TCONS_00004254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004254
Unique NameTCONS_00004254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1911

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004254 ID=TCONS_00004254|Name=TCONS_00004254|organism=Clytia hemisphaerica|type=transcript|length=1911bp
cagGTATTCAATGTAATATAAAAGTAGAAACATACTTAAAGAATAATAAT
TTACACTATGAGTGATGAGACGTGGGACCCGAATGGTTCACTGGTTTGTC
CATTTGACCCATTGCACATCATTTCTGTCAAACGATATCAATATCACATC
ATCAAATGTCGGAAGAACCACCCTAATAAAGATTTTGTACCATGCCCTTT
CAATGCTAAACATGTTGTTTTGCGTCCAGAACTCAAAACACATATAGCAC
ATTGTCCGAACAGGGTTGTTCTTGAGCATGACATTATGAAAGAGCAATGT
CCGGAGACGGGGGAAAGTTACCGTTTGAAAGGAAAAACAGACATCCCACG
TGGAAATTATCATGTGCCAGAAACCGATGAAAATTGGGATGATGAAATTG
AAGAAAGTATTACACAAAGATTCGAGGAGCATACGATTCAATCACGAAGG
AATTATGAGGACAGTGGATTCTGTTTGCGTCGACCCAATATGCCGGAAAG
TGGTGAAGCATCGCAGAGGTTTTCAGTTCAACTACCGGACAGGATAGAAA
ACCGGACACCCGTCTTTCCGGAAGACAGTTCGAGTGTTCATTCTTACGCT
ACCCGGTCTTCATCGATATACGTTGACCCGGTCAAGTGGAATAATGCgga
attcaaaaaaacttcatcagacaaagacaaaaaattacaaaacaatGTTT
TGGGTCGTGGCGCCCTATTAACAAAATTTAAGACTAAAACAACGGTCGGA
CGAGATAAATCGGTTTTAAAACCTGATCGCCCACACGGGGTGAATGTAGC
ACCTATACGTAAACCGTTTGGACGAGGAACTCTAATGGAAGCGGTGAAGA
ATTATAACGGAAAGAAGTGATAGCGTTTGAAGTTTGTTGAGTGGAGGTTG
AGCTTTCGTTGTGTTTGCTATTTTGACGGTATTTATTACTCCAAAGACGC
TCACTTTTTACCTCCGGATTGGTTTTAAGACTGGTTTTAGACCTTGAGCG
TATCATGGAACTGTGTTGTCTCGACTGATAAACTCCATCCAAAAGAATCT
CCCTAATCTCTTTCAAAGTGACAAAGTTCTCATCGGGACGCTACTTTTTT
ACTGACTTTGTACgcgcttttttctttttgcattttcataaaaaaaacga
aaatctttTGTATATATAGATAGGTATACTTTAGGGTATATGATATTGTT
TATCGTTTATATCTTTCAGTTTGAAACTTGAGCCTCGGGTTTTTCTTCAG
CTTCAGCTTGAATAGAGCCTAGTGTTCTTGAAATGAGAGTTAGCGTGTTA
TTTAGTTCCGGCGACTAGACTTATTAATTTGGTTATTAAAACAGGGTGTA
TTTGAATTTTATCCATGATATCGTTTATCCATTTACTGATAGGCTCGACC
AATAAGGTATAACCGAAAGCTAGAGTCCAGTCTCCTATGCAGGATTTAAA
GCCACTTACTTCCTACATAAGTTGCACGACCCGAGTGGTTTTCATGCAAA
TGCTGGAATAGATGTAAAATTTACCGGAAGATTCGAAAAATGTAGAGTCA
TTAGGCCGGTTTGGGGGACGGTTTTCTTTTACGGGCCAATTTATCAAAAA
CTATAAAACGTAAAGAAAAGTGCTCGATGCGTCATTCGAATTGGGACGCA
AATTTTAGGGCTTCGCTTTTTCTTACTTACCCAACTGGCCCACAACTTTC
TTTCAACGTTTATGTATGTTCAAAAAGATCCAtataacattagatgaacg
ttgaaacaacattgctTGCCAGCTGGGTAGGTAAGATTGAGGATTCGCCT
TTATCCTCCGGCTTGAAACTCGATGGAATAAAAAAGGGAGTCTTTCCAGT
AAAGTTATTTTTATACAAAGAGTGTCTGTATATCTTGATGTTTCATAGTT
TGTAATCCGAA
Run BLAST on NCBI

protein sequence of TCONS_00004254-protein

>TCONS_00004254-protein ID=TCONS_00004254-protein|Name=TCONS_00004254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MSDETWDPNGSLVCPFDPLHIISVKRYQYHIIKCRKNHPNKDFVPCPFNA
KHVVLRPELKTHIAHCPNRVVLEHDIMKEQCPETGESYRLKGKTDIPRGN
YHVPETDENWDDEIEESITQRFEEHTIQSRRNYEDSGFCLRRPNMPESGE
ASQRFSVQLPDRIENRTPVFPEDSSSVHSYATRSSSIYVDPVKWNNAEFK
KTSSDKDKKLQNNVLGRGALLTKFKTKTTVGRDKSVLKPDRPHGVNVAPI
RKPFGRGTLMEAVKNYNGKK
Run BLAST on NCBI

transcript from alignment at sc0000041:595239..613626+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004254 ID=TCONS_00004254|Name=TCONS_00004254|organism=Clytia hemisphaerica|type=transcript|length=18388bp|location=Sequence derived from alignment at sc0000041:595239..613626+ (Clytia hemisphaerica)
cagGTATTCAATGTAATATAAAAGTAGAAACATACTTAAAGAATAATAAT
TTACACTATGAGTGATGAGACGTGGGACCCGAATGGTTCACTGGTTTGTC
CATTTGACCCATTGCACATCATTTCTGTCAAACGATATCAATATCACATC
ATCAAATGTCGGAAGGTTTGTATTTATGGTAAAGTATttaccaatgaagt
ataagtccgaagggctagaagcgaatcttctaggtaggatttgaagctgC
TAAGTCTTACCCAAGTAAAgtggtttttaaattttatacaaattccggat
taaaagtaaaattttctgctagatttcaaagaaataccacttgacttgaa
