TCONS_00004253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004253
Unique NameTCONS_00004253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1978

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004253 ID=TCONS_00004253|Name=TCONS_00004253|organism=Clytia hemisphaerica|type=transcript|length=1978bp
aaattatGGAGCGGCTAGACCCCTCTGAACAGTGAAATTTTGGGATAGGC
Aggccagacgtccgcgctcgataggatcgatcatcggaacggatcgatgg
attacttaacgatccggataggggATCGAtaaaggatcgatactcaagat
tttttaaagcttatgattagttatcgattatttatcgatctatcgtcgat
cttttatcgatctatcgaccctatcgactcatactcgatttacgatcgat
aacaaatcgattaacaatcgatgacgaatcgattaacgatcaatgacgaa
tcgattaacgatcgatgacgaatcgatatactcgattgaaatactagctc
aataatagatcaacgaaggatcgatactcaagactttttaatggctgaat
cttccatcgatctcctatccggatcgttaagtaatccatcgatcacatat
cgatccgtcatcgagccgttcctaTGATTGATCCTAttgagcgcggacgt
ctgggaTAGGGTCTGGAAAACAACTATTGATTTCAGTTAAGACAGAACCC
CCTGAGGACGGAGGCTGGAGGAGGACAAGAGGACGAGAACACAACTTATT
TGTGACCGCTGccttacaacaatacaatgctgacaagttgacaacAAATT
GAGAAGACAGTAATGCCTGAGAGATATTTATCTATCTATCCATCGATCTG
GAATGGCCTATATCCAGACGGTCAGTCTGTCAGTCAGTTGGTTggtccat
cgatcacatatcaaTCTGAAGATTTATGAATGGTCTTGATTATTAAATTA
TCTATTGATTATCAGAAGGGGTATCCAGCAGTCCATCATCGATTGACATT
GATTTGATTATCACAATTGATCATCGATCAGGAAAAAGTTATCGACTGTA
TCGAGTACTGACTGTATAAGGTTAATGTTGACATGCCTCTTCTTATTtca
acatccttctttatagataggtATCTGGAAATAATAGGGAAGTTAGAATC
ATTTATAGTCTCCTCAACTGATTGCTTGTGCtagtttcaatcagctattC
CGACCCTCCTATTATTcctctctaaagaaggatgtcaaaataagaaaagg
GTTGTTAACATTAGACACTTACTGTCGGAGGGAGAGTTTGGCTGTGGCAA
ACTTTCAATCAAACCCATAACTATTTTTCACCAAGTAATATTTActtcaa
aattaatttaaaaatacACCACAAAATATGTGGTGTAAATATCACAAAAG
CACCTACTGACAAAGTATTGACGACAAATTGACATGAGTGGAGGACAATT
gactaaaagataaaaaagaacTTACAAATACAATACAATAACTCACATCT
CTCATTATATATTACATACAACGAGACAGCTCACTTGACAGAAAGACAAT
ATACATCCAACATGACAGCTTTGCATATGACAACTTTAAAAAGTCCTATA
ATGAATTCCCAATAATGTCACTTTCAGGTTCAACAATTTCACTTCAAAGA
TACAGTCTAGCACATCTCACAAGGAAGGCAGctcgaaaacaaaaaaaaat
gcaacCAAATTAAGCAAAGttcAAAAGATAGTCCTTGGTTATTTTGGTGT
AGACGATTTGAAGACCTTGCCTGTTAGTAGCGATCGAATTCTCATTGATG
AACAACACCCACCTAATGAGATTATTCTGTTGAGTGAAGATGACATCAAA
TCGATAAAAGATTTACTCTCTGCTGATGCTTGGATAAAAGTATTGAAGAA
AGTTGTTGATCTCTCCGAGTCATGGAGCTGTCCAATATGTGAAACCAGCC
AATATATTGGAATGATTGAATGTGATTTATGCAACGTCTGGTATCATATG
GATTGCGTCAAGCTGCAACAAGAAGAGGAATATTGGGTCTGCGAAAAATG
CCCAAGTCTCAGAAAAAGACCTCGCAAATAGACTAATGATAGTTCTTTAT
GATAGTTTACAAAGAAAGAATAACCAGT
Run BLAST on NCBI

transcript from alignment at sc0000041:582797..586344+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004253 ID=TCONS_00004253|Name=TCONS_00004253|organism=Clytia hemisphaerica|type=transcript|length=3548bp|location=Sequence derived from alignment at sc0000041:582797..586344+ (Clytia hemisphaerica)
aaattatGGAGCGGCTAGACCCCTCTGAACAGTGAAATTTTGGGATAGGC
Aggccagacgtccgcgctcgataggatcgatcatcggaacggatcgatgg
attacttaacgatccggataggggATCGAtaaaggatcgatactcaagat
tttttaaagcttatgattagttatcgattatttatcgatctatcgtcgat
cttttatcgatctatcgaccctatcgactcatactcgatttacgatcgat
aacaaatcgattaacaatcgatgacgaatcgattaacgatcaatgacgaa
