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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004248 ID=TCONS_00004248|Name=TCONS_00004248|organism=Clytia hemisphaerica|type=transcript|length=3612bp
CCCAGCAGCTGAAATCGTaacataaacaaacaaaatggcgtcTTTGAAAA
TGTTATCAACTCAAACTCCCTTTCTTATCCATTGATGTGCCTCGCGAGAA
GAGAGAAAAGAATTAAAGAACACGAATAATTTTTGTATTGCAGCTTGGTT
ATGTGTAAAGAATGTGTTATAAATCCATTTCCAAATCGAAATAAAACATG
CTTGGAATCAGGATCCTACTTGATCAATTTTAAAGGTTGCAAAGAGTGTG
GGAAGCGAGAATTGATCAAGATTTCGAATAAACAATTGAAAgaagatgat
gaagaagaaaatataaCCTACATTCACACGTGTGACAGTTGTGCGCATGT
CATTGCTGAACATGAGTATACTTTCTCGGTGATTGATGAAGAGCAAGAAT
ATTCGATGAACTGTTTATTATGTGGAACAGAGAGACGTTGGAAAGGTAAC
AAACTGACTCAATAGCTATCTTTGCTTAATACCCAggtattttttattgt
tttgatattgttttaatttatttacactacatgttttcaaaaaaactatt
ACTCCCACTAGCAAAAAGAACTTTGCAATTTCTCACAGTTTTGAATCATA
AGCAGAAGTTGCATTTGTATCATAAGTCTTTTGTACCGAATTTGAGGCTT
CTAAagatttcgaatctttcgagTGTTTACAACAATTCATTTGATTAGCC
AAAATATACAACAAAGGGTCAGCAATTGCTTTTAGTAGAATGAGAATCAT
TAAAACTCCATCTACACGTGCTCCACTGTACAATGAAACAGCTTCTCCAC
CTTTGAAGATCATGATCAAAACAGGGGGTATGGTGAATAAGATATAAGCA
ACCATAATGGTAGACCAGAAGCGTGTAATCTCTTTCTCATAATCACGTGA
TTCAGTTTTTGAACCACCAATCATACCAGCGTTTTGTCCACTCAACACTT
TTTTGGTAACACTGATGATGTAGATGCTGGATAGGATGAGGAAGAAGTCA
GTAATGATCATTATGATGGAGATGATTTCCAATGCTCCAGATCTGTTGAT
GAATATGGTTAACGTTGGCAATGCACTGATAACCCACACAAACACCAATG
CTAGAACAGTTGATCTCTTTTTGACTTCACGATGTCGGAAGGGAAATTTG
AGAGCCATGAAGCGTTCCAATGATAATAGAATAACGTGAAGTAACGAAGC
AATCAAACTGAATAAGATGATAAACGCCAGGACTAAGATCTTCTTGGAAG
AGATTGGTTCACCTGCAGCAAAACAAGCGAACTCCACTATCACAGCCGCC
CCTGACGTGAAATTTGTTAAACATAAACTGATAATGATTTGTTTATCGGG
CGTCATCTTCCGCCCTCTTCTCGATGTCTTTGAGTTTCTTCGTAACTTGT
AGACCATCGTGAAGATGGCTGTGGTGTTTAAAAACACGATGGTGAATCCT
TCCAATATGATGAAAATAACGAGTCCTTTGAATGTTGCTTCTCCATCTTT
GAACGTCATGTTGACTGGAGTGTTTTAAGcgaatttataaaatttgataa
ttttcaactCTATAATATTTAAATAGAAATTTACACCATGTTATAATAAA
TTTATAAGTGATGAGACACAcaccaatgaagtaaaagcccaaagggctag
aagcgaatctcttAAGAAGGATTTGATACCActaaatcctacctaagttg
cGTGGCCTTGAGCGGTCCGCGTGGTTTTAATACAATCACcagattgaaat
taaaatttgccgcttgatttcaaaaaatatataactcgaaaacaaagaaa
ccactAAATTCaatacgtcatcaaaaaaaaacgGCGTatatcttaaggct
tcactttttcttttctgaGAAAAGTTAAAGATTCGCTTCTACCCTNGATC
TCTTTCTCATAATCACGTGATTCAGTTTTTGAACCACCAATCATACCAGC
GTTTTGTCCACTCAACACTTTCTTGGTAACACTGATGATGTAGATGCTGG
