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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004249 ID=TCONS_00004249|Name=TCONS_00004249|organism=Clytia hemisphaerica|type=transcript|length=3645bp
CCCAGCAGCTGAAATCGTaacataaacaaacaaaatggcgtcTTTGAAAA
TGTTATCAACTCAAACTCCCTTTCTTATCCATTGATGTGCCTCGCGAGAA
GAGAGAAAAGAATTAAAGAACACGAATAATTTTTGTATTGCAGCTTGGTT
ATGTGTAAAGAATGTGTTATAAATCCATTTCCAAATCGAAATAAAACATG
CTTGGAATCAGGATCCTACTTGATCAATTTTAAAGGTTGCAAAGAGTGTG
GGAAGCGAGAATTGATCAAGATTTCGAATAAACAATTGAAAgaagatgat
gaagaagaaaatataaCCTACATTCACACGTGTGACAGTTGTGCGCATGT
CATTGCTGAACATGAGTATACTTTCTCGGTGATTGATGAAGAGCAAGAAT
ATTCGATGAACTGTTTATTATGTGGAACAGGTGAAGACACTGTACAACAG
TTTATCCCAAAAGAGAGACGTTGGAAAGGTAACAAACTGACTCAATAGCT
ATCTTTGCTTAATACCCAggtattttttattgttttgatattgttttaat
ttatttacactacatgttttcaaaaaaactattACTCCCACTAGCAAAAA
GAACTTTGCAATTTCTCACAGTTTTGAATCATAAGCAGAAGTTGCATTTG
TATCATAAGTCTTTTGTACCGAATTTGAGGCTTCTAAagatttcgaatct
ttcgagTGTTTACAACAATTCATTTGATTAGCCAAAATATACAACAAAGG
GTCAGCAATTGCTTTTAGTAGAATGAGAATCATTAAAACTCCATCTACAC
GTGCTCCACTGTACAATGAAACAGCTTCTCCACCTTTGAAGATCATGATC
AAAACAGGGGGTATGGTGAATAAGATATAAGCAACCATAATGGTAGACCA
GAAGCGTGTAATCTCTTTCTCATAATCACGTGATTCAGTTTTTGAACCAC
CAATCATACCAGCGTTTTGTCCACTCAACACTTTTTTGGTAACACTGATG
ATGTAGATGCTGGATAGGATGAGGAAGAAGTCAGTAATGATCATTATGAT
GGAGATGATTTCCAATGCTCCAGATCTGTTGATGAATATGGTTAACGTTG
GCAATGCACTGATAACCCACACAAACACCAATGCTAGAACAGTTGATCTC
TTTTTGACTTCACGATGTCGGAAGGGAAATTTGAGAGCCATGAAGCGTTC
CAATGATAATAGAATAACGTGAAGTAACGAAGCAATCAAACTGAATAAGA
TGATAAACGCCAGGACTAAGATCTTCTTGGAAGAGATTGGTTCACCTGCA
GCAAAACAAGCGAACTCCACTATCACAGCCGCCCCTGACGTGAAATTTGT
TAAACATAAACTGATAATGATTTGTTTATCGGGCGTCATCTTCCGCCCTC
TTCTCGATGTCTTTGAGTTTCTTCGTAACTTGTAGACCATCGTGAAGATG
GCTGTGGTGTTTAAAAACACGATGGTGAATCCTTCCAATATGATGAAAAT
AACGAGTCCTTTGAATGTTGCTTCTCCATCTTTGAACGTCATGTTGACTG
GAGTGTTTTAAGcgaatttataaaatttgataattttcaactCTATAATA
TTTAAATAGAAATTTACACCATGTTATAATAAATTTATAAGTGATGAGAC
ACAcaccaatgaagtaaaagcccaaagggctagaagcgaatctcttAAGA
AGGATTTGATACCActaaatcctacctaagttgcGTGGCCTTGAGCGGTC
CGCGTGGTTTTAATACAATCACcagattgaaattaaaatttgccgcttga
tttcaaaaaatatataactcgaaaacaaagaaaccactAAATTCaatacg
tcatcaaaaaaaaacgGCGTatatcttaaggcttcactttttcttttctg
aGAAAAGTTAAAGATTCGCTTCTACCCTNGATCTCTTTCTCATAATCACG