aacaaagaaaccgctaAATTCAATCCATTGTCAAAAATACGGTTTATTCT
AAGGCTTCCCTTTattttgcctgagaaaggttaaatatgcgcttctagcc
ctttgggTTTGTACTTCATTGGTGTGTACCCACTGAACGATATAATAAAC
CCTGGAAGCAGTTTTCCAATCTCAAATAACTAAAATCTttgatcttttga
ttttttaccaaaataaCCTAACAGTACTACAGATGTAAATGCATTTACAG
CGCTAGACCTAATGTATTGAACACTGGTGATTTAGCTTTGTTTGACGTTA
GGCAAAGTCTCAACACTGAAAATGTCAATGGCTTCTTTGTGGGTGCTGCT
TAAAAACTCTAATCACTGATCAAAGATGACAGTTATAGCTCAGTTGAGTC
CAGGGTTTATTATGGACATTATTGTGTACTTACAAGTGAATTAGATTTTG
CATGCCTTAAGTTTTAGTAATAGTGGAATAATGGTCATTTTcacgaaaat
tagtttttgTCAAAAGGTTTATGATCTCGTAGGAAAATTTTGGGTGAAAT
TGGGTGAATGAAAAAAAGTCTGATTTGTTGAATTTAGTCActcaaaaaac
aaaatagaatttAATAGAAATTCTCAAAGATCTTTAAGAAATTCCTTAAA
GAGGtgcttaaaaagaaagaattatagtaaactagccgtcccggcgtcgt
ccgagacgacttcttactccttttaatacgctcgcttcgctcgcttttct
atttttcagaaacttgtagggaTTTGTNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNgcgagaatgggagagttccgatttaagcgtattat
aatatagataaaATGAAGTCTTCCTCTTCCTTTTGGGATCTAGTGAAACA
GAACGTCAACTTGAACAAACAACAGAACTGTTGTAAAAAACTTGCTTGCT
TTGTATAATGATTTCccatatctttttttaaaaatattttttgcattcTT
TTAGAACCACCCTAATAAAGATTTTGTACCATGCCCTTTCAATGCTAAAC
ATGTTGTTTTGCGTCCAGAACTCAAAACACATATAGCACATTGTCCGAAC
AGGGTAAGTTAGGTTTCATTTCCTTCTATTTCATATACTCGcgtcgtttg
ttcgttcgttcgtgtTCGTTTTTTCGTTCATACACTTGTGTTcagtttaa
ttttaatttttttagggTAATACACgtttataaaaaacatatttgGATTA
CGCttgaaatttgtaaataaattgTACTCAACTAGATCCTGCTAGATCAG
AACAATAACTTACAATAACATGTCATAATTAGCCTGATTTCAATTGCTAC
TGGTCATTCACATTATTTTTGCTACTTAATATTATACCTTTATTGAAATT
CGAATAGacctattttttctattttttccagGTTGTTCTTGAGCATGACA
TTATGAAAGGTATTGGATTTTCTTGTCCTAAGAACCCATACTTCACAAGA
GCATAGTAAACTTATTGTGAGCAATTCTTTTCAGTCAACTGTCGAATACA
TTCTATCACATTTATTGTTTTATACATTGAGTTTATCCGTTGAAACCACA
CTACACCCTGATGACCGAAAAATTCAATACCCCAAGATCAGAGGGGGGCG
ATAGAATCCAGTGAATAATACCATTCATAGACAATTGCCTGTGTTTTGTG
TAACAGTATTCGACTCTGTTGTGGGTCAGTAAACAATGTAAGCATTATTG
CAACAGAGGAAAATTTGAACACAGTCACTCTTTATTTTAAAATGCTATTT
GTTTTTGACATAGGtcttttttcacgaaattcgAATGCCTTCAGTAAAAT
GTCTTATCATTGAAAtatcaaagatttttaaaactttgtatAATAACGGC
ACCATAAAACGATCCTTTTCATTTATCTGAGCTATCAGATATACACCAGT
TAGAATTTCAAGCATTTTAGTCACTAGCCGCTTTTTGGCTTTGAGAAATT
GAGCTTTGACATTCAGAGTAACTGTTATAAGTAGCCGATACCCGCCGCAG
GTACTGAAATCGTTTAGAACCCCACCTGGACCCCTCATTTATCAAATCAA
ATTTATTCATAATTATAGAGGATTATAATAGACCTTACCGGCGTTTTTGA
TTTTTCTAAAACAGCGATGCATTGTGAGATTGTTTCGGGGGTATTACAAT
AGAATTCCCTCGAGGGATTCCTAAGAGAATTCTATTGTAATATCCCCGAG
AGTATCCCACAATGCATCGTTTTTTTAGAAAAATAAAACACTCCGATAAG
ATCTATTTCACTTTGGTTCACTATTTTGACATCATTTGAAGAAAAAAAAG
AAAACACTCTCCGTTTTTAAACTTAATTCAAAATTTAGTATTTTGCCGTA
AAAGGGGTTACGCACGGAGAACGAGTCTCGCGTTCGCAAAGCGAAAGGAT
TCTATAGACGCCTCAAGCCCACACTAGTTATGTAAGAAGAGGTGAAGGCT
ATCAATCCGCTGCTCAAAAGAATATTGTACTCTTTTTCCGAAAATTCCAA
ACCCCAAAGAAATTCCGAAAATCCAAAATTCCATAAatctaaaaattaca
acttaaaacggatcaaaactcaaaatactgtGAATCTTGTGACGaggacg
tcattttggccctgAATGTCGTCACCGAAAGGgtaataataaatttttaa
ctttactGAAATGAAATCTATTTCTAATTGATGATCCGATAGATTCTATC
GACGATTAGCAATCCAATGAAGActcaataagtaatagttatcgcatgac
tttgagtgcaatacgagaaatattttacgagcgaGGCGAGCCTTTTTATT
AAACGTAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNGAAAAATAACTTCCGGGTCTCTTTAATTTCggatgtttttgttcga
aaatcttgcTAGATTCGAATTTtaaattcgaacaaaaacattcgaccgAA
GTTCCCGCCGAAATtatgcacatcaaaataaagaaagattttgtcgatcc
agaagcttcaaaataaatgcagcagctttttcagagatgtgaaattatta
tacattacagtatacacagaaaaagaagatgtgtattgtattttttcgat
tgagaagaaatttttcattattgcgtttctctatcagattgataacactt
ttcgatgtttttgttttgatgcatAGATGAGAAAATNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGAATGGTCtgctgaaacaacattttt
gcaacaaaaactaattgGGGCGAACTTCTCAACTTTCAACTATCGTCAAG
CTGTAAACGTGTCGAATTTTCGAAGTAGGAagtgttgattgttgaagaat
tgatgctgaaaaaacaaagacaCAGTTTTGTAGAGGATTGGGAGAGACAC
Aagagactttttacaaaaacccctcgttacctggtttaatcaaagacatt
gaaatTCCCTCgttttgttatggaaaatattcttgacaagtattaaagaa
tttcaagtttttatacatgcattgataaaaaaaccGTTTGGTTTTCACGA
ACGAAGTGCCGATAGCTGAATTTATTTGCTATGGGTCGTGTCACGTGTGT
Gtcgagtagttttgtaataatttttatatatttcatcagatttaatttca
ctcactttttggaaagaatggagtaagagctcatcaaaaattagtttttt
ttactttacgTTTTCCCATTATTTATTCcgagagttcagttcttttcggc
tgtttagttttgattttctcacgctgcttacccaaatgttaaccaatttt
tatttaaagtcgtcctaagacctcataacacccctctctcattgcattct
cgataaattttccgatccaaagaggggttagccatttccaaactcctttc
caatctttccaattatcgcatttttttgttttgatgacgtcatcaactga
aaatggctaaagattcagccaaatttgaaaatcgtGCTCAAGCGATATAA
ACTCTTCAATCTCATTCaccataaaattcccgatagaatgaggggtcaac
gacctcccaactcctttccaatctcacgttattgcattttttttgttttg
atgacgtcatcaactgaaaatggctaaaaattcagccaaatttaaagtcc
tactcaagccttataaacctttccatctcattccccataaagttatcgat
ctaatgaggggtcaacgacctctcaactcttcttcaaacttgagatatcg
cattttcccaaacccgtgacgtcagtgggtccctttacccctaatgttgt
caacggtcaattcgcgaattttgaaatttttgcggtcaacaggtacctta
tgccccaagggtcccaaaaagccaaaaaacgtcaattttttgcaagggaa
agagggtttttaaatttgcgaaagattgacactgcaacgacttctcttaa
aaacgctaattttcacgaaattttcaaagttgaaccattccagaggctaa
acatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgtgaaaaaaaactgaa
tttccatttttagggcccgcatatcattgaaattttgtaaattttgctta
cgcgcatgcgtttgccaaaagagtcgcactccgctcgtTTACgctataca
tgagcgaagcagttttgctatcgtgtatatgtacctttaaatctcaccta
cgctggggagcgcaaatgaaaaattactatatatatTCAATCTTTCAAAC
GCAGAAATGATTGAGAAAGCCGTCCGCCCTTCCTTAGATCAAACCTAGAA
TCGCGGCGGAGAGACctggaattacggatggttaaattcgtttttttata
aaaagtgtcgcctcgtgcgtttagatataccaattcttaaaagctaAGGA
GATAATACACGTGGTTACCGGTACTAGATAAGCCTTGTTTTTATCTCCTt
aaggtttaaattaggaaatctaaagaagagataggaaaatcagcgcgggc
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACCTGCGGCGGGT
ATCGGCTACTTATAACAGTTACTCTGAATGTCAAAGCTCAATTTCTCAAA
GCCAAAAAGCGGCTAGTGACTAAAATGCTTGAAATTCTAACTGGTGTATA
TCTGATAGCTCAGATAAATGAAAAGGATCGTTTTATGGTGCCGTTATTat
acaaagttttaaaaatctttgataTTTCAATGATAAGACATTTTACTGAA
GGCATTcgaatttcgtgaaaaaagaCCTATGTCAAAAACAAATAGCATTT
TAAAATAAAGAGTGACTGTGTTCAAATTTTCCTCTGTTGCAATAATGCTT
ACATTGTTTACTGACCCACAACAGAGTCGAATACTGTTACACAAAACACA
GGCAATTGTCTATGAATGGTATTATTCACGATATGCGCCATTGTAATGCC
TTCGACATTACATCACGGGCCCAACAGCTGAtcggttgtaagtgacgtaa
aatcagtcaatacgtcactttcaaccaatcagctgttgggtccgtagaAG
ACATTACAATATTATTATTCTAATGTTTCGTATTTTTTCATAGAGCAATG
TCCGGAGACGGGGGAAAGTTACCGTTTGAAAGGAAAAACAGACATCCCAC
GTGGAAATTATCATGTGCCAGAAACCGATGAAAATTGGGATGATGGTAAG
ATCTTATAATGAGAAAGTCGGACtatagctctagtttagacggcctcgca
aatttcctattagcagattgatataaaaaataaaaaacgtcgAGGAAAGC
TCTCATTGGCTGAAACATACAAATAAGGTTACctcatactctggacattt
tgaaaagaaaatttgctTATGTGTGCAATATCCAGCCAATCAGAGCATTA
CTCGACGTTTAATTTCGTGACTTTTTTGCATGAATCTTCTacaagaaaaa
gcgtgtattgtgaaagagggcaatgcattgactttagacagcccacttga
TGCTCACTTTAATCAACAATTAGAATAGGGTAAAGAGCGGGCCGTCTAAG
CTAGAGCTTACTGAACGTGGACCTGATGAAAACACTTAAGACTtttctaa
aagtcctagatttcTAGGTTGTctaattaaatttcaaatctatCTATCTG
TCTAGTGCGGTGCAAGGGCTTTTTGAATAATcttcttcttaaaaaacatG
CGTTAAATGGTTTTTTTCAACATCTAAGAGGTTCCAGTCACTTCGGGTCT
TTGAAGTATATGGGTTGAAAACATGGTGTTctgaatttagaacgccatgg
ttgAAAATCATCACGGGCGTGAAACTTTTTCTGGAATCCTTTTagtatca
actttttttttgcaatttcagAAATTGAAGAAAGTATTACACAAAGATTC
GAGGAGCATACGATTCAATCACGAAGGTATATTTTACTTCTTTATTTCTT
CCCCGAGCTAGTGTATGGCGAAACCGAACGCCATCACGACAAATTTTAGC
TCTCATCACGATAACGAAACTTGTtaaattttcagccaaaatcaCCCATC
AACACAACACAAAACTTTTCCTATCCTGCGTCATGCCAAAATCTTGAACA
