerica | exon |
| TCONS_00004257-exon-sc0000041-1491911889:714218..714657 | TCONS_00004257-exon-sc0000041-1491911889:714218..714657 | Clytia hemisphaerica | exon |
| TCONS_00004257-exon-sc0000041-1510915933:714218..714657 | TCONS_00004257-exon-sc0000041-1510915933:714218..714657 | Clytia hemisphaerica | exon |
| TCONS_00004257-exon-sc0000041-1575043694:714218..714657 | TCONS_00004257-exon-sc0000041-1575043694:714218..714657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:709220..714657 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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