TGATTCAGTTTTTGAACCACCAATCATACCAGCGTTTTGTCCACTCAACA
CTTTCTTGGTAACACTGATGATGTAGATGCTGGATAGGATGAGGAAGAAG
TCAGTAATGATCATTATGATGGAGATGATTTCCAATGCTCCAGATCTGTT
GATGAATATGGTTAACGTTGGCAATGCACTGATAACCCACACAAACACCA
ATGCTAGAACAGTTGATCTCTTTTTGACTTCACGATGTCGGAAGGGAAAT
TTGAGAGCCATGAAGCGTTCCAATGATAATAGAATAACGTGAAGTAACGA
AGCAATCAAACTGAATAAGATGATAAACGCCAGGACTAAGATCTTCTTGG
AAGAGATTGGTTCACCTGCAGCAAAACAAGCGAACTCCACTATCACAGCC
GCCCCTGACGTGAAATTTGTTAAACATAAACTGATAATGATTTGTTTATC
GGGCGTCATCTTCCGCCCTCTTCTCGATGTCTTTGAGTTTCTTCGTAACT
TGTAGACCATCGTGAAGATGGCTGTGGTGTTTAAAAACACGATGGTGAAT
CCTTCCAATATGATGAAAATAACGAGTCCTTTGAATGTTGCTTCTCCATC
TTTGAACGTCATGTTGACTGGAGTCTTTTAAGcgaatttataaaatttga
taattttcaactCTATAATATTTAAATAGAAATTTACACCATGTTATAAT
AAATTTATAAGTGATGAGACACAcaccaatgaagtaaaagcccaaagggc
tagaagcgaatctcttAAGAAGGATTTGATACCActaaatcctacctaag
ttgcGTGGCCTTGAGCGGTCCGCGTGGTTTTAATACAATCACcagattga
aattaaaatttgccgcttgatttcaaaaaatatataactcgaaaacaaag
aaaccactAAATTCaatacgtcatcaaaaaaaaacgGCGTatatcttaag
gcttcactttttcttttctgaGAAAAGTTAAAGATTCGCTTCTACCCTTC
GGGCTTTCACTTCATTAATACATACCCGAGAAATCAAGACACAAGTGCCT
CTTCGTCTCACTCGTAATGAACGAGAgatgtattttttaaaaatgagaTT
CAAATAAAGTTTCCAAAGCGACTCTCTTCCTCTTTGGTTTGTTTACCTTT
ATAAAActtcatcaaaacaaacaacctGAACGTCATCAGTCAAAACCACC
AGAAAGATTCTTTCAACTTATCACTACCTCATATCGACTTTATATGGCGA
TAAAAGTCAACATTGCTCTTTTCCCTCCTCTTCTCTCGAGTTACGTGATA
AAAAGATCTGTGATTTTTGTCGGTTGAGAAGTTTTCACCTTTCTGTTCGC
TGAATGCCCTTTTCATTATCACATACCCACGAGTCTTTAATTCCGATTTG
TAATATTCAACCACTTGCAATTTTATGAATGTCTCTTGTGAATTTATTCA
GATTTCTAAatggaatgttttttttcgattttttattcagtttatCCAAT
ATAACTTGTTATTCGCTGAAAAATTATACTAAAAATATCCAATTTCCATC
AAATTAATTCGTTCATTCCTTTATCAAACCTGTAATTAAGATATTACAAC
AAATTATCAAATTATTTATTGCTCCTCCTTCCTCCATTTAGCAAGCTATG
GTAGTACTTCAATCTTCAACTATTTTCGTAGTATTTTTCATCGCG Run BLAST on NCBI transcript from alignment at sc0000041:398797..405329+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004249 ID=TCONS_00004249|Name=TCONS_00004249|organism=Clytia hemisphaerica|type=transcript|length=6533bp|location=Sequence derived from alignment at sc0000041:398797..405329+ (Clytia hemisphaerica)
CCCAGCAGCTGAAATCGTaacataaacaaacaaaatggcgtcTTTGAAAA
TGTTATCAACTCAAACTCCCTTTCTTATCCATTGATGTGCCTCGCGAGAA