TGTCATCAcgcccaaaaaaatttgaaatcacgccatcacgcataAGAAAA
ATTACCTTAGCTTAGAGAAGACTTGTGtgattttttgttgatttcgtATC
CCTTAGAGAGACCTGGGAAGGTTCAAAAGTGACGTGAAAACTGTAAatac
ttattttgaaaaacagaggataatttggaattttttttgtacGTGCATTT
TATCACGACTAGAAATTACATAAATAAGCATTTTTGAGGTTAcatatgaa
aataatttgatttaTTATCATGATGTGTATGTGGACATTGTCAGACGAGT
ACACGAAATCGTTTTCCATCGCATCGATggaaacaaattaaatttttatt
ttattattttattttattgttttaattaATTTGAGCTTGATTTTCTCGAT
TTCTATATATTTTAAAATAACCAACCCCTTCCcattagaaagaaaaaaga
tgaacttaaattttgatgagatCATCTTTTAAATTCGGTTCGGCGTTCGA
CGGATTGAAAGTTAagttcaaataaataaaaaagttacttttagaATGTG
CgcgaaaacataaaaatcagattatcaaattaaattgattaGTATTGAAA
GATTGCGTcagtttctttttttaaatgactaaagATACAGCCCAGTAGGA
AGCAATTTATTATTGAGGGGGAAAAACAGCCGAAGGTGAACTAAAACGct
gtaaggctttttttaagctgGGAGTTTGGTGGCGCTTAGCCCCCTAATGG
GTCCAGGGCTGGCTCCGGTGGGGGTACAGGGGGGCGAAGCCCCCGTTAGC
TGGCGaatttttaggtaaaaagaCCCTATTTTTGAACTATTTTCCAACAA
CAGATTGAAACAATTTAAATAGTTTTAAGAGTAGAAGAAGAAAGGAAACA
AATACactttaaaaaactataaggaaacagtttatttttatcaaaacaaa
aaaaaagcaatgaaaaaaaataattttttttccggttgctACGGGACTGA
AGAATGATAAATATGGTCAAAGTGAGCTTTCGCTGCGCAAAGGaaagtta
agggctctgaccatagtcggaaaattcgaagattaaacttttgttttggg
ttctttgacacttttaacaaaaaactgtCTGTACAAGTTGTTTTGAACTT
TATTCCATCAAGAAGAATTAAGAATTAAATGACTTCAAAATTCCAAGGCT
TGCGCTAATAAAATTTTGACTTCACTTTGTTAAAGCTGtatctagtgttt
tatgtaAAGATATCTATCTATATCTCTTGTTTTGATTGGCATTTGACGTT
GGCTTTGACGTTTTCGACATCAAAGGTGCATTACAATTTTAAGAAACTTG
ATATTACATAAGCTTTGTTTCCATGGTAAAATGAGATGATCATCTATTAA
TATATCATATGTTTGAAATTGGAAGTTTCGTTTCGacaacttttttttac
aatagTTGGTTTCGTTTTATTGGTAGACTGTTTCTTAGAGTTTGGAGTTC
TTTGTCTGGAAAGTGAGAGGAAAATGtagaaaaggaagaaaaatgcATGG
ctatttttatagttttttttaatgaagacATTTTTTGTATAAAGGTTTGC
TCCTTCATTATCTCATAAAGTTGATAAGTAAGGCAGCATATCCTTGTAAT
AAGGGGTTTTGCCGAAACGTCCTAGAATTACGTAGACATCACAATactca
attttgaaaataaagaggggggtggaaaattttcgagattttaataaacg
ggagggacctaattgccggggggttggaaattgtacttctgaaaacccaa
aataaagtaaatataggctaaaatcaggctatttagagcaaaaataaggg
gccttctctttgacagctgaaaatattcttaaaaattaataaacggtggg
ggggggtcttaataaggtccgggggggttggaaaattttcgaaaaattga
caagcgggggcccgtttatttggaacctaagaatAAACAGCTTCAGGTTT
TTAGGCTGTAGCAGTTTGGAAACGAAGAGAAAATATAGCCTAAGAGATAC
ACAATGATTACATTTATTTTTAAACCTTTAAGTAAAAGAGTAcactttaa
aaaatactttttttttttataagaacctgtAAAATTCTTCTGAGGCTCGG
CTATTATTatatttttggcactttgaacctcaaattgttcttatcctgtt
cttattagcgaggttaagtatcgatagataaataacgacgacggacgaat
tttctCTAGCCTTCATTCATGCCACGGCACTTTTTTACAGGCTGATCGGA
AAGCAAGCTAGACTTATCCCGTGTATTATATCTGCTTTGCTTTTAGAACG
GAAAATCAAGCGGAAATTCGTTCTGGAAGCAAAGTTGATATCATTGCGGG
GTAAGTCTAGCTTGCTTTCCGATCAGCCTGTAGAAAAGTGCCGTGGCGCG
AATGAAGGCTAGAGAAAATTCGTCCATCGTCGTGATTTAtctatcgatac
ttaacctcactatttaTAGGGGTTTAATTAAGGTATTTTTGGCGTTatac
caatttttttacttttgactgctaaattgcttgaaatgaagctcagcatt
gttcttaaagtgttcttattttttggcgattttgagtgtaggccttttta
taaattattttgagtgcaacggctgtctttttttgaaattattaccaaGG
GGGTTAATTCCCTTGAGTCTTATGAACTCCTCCGGGAATCAATAACCATA
GcataacaatattttgaaaacgaggtaatcTTTGTTCGTGACGTATTTTA
TGAAAGTGTCTATTGTAACCACTGATATTTATATAAACCTTGAAGGAGTT
TCTTGATCCCTgtaaagcaaaatctttgatcaaagTTCTTTCCAAAGTTG
TCACCACAATTCTACTTTTCCTTGACTATTTACGATGTATCGCCACTTGC
CGTTTTAACACTGCGATGGCTTCTTTGcgaattctaaaaaaactcagATC
CAAGATGGCGGATATGTCTTAGTTCAGTGATTGCACAGAAGCAGTAGATT
AATTTGTGAGAGTTCTCGTTTATTATATTTGTGCAAATATCGTCATGTTT
TAGATTCAAATCACGTTAATATAATATCTGAAATAATTGAAAGAACCATG
ATATCAAAGCCGttgattttgttgtttattCTCATAAACGCCTCTTTGCA
ACATACTTGGCATGGAAGACCTAGCGTTTTCCAAAAACCACAATTCGCTC
GCTACATCATCAGTAATGCCGACTGGGGCGTGGTTTCTGCTTATTCCGAA