tcgattaacgatcgatgacgaatcgatatactcgattgaaatactagctc
aataatagatcaacgaaggatcgatactcaagactttttaatggctgaat
cttccatcgatctcctatccggatcgttaagtaatccatcgatcacatat
cgatccgtcatcgagccgttcctaTGATTGATCCTAttgagcgcggacgt
ctgggaTAGGGTCTGGAAAACAACTATTGATTTCAGTTAAGACAGAACCC
CCTGAGGACGGAGGCTGGAGGAGGACAAGAGGACGAGAACACAACTTATT
TGTGACCGCTGccttacaacaatacaatgctgacaagttgacaacAAATT
GAGAAGACAGTAATGCCTGAGAGATATTTATCTATCTATCCATCGATCTG
GAATGGCCTATATCCAGACGGTCAGTCTGTCAGTCAGTTGGTTggtccat
cgatcacatatcaaTCTGAAGATTTATGAATGGTCTTGATTATTAAATTA
TCTATTGATTATCAGAAGGGGTATCCAGCAGTCCATCATCGATTGACATT
GATTTGATTATCACAATTGATCATCGATCAGGAAAAAGTTATCGACTGTA
TCGAGTACTGACTGTATAAGGTTAATGTTGACATGCCTCTTCTTATTtca
acatccttctttatagataggtATCTGGAAATAATAGGGAAGTTAGAATC
ATTTATAGTCTCCTCAACTGATTGCTTGTGCtagtttcaatcagctattC
CGACCCTCCTATTATTcctctctaaagaaggatgtcaaaataagaaaagg
GTTGTTAACATTAGACACTTACTGTCGGAGGGAGAGTTTGGCTGTGGCAA
ACTTTCAATCAAACCCATAACTATTTTTCACCAAGTAATATTTActtcaa
aattaatttaaaaatacACCACAAAATATGTGGTGTAAATATCACAAAAG
CACCTACTGACAAAGTATTGACGACAAATTGACATGAGTGGAGGACAATT
gactaaaagataaaaaagaacTTACAAATACAATACAATAACTCACATCT
CTCATTATATATTACATACAACGAGACAGCTCACTTGACAGAAAGACAAT
ATACATCCAACATGACAGCTTTGCATATGACAACTTTAAAAAGTCCTATA
ATGAATTCCCAATAATGTCACTTTCAGGTTCAACAATTTCACTTCAAAGA
TACAGTGTAagtaaatattcttaaattattattatttaacaCCAAAAATA
AGTAATTTGGAGTATTAAAGGGGCTCTTTGTGAAACTATTCGCGACAAGT
GATAAAAAGAACAGTAGGCTGCAAATCCATTCGTGAAAAATTTGACTATT
TATCAATGTAGGTGTAAGAAGTCATGTCAttcacacaacgttgtttcgac
gctTTTAGAACGTTCACAACGTTGCAATCCCAGTAAGTAAAGTGTTATAC
TGCGATTTTATTGcacatttcatttttctttacaGCTAGCACATCTCACA
AGGAAGGCAGctcgaaaacaaaaaaaaatgcaacCAAATTAAGCAAAGGT
ATTCATTAGAACAATATTCCCCGTATGGACAGAATTTCAATTACTTTTAA
TAAGGTCAATTCtgagttttaaaaatcattGCACATCCATCAAAATCAAA
TAAGCATCGTTCttatttcttgtcttttttgttttagttcAAAAGATAGT
CCTTGGTTATTTTGGTGTAGACGATTTGAAGACCTTGCCTGTTAGTAGCG
ATCGAATTCTCATTGATGAACAACACCCACCTAATGAGATTATTCTGTTG
AGTGAAGATGACATCAAATCGATAAAAGATTTACTCTCTGCTGATGCTTG
GATAAAAGTATTGAAGAAAGGTACGATTAATAATTCTATTCATGAGAGTA
CCTCGTTTTCTCTGAACACATGAAATGCATTCCAACCCCGGGAGCACTAG
TAATGAGGTGAATTTTTCCGAAATTCAAATATTAAAACTATCCATATCTA
TTTTCAGTTGTTGATCTCTCCGAGTCATGGAGCTGTCCAATATGTGAAAC
CAGCCAATATATTGGAATGATTGAATGTGATTTATGCAACGTCTGGTATC
ATATGTAAGTTAAAAGCATTATACTGGGTACACATTTTtcttaagaaact
agttttaccaagcaatCTTAAAGTTTCTTAAGAAATGGGCCTTTTGAGCc
ataaatgtttcttacatgtttctgaactttttgacataaccagcctcagc
atgtttcttagtttttactcttaggtgccaaataaacggtcccccccgct
tgttaatttttcgaaaattttccaacccccccggaccttattaggacccc
cctgtttattcattttaaagaatattttcagttggctaaaagaagtcacc
cttattttgctccaaaaagcctgattttagcctatatttaccttattttt
gggttttcataagtacaatttccaacccccccggaccttattaggacccc
cccgtttattaattttaaagaatattttcagttggctaaaagaagtcacc
cttattttgctccaaaaagcctgattttagcctatatttaccttattttt
gggttttcataagtacaatttccaaccctcctggcaattaggtccccccc
gtttattgaaatttcaaaaattttccaacccccccgtttattcgaacccc
cccgtttatttaaatttcaaaaattttccatcccccccgtttattgaaat
ttcaaaaattttccaacccccccgtttattcgaacccccccgtttatttg
gcacctaagagtaggcattctgagcctcatgtttcttaaaactGAAGTGC