GAGAGAAAAGAATTAAAGAACACGAATAATTTTTGTATTGCAGCTTGGTT
ATGTGTAAAGAATGTGTTATAAATCCATTTCCAAATCGAAATAAAACATG
CTTGGAATCAGGATCCTACTTGATCAATTTTAAAGgtaaaacaaatttat
tttctagtCTAGCTTAGCTAGCTTGGTATGTCTTTTTTATTCTAATATAA
Actgggcactgggtttgcggactgacggtatgtgtgggccaaaaattggc
ttttaaaattgcaccctaccttacagtgcagcaaaaatgagtgaaaatca
tacccctagagcattttcccccaaattttcgatccctttcgtgcaaaaaa
tggtcaaaattctagcatttttggtcaaaatatctagatttttcaagagt
tttctgaaatttctacccttacagtgctgcatctctagtttttccgaccc
ttacagtgcattttaaacatattggaaaaggtacccttaggacccgcaca
tacccgtcggtccttttgcccagctgccccccccccaggtggtagacctt
ttgctattcAGCAGGATCTCATGTATATGTTGAATAACTACAGGGGGTTT
GTAGGGATTCGAAACACCATTTACCCGTCAAAATGTTGGGTGAGTCCTGG
AATCGGGGGCAAAAAGATGTGGGATGGGGATGTGCCGCTTGGTTAGGGTA
CCTTTATTTATCTTCTCACCTCCATGAGTCACATGAGTCCACAGTAGGGC
AGGGtctcaaaaacaacaaattaaagaaattagTCCTTCTTAAGGTACGT
TTTTGGGGGAATTACATCATCATCTTCAGCCTCATCATAGACATATTCAT
ATGTCTAtggtcccattcagggtcacattttcgaacctcagcgacACACC
CCGTCAATATTTGATATTTCCTAGCTTGAATGATTGCAGATTCCGCCTTG
AAACAAGCGAATTTTTAAGAGTGAAACAACATACattaaaacaccccctt
ctcacagattcGGTgagatttttcagccagtgggggtagaAATAGCAGAC
CAAAACTCaacggggattgatattcccatttcGGTCATGACTGGGGATTC
GAATTCCATTGTTTCTGAgcaagaaaattcagtgggggtgGAAAAAATAC
CAGAATAATTTGCAGTAAggattactttaatcgtagaaattttagcgaga
ctaattttagcgttttagcgagttttccctattttcgctaaaataaatct
cgctaaaatttatccgcgcgaaatttctggttatattgccttgatacatt
tttatcaataggaagggtttcagtgcgaAAAAATGCTAGAACATAAATTC
AATCAATAATGTTAATacaagtattcgctaaaatttatccacgcgaaatt
ttttgaaatcgtgattcgctaaaataaatccaaaaaaaatcaagattttc
ctgagtCGCTattatacgctaaaattagtctcgctaaaatttctacgatt
aaagtagcataaaacataaaataccAAATAGTATGTACGAAAGGTAAAAC
ACTcggagaaaaaattaaaattaaatttaaaaaaatcattgaaatgaAAC
ACAAAATAGTTAATGTTAATCGTTTCTGAGAAACTTTAATGGTATTTTAC
AATCTAATCGAAAACGGGTTCTTATTGAATACAGTAGTATACAGTATATT
GATTTAAAGAGCGATCctgtaaatatattttaaagcggtgaaaatttttt
tttttcaatacgtCCATTAAAAAGTGAATGGACTTTACCTATTAAAGTAG
CGATAAATGTCTAAAACACTATATAAACTTTTTAATGAGGTCAGATAGAA
TTTAGAATTTCCcactaaattttaatttttcccgccatccgccaaagtaa
attcccgccaaaatttcttcccctgAAGGTATATTAAGAATTTGCTTTTT
GATAGGTTGCAAAGAGTGTGGGAAGCGAGAATTGATCAAGATTTCGAATA
AACAATTGAAAgaagatgatgaagaagaaaatataaCCTACATTCACACG
TGTGACAGTTGTGCGCATGTCATTGCTGAACATGAGTATACTTTCTCGGT
GATTGATGAAGAGCAAGAATATTCGATGAACTGTTTATTATGTGGAACAG