ATTTACAAACAACCGTTCGGTACTTTACAAAGTTTCGCTGACGGCCCGTT
AGACCACAGTACGGGAATTCCGTATTTTTACATTTCCCAATGGTCTACAA
CGTGGAAAAACATAGATGTTAATAGTACTGTATCTTTAACAGTCAGTGAA
GCTGAAAGTGATTATTGTGAAGCCCACAACCTAGACCCTATGGAACCAAT
TTGTGGCCGAATTATGCTGACCGGCGCCATAGTGCCAGTTACCGATGCAA
ACGAGCTTGCTTTTGCCAAAGCTGCAATGTTCACAAGACATCCAGCGATG
AAGGAATGGCCCACTAAGCATCATTGGACTTTCATGAAGCTGAATCTGAC
TTCGGTGAATGTGCTGTCTTTCTATGGTGGCATCTCTGACGTCACACTCG
CTGATTATTTCAACGCTAAACCGTCGCTTTGATAAGGAGGGATAAAGACT
GACTGATTGTTTACTTTTTGTTTaatcatgatattcatgacgtaatgttt
tctacggaaaggccctggtttttgccagtagtggcaaattttatacaact
tttatCTAGTTTAAagttgccactactggctaaaaccggggtttttccgt
agaaaacataacgtcgtgaatatcatgaattgtagtTGAAAAATTATGTC
GATCTCATATGACGTAATATTTTATATACATGGAAACGCCCGTCTTTCGT
TTATATTAATAATCCctgtttgatttttaaaaaacctTCTTTACAAAATA
TATAGAATTTTTTTAGCTTAAATTTTTAGAATGAtgattttgtttgtaat
tttttttacctcgGAATTTTGACtctcttttttttaagtttaatatatac
atttaaaaaagaaatattttgtacCTTCGATCAGCAGCTGTTCAAATTTC
GTTCCAAATTCGGGCTAATGCATTAAGAAAGTATGCTGGATAAAATCAGT
CAGGGTTAATTTCAAATTAGCCGATAGTCGGTTGTTTAGCCGAATCGGTT
NCTCGGTGAATGTACTGTCTTTCTATGGTGGCATCTCTGACGTCACACTC
GCTGATTATTTCAACGCTAAACCGTCGCTTTGATAAGGAGGGATAAAGAC
TGACTGATTGTTTACTTTTTGTTTaatcatgatattcatgacgtaatgtt
ttctacggaaaggccctggtttttgccagtagtggcaaattttatacaac
ttttatCTAGNGTGTTTTCTGCGGAAAGGCcctggtttttgccagtagtg
gcaaattttatacaacttttgtctagtttaaagtTGCCACTACTGGTTAA
AACCGGgtttttccgtagaaaacataacgtcgtgaatatcatgaattgta
gtTGAAAAATTATGTCGATCTAATATGACGTAATATTTTATATACATGGA
AACGCCCGTCTTTCGTTTATATTAATAACAcctgtttgattttttaaaaa
ccttcTTTACAAAATATATAGAATTTTAGCTTAAATTTTTAGAATGATGa
ttttatttgtaattttttttacctcgGAATTTTGACtctctttttttaaa
gtttaatatatacatttaaaaaagaaatattttgtacCTTCGATCAGCAG
CTGTTCAAATTTCATTCCAAATTCGGGCTAATGCATTAAGAAAGTATGCT
GGATAAAATCAGTCAGGGTTAATTTCAAATTAGCCGGTATTCGGTTGTTT
AGCCGGATCGGTTATCAGAGAGCTTGTCGCTTAAGTAACTGGTCATCGGT
TGTTTAGCCTATATAAACGGTGCTCAGTTCGGGGCGGAGTAAACAGTGac
ggaggtgtttacagtgttccaaaactctaccgccactatttTTTCCGTAG
ACCGCCTTTACGCCCTGACTCATATATACTTTCCGGCGTTAACTGACCCT
CTAAACGGACCATAGTATCGTCTACTTATATCGAAAATAGAAAATGCAAT
TGTAGGGAAAATCGTCGTTACAACAAATGTTGTATATACATATATACTTT
CCCGCGTTAACTGACCCTCTAAACGGACCATAGCATCGTCTACCTATATC
GAAAATAGAAAATGCAATTGAAGGGAAAATCGTCGTTACAAcaaatgttt
tgtttgtttcaacTCCGAGGAAAGGATATGAAGAATCTCCGCATaatgtt
tggtttggtttgaaaTCGGTTAAATACCCGATAATCGGTTATATAGCCTA
CAAACTTTTCAAAGATTATGAACATATTTGACCTCTGAATTTTTCACTAA
TAATCGATAATCGATGAATAGGCTAAACAACCGATTATCGGCTAATTTGA
ACATATCCCTGACTGACAATAGATCTTATcgaagtttttgattttctaaa
aaagtgatgcattgtgggattgttgcGGGGGTATTGctcaatattattat
tattattcaatagaaatctcttaggaattcctcgagggaattctattgta
ataccccgagacaatcccacaatgcatcactgttatagaaaaatcaaaat
aaggtCTATTGTATTGTAGATGTTTAGTAAAAGCTGAGGTAAACAACTTT
TCAACGATGGCAAAAGATTTCTctgaaagtaacatttaacATACAATCGA
GGTTGatataaagttttttcataCTTTGTTAgattacgtaatttccgcca
tcaTGGAAGCAAAANGACATACAATCGAGGttgatataaatttttttcat
actttgttagattacgtaatttccgccatcatggaagcaaacgttcgatt
tgggTAAGGAATCGCcttacagattcgaacgtttactTACATACTAGCCG
AATTTACGCAACTTAACAAAACATGTAAAAGctttattgcaaaaaaaaat
attaaatacaCGGGAACGAGGTCTGATGTCCGTCGTGTATAATTTAAGGA
AATCATTTTTCTCTTTGACTTCATAGGAATTATGAGGACAGTGGATTCTG
TTTGCGTCGACCCAATATGCCGGAAAGTGGTGAAGCATCGCAGAGGTTTT
CAGTTCAACTACCGGACAGGATAGAAAACCGGACACCCGTCTTTCCGGAA
GACAGTTCGAGTGTTCATTCTTACGCTACCCGGTCTTCATCGATATACGT
TGACCCGGTCAAGTGGAATAATGCggaattcaaaaaaacttcatcagaca
aagacaaaaaattacaaaacaatGTTTTGGGTCGTGGCGCCCTATTAACA
AAATTTAAGACTAAAACAACGGTCGGACGAGATAAATCGGTTTTAAAACC
TGATCGCCCACACGGGGTGAATGTAGCACCTATACGTAAACCGTTTGGAC
GAGGAACTCTAATGGAAGCGGTGAAGAATTATAACGGAAAGAAGTGATAG