GTTTCTTAAAAAGAACCCAAAAACTGTTGGTATATAATTTTTAGACTTTT
CGGTTCAGTTGTTCTCAAGTTAAGTTTTTGAAGTCAAATTTTGCCTTTGA
AAAAGCccgaaaacaaaacaaaatcaaattaaGAATCTTTAGCAAATTTT
GACACAAAATTCCTTTCCTCGTTAAAATCTTAGTTTCGCTATACTAATTT
GAGGTCGTTGTACTGTTTGCCCATCTTCGTGCTATGATGATAAAATTGAT
AATCGATTTATTTACACAGGGATTGCGTCAAGCTGCAACAAGAAGAGGAA
TATTGGGTCTGCGAAAAATGCCCAAGTCTCAGAAAAAGACCTCGCAAATA
GACTAATGATAGTTCTTTATGATAGTTTACAAAGAAAGAATAACCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002360XLOC_002360Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004253-exon-sc0000041-1491911889:582797..584302TCONS_00004253-exon-sc0000041-1491911889:582797..584302Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1510915933:582797..584302TCONS_00004253-exon-sc0000041-1510915933:582797..584302Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1575043694:582797..584302TCONS_00004253-exon-sc0000041-1575043694:582797..584302Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1491911889:584582..584644TCONS_00004253-exon-sc0000041-1491911889:584582..584644Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1510915933:584582..584644TCONS_00004253-exon-sc0000041-1510915933:584582..584644Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1575043694:584582..584644TCONS_00004253-exon-sc0000041-1575043694:584582..584644Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1491911889:584784..584966TCONS_00004253-exon-sc0000041-1491911889:584784..584966Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1510915933:584784..584966TCONS_00004253-exon-sc0000041-1510915933:584784..584966Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1575043694:584784..584966TCONS_00004253-exon-sc0000041-1575043694:584784..584966Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1491911889:585104..585200TCONS_00004253-exon-sc0000041-1491911889:585104..585200Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1510915933:585104..585200TCONS_00004253-exon-sc0000041-1510915933:585104..585200Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1575043694:585104..585200TCONS_00004253-exon-sc0000041-1575043694:585104..585200Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1491911889:586216..586344TCONS_00004253-exon-sc0000041-1491911889:586216..586344Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1510915933:586216..586344TCONS_00004253-exon-sc0000041-1510915933:586216..586344Clytia hemisphaericaexon
TCONS_00004253-exon-sc0000041-1575043694:586216..586344TCONS_00004253-exon-sc0000041-1575043694:586216..586344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:582797..586344 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.68077	2.3461	4.73667	4.84586	3.42623	2.66342	2.60774	3.19365	1.85704	2.247	2.3051	2.68156	2.59992	3.63864	1.56909	1.64187	1.38989	1.69901	1.96606	1.95718	2.65549	2.77775	1.11552	1.12742	3.13661	3.15241	2.36817	2.23784	1.82649	2.07274
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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