GTGAAGACACTGTACAACAGTTTATCCCAAAAGGTAGTGAAAGGTGAATG
GGACACCTCAACTTGTCAATGTTCGCAAATTCACTTCAGAATGGTCATTT
TTATTAATGATAaagttttttaaagctttttataaTATTGATTATTGTAC
CTGGGgttaaatttcagcaaaatgtGATCGTTAGAGAGACAAAAAGTACC
CCCtccataggcgtagcgagatacactgcaaaatttatgagggagtgcag
acgtttatgataTATTCactatcttttgataaaacaaagacaataattac
atgtcgtaaaaaccgctctcacccataaattttgcagggtatctcgctac
gtcTATGCCCTCAGATACGTGCTTTCCTAAagctgacccttagagagatt
atTTTGACACTATGCTACTTTTGTAACCCTAGAGAGACGTTGGAAAGGTA
ACAAACTGACTCAATAGCTATCTTTGCTTAATACCCAggtattttttatt
gttttgatattgttttaatttatttacactacatgttttcaaaaaaacta
ttACTCCCACTAGCAAAAAGAACTTTGCAATTTCTCACAGTTTTGAATCA
TAAGCAGAAGTTGCATTTGTATCATAAGTCTTTTGTACCGAATTTGAGGC
TTCTAAagatttcgaatctttcgagTGTTTACAACAATTCATTTGATTAG
CCAAAATATACAACAAAGGGTCAGCAATTGCTTTTAGTAGAATGAGAATC
ATTAAAACTCCATCTACACGTGCTCCACTGTACAATGAAACAGCTTCTCC
ACCTTTGAAGATCATGATCAAAACAGNAAATTTCAGCAAAATGTGATCGT
TAGAGAGACAAAAAGTACCCCCtccataggcgtagcgagatacactgcaa
aatttatgagggagtgcagacgtttatgataTATTCactatcttttgata
aaacaaagacaataattacatgtcgtaaaaaccgctctcacccataaatt
ttgcagggtatctcgctacgtcTATGCCCTCAGATACGTGCTTTCCTAAa
gctgacccttagagagattatTTTGACACTATGCTACTTTTGTAACCCTA
GAGAGACGTTGGAAAGGTAACAAACTGACTCAATAGCTATCTTTGCTTAA
TACCCAggtattttttattgttttgatattgttttaatttatttacacta
catgttttcaaaaaaactattACTCCCACTAGCAAAAAGAACTTTGCAAT
TTCTCACAGTTTTGAATCATAAGCAGAAGTTGCATTTGTATCATAAGTCT
TTTGTACCGAATTTGAGGCTTCTAAagatttcgaatctttcgagTGTTTA
CAACAATTCATTTGATTAGCCAAAATATACAACAAAGGGTCAGCAATTGC
TTTTAGTAGAATGAGAATCATTAAAACTCCATCTACACGTGCTCCACTGT
ACAATGAAACAGCTTCTCCACCTTTGAAGATCATGATCAAAACAGGGGGT
ATGGTGAATAAGATATAAGCAACCATAATGGTAGACCAGAAGCGTGTAAT
CTCTTTCTCATAATCACGTGATTCAGTTTTTGAACCACCAATCATACCAG
CGTTTTGTCCACTCAACACTTTTTTGGTAACACTGATGATGTAGATGCTG
GATAGGATGAGGAAGAAGTCAGTAATGATCATTATGATGGAGATGATTTC
CAATGCTCCAGATCTGTTGATGAATATGGTTAACGTTGGCAATGCACTGA
TAACCCACACAAACACCAATGCTAGAACAGTTGATCTCTTTTTGACTTCA
CGATGTCGGAAGGGAAATTTGAGAGCCATGAAGCGTTCCAATGATAATAG
AATAACGTGAAGTAACGAAGCAATCAAACTGAATAAGATGATAAACGCCA
GGACTAAGATCTTCTTGGAAGAGATTGGTTCACCTGCAGCAAAACAAGCG
AACTCCACTATCACAGCCGCCCCTGACGTGAAATTTGTTAAACATAAACT
GATAATGATTTGTTTATCGGGCGTCATCTTCCGCCCTCTTCTCGATGTCT
TTGAGTTTCTTCGTAACTTGTAGACCATCGTGAAGATGGCTGTGGTGTTT