CGTTTGAAGTTTGTTGAGTGGAGGTTGAGCTTTCGTTGTGTTTGCTATTT
TGACGGTATTTATTACTCCAAAGACGCTCACTTTTTACCTCCGGATTGGT
TTTAAGACTGGTTTTAGACCTTGAGCGTATCATGGAACTGTGTTGTCTCG
ACTGATAAACTCCATCCAAAAGAATCTCCCTAATCTCTTTCAAAGTGACA
AAGTTCTCATCGGGACGCTACTTTTTTACTGACTTTGTACgcgctttttt
ctttttgcattttcataaaaaaaacgaaaatctttTGTATATATAGATAG
GTATACTTTAGGGTATATGATATTGTTTATCGTTTATATCTTTCAGTTTG
AAACTTGAGCCTCGGGTTTTTCTTCAGCTTCAGCTTGAATAGAGCCTAGT
GTTCTTGAAATGAGAGTTAGCGTGTTATTTAGTTCCGGCGACTAGACTTA
TTAATTTGGTTATTAAAACAGGGTGTATTTGAATTTTATCCATGATATCG
TTTATCCATTTACTGATAGGCTCGACCAATAAGGTATAACCGAAAGCTAG
AGTCCAGTCTCCTATGCAGGATTTAAAGCCACTTACTTCCTACATAAGTT
GCACGACCCGAGTGGTTTTCATGCAAATGCTGGAATAGATGTAAAATTTA
CCGGAAGATTCGAAAAATGTAGAGTCATTAGGCCGGTTTGGGGGACGGTT
TTCTTTTACGGGCCAATTTATCAAAAACTATAAAACGTAAAGAAAAGTGC
TCGATGCGTCATTCGAATTGGGACGCAAATTTTAGGGCTTCGCTTTTTCT
TACTTACCCAACTGGCCCACAACTTTCTTTCAACGTTTATGTATGTTCAA
AAAGATCCAtataacattagatgaacgttgaaacaacattgctTGCCAGC
TGGGTAGGTAAGATTGAGGATTCGCCTTTATCCTCCGGCTTGAAACTCGA
TGGAATAAAAAAGGGAGTCTTTCCAGTAAAGTTATTTTTATACAAAGAGT
GTCTGTATATCTTGATGTTTCATAGTTTGTAATCCGAA

Coding sequence (CDS) from alignment at sc0000041:595239..613626+

>TCONS_00004254 ID=TCONS_00004254|Name=TCONS_00004254|organism=Clytia hemisphaerica|type=CDS|length=4878bp|location=Sequence derived from alignment at sc0000041:595239..613626+ (Clytia hemisphaerica)
ATGAGTGATGAGACGTGGGACCCGAATGGTTCACTGGTTTGTCCATTTGA
CCCATTGCACATCATTTCTGTCAAACGATATCAATATCACATCATCAAAT
GTCGGAAGAACCACCCTAATAAAGATTTTGTACCATGCCCTTTCAATGCT
AAACATGTTGTTTTGCGTCCAGAACTCAAAACACATATAGCACATTGTCC
GAACAGGGTTGTTCTTGAGCATGACATTATGAAAGAGCAATGTCCGGAGA
CGGGGGAAAGTTACCGTTTGAAAGGAAAAACAGACATCCCACGTGGAAAT
TATCATGTGCCAGAAACCGATGAAAATTGGGATGATGAAATTGAAGAAAG
TATTACACAAAGATTCGAGGAGCATACGATTCAATCACGAAGGAATTATG
AGGACAGTGGATTCTGTTTGCGTCGACCCAATATGCCGGAAAGTGGTGAA
GCATCGCAGAGGTTTTCAGTTCAACTACCGGACAGGATAGAAAACCGGAC
ACCCGTCTTTCCGGAAGACAGTTCGAGTGTTCATTCTTACGCTACCCGGT
CTTCATCGATATACGTTGACCCGGTCAAGTGGAATAATGCggaattcaaa
aaaacttcatcagacaaagacaaaaaattacaaaacaatGTTTTGGGTCG
TGGCGCCCTATTAACAAAATTTAAGACTAAAACAACGGTCGGACGAGATA
AATCGGTTTTAAAACCTGATCGCCCACACGGGGTGAATGTAGCACCTATA
CGTAAACCGTTTGGACGAGGAACTCTAATGGAAGCGGTGAAGAATTATAA
CGGAAAGAAGTGAATGAGTGATGAGACGTGGGACCCGAATGGTTCACTGG
TTTGTCCATTTGACCCATTGCACATCATTTCTGTCAAACGATATCAATAT
CACATCATCAAATGTCGGAAGAACCACCCTAATAAAGATTTTGTACCATG
CCCTTTCAATGCTAAACATGTTGTTTTGCGTCCAGAACTCAAAACACATA
TAGCACATTGTCCGAACAGGGTTGTTCTTGAGCATGACATTATGAAAGAG
CAATGTCCGGAGACGGGGGAAAGTTACCGTTTGAAAGGAAAAACAGACAT
CCCACGTGGAAATTATCATGTGCCAGAAACCGATGAAAATTGGGATGATG
AAATTGAAGAAAGTATTACACAAAGATTCGAGGAGCATACGATTCAATCA
CGAAGGAATTATGAGGACAGTGGATTCTGTTTGCGTCGACCCAATATGCC
GGAAAGTGGTGAAGCATCGCAGAGGTTTTCAGTTCAACTACCGGACAGGA
TAGAAAACCGGACACCCGTCTTTCCGGAAGACAGTTCGAGTGTTCATTCT
TACGCTACCCGGTCTTCATCGATATACGTTGACCCGGTCAAGTGGAATAA
TGCggaattcaaaaaaacttcatcagacaaagacaaaaaattacaaaaca
atGTTTTGGGTCGTGGCGCCCTATTAACAAAATTTAAGACTAAAACAACG
GTCGGACGAGATAAATCGGTTTTAAAACCTGATCGCCCACACGGGGTGAA
TGTAGCACCTATACGTAAACCGTTTGGACGAGGAACTCTAATGGAAGCGG
TGAAGAATTATAACGGAAAGAAGTGAATGAGTGATGAGACGTGGGACCCG
AATGGTTCACTGGTTTGTCCATTTGACCCATTGCACATCATTTCTGTCAA
ACGATATCAATATCACATCATCAAATGTCGGAAGAACCACCCTAATAAAG
ATTTTGTACCATGCCCTTTCAATGCTAAACATGTTGTTTTGCGTCCAGAA
CTCAAAACACATATAGCACATTGTCCGAACAGGGTTGTTCTTGAGCATGA
CATTATGAAAGAGCAATGTCCGGAGACGGGGGAAAGTTACCGTTTGAAAG
GAAAAACAGACATCCCACGTGGAAATTATCATGTGCCAGAAACCGATGAA
AATTGGGATGATGAAATTGAAGAAAGTATTACACAAAGATTCGAGGAGCA
TACGATTCAATCACGAAGGAATTATGAGGACAGTGGATTCTGTTTGCGTC