AAAAACACGATGGTGAATCCTTCCAATATGATGAAAATAACGAGTCCTTT
GAATGTTGCTTCTCCATCTTTGAACGTCATGTTGACTGGAGTGTTTTAAG
cgaatttataaaatttgataattttcaactCTATAATATTTAAATAGAAA
TTTACACCATGTTATAATAAATTTATAAGTGATGAGACACAcaccaatga
agtaaaagcccaaagggctagaagcgaatctcttAAGAAGGATTTGATAC
CActaaatcctacctaagttgcGTGGCCTTGAGCGGTCCGCGTGGTTTTA
ATACAATCACcagattgaaattaaaatttgccgcttgatttcaaaaaata
tataactcgaaaacaaagaaaccactAAATTCaatacgtcatcaaaaaaa
aacgGCGTatatcttaaggcttcactttttcttttctgaGAAAAGTTAAA
GATTCGCTTCTACCCTNGATCTCTTTCTCATAATCACGTGATTCAGTTTT
TGAACCACCAATCATACCAGCGTTTTGTCCACTCAACACTTTCTTGGTAA
CACTGATGATGTAGATGCTGGATAGGATGAGGAAGAAGTCAGTAATGATC
ATTATGATGGAGATGATTTCCAATGCTCCAGATCTGTTGATGAATATGGT
TAACGTTGGCAATGCACTGATAACCCACACAAACACCAATGCTAGAACAG
TTGATCTCTTTTTGACTTCACGATGTCGGAAGGGAAATTTGAGAGCCATG
AAGCGTTCCAATGATAATAGAATAACGTGAAGTAACGAAGCAATCAAACT
GAATAAGATGATAAACGCCAGGACTAAGATCTTCTTGGAAGAGATTGGTT
CACCTGCAGCAAAACAAGCGAACTCCACTATCACAGCCGCCCCTGACGTG
AAATTTGTTAAACATAAACTGATAATGATTTGTTTATCGGGCGTCATCTT
CCGCCCTCTTCTCGATGTCTTTGAGTTTCTTCGTAACTTGTAGACCATCG
TGAAGATGGCTGTGGTGTTTAAAAACACGATGGTGAATCCTTCCAATATG
ATGAAAATAACGAGTCCTTTGAATGTTGCTTCTCCATCTTTGAACGTCAT
GTTGACTGGAGTCTTTTAAGcgaatttataaaatttgataattttcaact
CTATAATATTTAAATAGAAATTTACACCATGTTATAATAAATTTATAAGT
GATGAGACACAcaccaatgaagtaaaagcccaaagggctagaagcgaatc
tcttAAGAAGGATTTGATACCActaaatcctacctaagttgcGTGGCCTT
GAGCGGTCCGCGTGGTTTTAATACAATCACcagattgaaattaaaatttg
ccgcttgatttcaaaaaatatataactcgaaaacaaagaaaccactAAAT
TCaatacgtcatcaaaaaaaaacgGCGTatatcttaaggcttcacttttt
cttttctgaGAAAAGTTAAAGATTCGCTTCTACCCTTCGGGCTTTCACTT
CATTAATACATACCCGAGAAATCAAGACACAAGTGCCTCTTCGTCTCACT
CGTAATGAACGAGAgatgtattttttaaaaatgagaTTCAAATAAAGTTT
CCAAAGCGACTCTCTTCCTCTTTGGTTTGTTTACCTTTATAAAActtcat
caaaacaaacaacctGAACGTCATCAGTCAAAACCACCAGAAAGATTCTT
TCAACTTATCACTACCTCATATCGACTTTATATGGCGATAAAAGTCAACA
TTGCTCTTTTCCCTCCTCTTCTCTCGAGTTACGTGATAAAAAGATCTGTG
ATTTTTGTCGGTTGAGAAGTTTTCACCTTTCTGTTCGCTGAATGCCCTTT
TCATTATCACATACCCACGAGTCTTTAATTCCGATTTGTAATATTCAACC
ACTTGCAATTTTATGAATGTCTCTTGTGAATTTATTCAGATTTCTAAatg
gaatgttttttttcgattttttattcagtttatCCAATATAACTTGTTAT
TCGCTGAAAAATTATACTAAAAATATCCAATTTCCATCAAATTAATTCGT
TCATTCCTTTATCAAACCTGTAATTAAGATATTACAACAAATTATCAAAT
TATTTATTGCTCCTCCTTCCTCCATTTAGCAAGCTATGGTAGTACTTCAA