GACCCAATATGCCGGAAAGTGGTGAAGCATCGCAGAGGTTTTCAGTTCAA
CTACCGGACAGGATAGAAAACCGGACACCCGTCTTTCCGGAAGACAGTTC
GAGTGTTCATTCTTACGCTACCCGGTCTTCATCGATATACGTTGACCCGG
TCAAGTGGAATAATGCggaattcaaaaaaacttcatcagacaaagacaaa
aaattacaaaacaatGTTTTGGGTCGTGGCGCCCTATTAACAAAATTTAA
GACTAAAACAACGGTCGGACGAGATAAATCGGTTTTAAAACCTGATCGCC
CACACGGGGTGAATGTAGCACCTATACGTAAACCGTTTGGACGAGGAACT
CTAATGGAAGCGGTGAAGAATTATAACGGAAAGAAGTGAATGAGTGATGA
GACGTGGGACCCGAATGGTTCACTGGTTTGTCCATTTGACCCATTGCACA
TCATTTCTGTCAAACGATATCAATATCACATCATCAAATGTCGGAAGAAC
CACCCTAATAAAGATTTTGTACCATGCCCTTTCAATGCTAAACATGTTGT
TTTGCGTCCAGAACTCAAAACACATATAGCACATTGTCCGAACAGGGTTG
TTCTTGAGCATGACATTATGAAAGAGCAATGTCCGGAGACGGGGGAAAGT
TACCGTTTGAAAGGAAAAACAGACATCCCACGTGGAAATTATCATGTGCC
AGAAACCGATGAAAATTGGGATGATGAAATTGAAGAAAGTATTACACAAA
GATTCGAGGAGCATACGATTCAATCACGAAGGAATTATGAGGACAGTGGA
TTCTGTTTGCGTCGACCCAATATGCCGGAAAGTGGTGAAGCATCGCAGAG
GTTTTCAGTTCAACTACCGGACAGGATAGAAAACCGGACACCCGTCTTTC
CGGAAGACAGTTCGAGTGTTCATTCTTACGCTACCCGGTCTTCATCGATA
TACGTTGACCCGGTCAAGTGGAATAATGCggaattcaaaaaaacttcatc
agacaaagacaaaaaattacaaaacaatGTTTTGGGTCGTGGCGCCCTAT
TAACAAAATTTAAGACTAAAACAACGGTCGGACGAGATAAATCGGTTTTA
AAACCTGATCGCCCACACGGGGTGAATGTAGCACCTATACGTAAACCGTT
TGGACGAGGAACTCTAATGGAAGCGGTGAAGAATTATAACGGAAAGAAGT
GAATGAGTGATGAGACGTGGGACCCGAATGGTTCACTGGTTTGTCCATTT
GACCCATTGCACATCATTTCTGTCAAACGATATCAATATCACATCATCAA
ATGTCGGAAGAACCACCCTAATAAAGATTTTGTACCATGCCCTTTCAATG
CTAAACATGTTGTTTTGCGTCCAGAACTCAAAACACATATAGCACATTGT
CCGAACAGGGTTGTTCTTGAGCATGACATTATGAAAGAGCAATGTCCGGA
GACGGGGGAAAGTTACCGTTTGAAAGGAAAAACAGACATCCCACGTGGAA
ATTATCATGTGCCAGAAACCGATGAAAATTGGGATGATGAAATTGAAGAA
AGTATTACACAAAGATTCGAGGAGCATACGATTCAATCACGAAGGAATTA
TGAGGACAGTGGATTCTGTTTGCGTCGACCCAATATGCCGGAAAGTGGTG
AAGCATCGCAGAGGTTTTCAGTTCAACTACCGGACAGGATAGAAAACCGG
ACACCCGTCTTTCCGGAAGACAGTTCGAGTGTTCATTCTTACGCTACCCG
GTCTTCATCGATATACGTTGACCCGGTCAAGTGGAATAATGCggaattca
aaaaaacttcatcagacaaagacaaaaaattacaaaacaatGTTTTGGGT
CGTGGCGCCCTATTAACAAAATTTAAGACTAAAACAACGGTCGGACGAGA
TAAATCGGTTTTAAAACCTGATCGCCCACACGGGGTGAATGTAGCACCTA
TACGTAAACCGTTTGGACGAGGAACTCTAATGGAAGCGGTGAAGAATTAT
AACGGAAAGAAGTGAATGAGTGATGAGACGTGGGACCCGAATGGTTCACT
GGTTTGTCCATTTGACCCATTGCACATCATTTCTGTCAAACGATATCAAT
ATCACATCATCAAATGTCGGAAGAACCACCCTAATAAAGATTTTGTACCA
TGCCCTTTCAATGCTAAACATGTTGTTTTGCGTCCAGAACTCAAAACACA
TATAGCACATTGTCCGAACAGGGTTGTTCTTGAGCATGACATTATGAAAG
AGCAATGTCCGGAGACGGGGGAAAGTTACCGTTTGAAAGGAAAAACAGAC
ATCCCACGTGGAAATTATCATGTGCCAGAAACCGATGAAAATTGGGATGA
TGAAATTGAAGAAAGTATTACACAAAGATTCGAGGAGCATACGATTCAAT
CACGAAGGAATTATGAGGACAGTGGATTCTGTTTGCGTCGACCCAATATG
CCGGAAAGTGGTGAAGCATCGCAGAGGTTTTCAGTTCAACTACCGGACAG
GATAGAAAACCGGACACCCGTCTTTCCGGAAGACAGTTCGAGTGTTCATT
CTTACGCTACCCGGTCTTCATCGATATACGTTGACCCGGTCAAGTGGAAT
AATGCggaattcaaaaaaacttcatcagacaaagacaaaaaattacaaaa
caatGTTTTGGGTCGTGGCGCCCTATTAACAAAATTTAAGACTAAAACAA
CGGTCGGACGAGATAAATCGGTTTTAAAACCTGATCGCCCACACGGGGTG
AATGTAGCACCTATACGTAAACCGTTTGGACGAGGAACTCTAATGGAAGC
GGTGAAGAATTATAACGGAAAGAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002361XLOC_002361Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004254-proteinTCONS_00004254-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004254-exon-sc0000041-1491911889:595239..595403TCONS_00004254-exon-sc0000041-1491911889:595239..595403Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1510915933:595239..595403TCONS_00004254-exon-sc0000041-1510915933:595239..595403Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1575043694:595239..595403TCONS_00004254-exon-sc0000041-1575043694:595239..595403Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1491911889:597993..598091TCONS_00004254-exon-sc0000041-1491911889:597993..598091Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1510915933:597993..598091TCONS_00004254-exon-sc0000041-1510915933:597993..598091Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1575043694:597993..598091TCONS_00004254-exon-sc0000041-1575043694:597993..598091Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1491911889:598420..598447TCONS_00004254-exon-sc0000041-1491911889:598420..598447Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1510915933:598420..598447TCONS_00004254-exon-sc0000041-1510915933:598420..598447Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1575043694:598420..598447TCONS_00004254-exon-sc0000041-1575043694:598420..598447Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1491911889:604932..605033TCONS_00004254-exon-sc0000041-1491911889:604932..605033Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1510915933:604932..605033TCONS_00004254-exon-sc0000041-1510915933:604932..605033Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1575043694:604932..605033TCONS_00004254-exon-sc0000041-1575043694:604932..605033Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1491911889:605710..605764TCONS_00004254-exon-sc0000041-1491911889:605710..605764Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1510915933:605710..605764TCONS_00004254-exon-sc0000041-1510915933:605710..605764Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1575043694:605710..605764TCONS_00004254-exon-sc0000041-1575043694:605710..605764Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1491911889:612165..613626TCONS_00004254-exon-sc0000041-1491911889:612165..613626Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1510915933:612165..613626TCONS_00004254-exon-sc0000041-1510915933:612165..613626Clytia hemisphaericaexon
TCONS_00004254-exon-sc0000041-1575043694:612165..613626TCONS_00004254-exon-sc0000041-1575043694:612165..613626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:595239..613626 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.6725	9.91953	4.22466	3.6021	5.53773	3.99836	5.33304	6.49807	6.09521	5.33063	5.08956	4.02592	4.69962	5.18294	4.11904	3.97579	4.19368	4.66728	1.92778	3.40852	4.33308	4.01078	11.9023	10.5819	8.19111	9.26779	3.37271	3.17239	6.91767	7.59017
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022776TRM13/UPF0224_CHHC_Znf_dom
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00004254 vs. Swiss-Prot (Human)
Match: GTSF1 (Gametocyte-specific factor 1 OS=Homo sapiens GN=GTSF1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.104e-18
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:   76 DPNGSLVCPFDPLHIISVKRYQYHIIKCRKNHPN--KDFVPCPFNAKHVVLRPELKTHIAHCPNRVVLEHDIMKEQCPETGESYRLKGKTDIPRGNYHVPETDENWDDEIEESITQRF 423
            DP   L CP+D  H I   R+ YH+IKCRKNHP+       CPFNA+H V R E+  HI+ C +R  +E D++        ++  L+ +T +    +  P  DE+WD ++ E  +  F
Sbjct:   10 DPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVASKLATCPFNARHQVPRAEISHHISSCDDRSCIEQDVV-------NQTRSLRQET-LAESTWQCPPCDEDWDKDLWEQTSTPF 119
The following BLAST results are available for this feature:
BLAST of TCONS_00004254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GTSF12.104e-1836.44Gametocyte-specific factor 1 OS=Homo sapiens GN=GT... [more]
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