TCTTCAACTATTTTCGTAGTATTTTTCATCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004249-exon-sc0000041-1491911889:398797..399031 | TCONS_00004249-exon-sc0000041-1491911889:398797..399031 | Clytia hemisphaerica | exon |
| TCONS_00004249-exon-sc0000041-1510915933:398797..399031 | TCONS_00004249-exon-sc0000041-1510915933:398797..399031 | Clytia hemisphaerica | exon |
| TCONS_00004249-exon-sc0000041-1575043694:398797..399031 | TCONS_00004249-exon-sc0000041-1575043694:398797..399031 | Clytia hemisphaerica | exon |
| TCONS_00004249-exon-sc0000041-1491911889:400852..401079 | TCONS_00004249-exon-sc0000041-1491911889:400852..401079 | Clytia hemisphaerica | exon |
| TCONS_00004249-exon-sc0000041-1510915933:400852..401079 | TCONS_00004249-exon-sc0000041-1510915933:400852..401079 | Clytia hemisphaerica | exon |
| TCONS_00004249-exon-sc0000041-1575043694:400852..401079 | TCONS_00004249-exon-sc0000041-1575043694:400852..401079 | Clytia hemisphaerica | exon |
| TCONS_00004249-exon-sc0000041-1491911889:402148..405329 | TCONS_00004249-exon-sc0000041-1491911889:402148..405329 | Clytia hemisphaerica | exon |
| TCONS_00004249-exon-sc0000041-1510915933:402148..405329 | TCONS_00004249-exon-sc0000041-1510915933:402148..405329 | Clytia hemisphaerica | exon |
| TCONS_00004249-exon-sc0000041-1575043694:402148..405329 | TCONS_00004249-exon-sc0000041-1575043694:402148..405329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:398797..405329 + |
Blast
BLAST of TCONS_00004249 vs. Swiss-Prot (Human)
Match: CHUR (Protein Churchill OS=Homo sapiens GN=CHURC1 PE=1 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 1.071e-34 Identity = 61/109 (55.96%), Postives = 79/109 (72.48%), Query Frame = 1
Query: 145 LVMCKECVINPFPNRNKTCLESGSYLINFKGCKECGKRELIKISNKQLKEDDEEENITYIHTCDSCAHVIAEHEYTFSVIDEEQEYSMNCLLCGTGEDTVQQFIPKERR 471
+ MC +CV +PNR TCLE+GS+L+NF GC C KR+ + I+NK LKE+D EE +TY H C +C HVIA HEYTFS++DE QEY+M CLLCG EDT+ +P + R
Sbjct: 26 VAMCGDCVEKEYPNRGNTCLENGSFLLNFTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHVIARHEYTFSIMDEFQEYTMLCLLCGKAEDTI-SILPDDPR 133
The following BLAST results are available for this feature:
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