ATAGGATGAGGAAGAAGTCAGTAATGATCATTATGATGGAGATGATTTCC
AATGCTCCAGATCTGTTGATGAATATGGTTAACGTTGGCAATGCACTGAT
AACCCACACAAACACCAATGCTAGAACAGTTGATCTCTTTTTGACTTCAC
GATGTCGGAAGGGAAATTTGAGAGCCATGAAGCGTTCCAATGATAATAGA
ATAACGTGAAGTAACGAAGCAATCAAACTGAATAAGATGATAAACGCCAG
GACTAAGATCTTCTTGGAAGAGATTGGTTCACCTGCAGCAAAACAAGCGA
ACTCCACTATCACAGCCGCCCCTGACGTGAAATTTGTTAAACATAAACTG
ATAATGATTTGTTTATCGGGCGTCATCTTCCGCCCTCTTCTCGATGTCTT
TGAGTTTCTTCGTAACTTGTAGACCATCGTGAAGATGGCTGTGGTGTTTA
AAAACACGATGGTGAATCCTTCCAATATGATGAAAATAACGAGTCCTTTG
AATGTTGCTTCTCCATCTTTGAACGTCATGTTGACTGGAGTCTTTTAAGc
gaatttataaaatttgataattttcaactCTATAATATTTAAATAGAAAT
TTACACCATGTTATAATAAATTTATAAGTGATGAGACACAcaccaatgaa
gtaaaagcccaaagggctagaagcgaatctcttAAGAAGGATTTGATACC
ActaaatcctacctaagttgcGTGGCCTTGAGCGGTCCGCGTGGTTTTAA
TACAATCACcagattgaaattaaaatttgccgcttgatttcaaaaaatat
ataactcgaaaacaaagaaaccactAAATTCaatacgtcatcaaaaaaaa
acgGCGTatatcttaaggcttcactttttcttttctgaGAAAAGTTAAAG
ATTCGCTTCTACCCTTCGGGCTTTCACTTCATTAATACATACCCGAGAAA
TCAAGACACAAGTGCCTCTTCGTCTCACTCGTAATGAACGAGAgatgtat
tttttaaaaatgagaTTCAAATAAAGTTTCCAAAGCGACTCTCTTCCTCT
TTGGTTTGTTTACCTTTATAAAActtcatcaaaacaaacaacctGAACGT
CATCAGTCAAAACCACCAGAAAGATTCTTTCAACTTATCACTACCTCATA
TCGACTTTATATGGCGATAAAAGTCAACATTGCTCTTTTCCCTCCTCTTC
TCTCGAGTTACGTGATAAAAAGATCTGTGATTTTTGTCGGTTGAGAAGTT
TTCACCTTTCTGTTCGCTGAATGCCCTTTTCATTATCACATACCCACGAG
TCTTTAATTCCGATTTGTAATATTCAACCACTTGCAATTTTATGAATGTC
TCTTGTGAATTTATTCAGATTTCTAAatggaatgttttttttcgattttt
tattcagtttatCCAATATAACTTGTTATTCGCTGAAAAATTATACTAAA
AATATCCAATTTCCATCAAATTAATTCGTTCATTCCTTTATCAAACCTGT
AATTAAGATATTACAACAAATTATCAAATTATTTATTGCTCCTCCTTCCT
CCATTTAGCAAGCTATGGTAGTACTTCAATCTTCAACTATTTTCGTAGTA
TTTTTCATCGCG Run BLAST on NCBI transcript from alignment at sc0000041:398797..405329+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004248 ID=TCONS_00004248|Name=TCONS_00004248|organism=Clytia hemisphaerica|type=transcript|length=6533bp|location=Sequence derived from alignment at sc0000041:398797..405329+ (Clytia hemisphaerica)
CCCAGCAGCTGAAATCGTaacataaacaaacaaaatggcgtcTTTGAAAA
TGTTATCAACTCAAACTCCCTTTCTTATCCATTGATGTGCCTCGCGAGAA
GAGAGAAAAGAATTAAAGAACACGAATAATTTTTGTATTGCAGCTTGGTT
ATGTGTAAAGAATGTGTTATAAATCCATTTCCAAATCGAAATAAAACATG
CTTGGAATCAGGATCCTACTTGATCAATTTTAAAGgtaaaacaaatttat
tttctagtCTAGCTTAGCTAGCTTGGTATGTCTTTTTTATTCTAATATAA
Actgggcactgggtttgcggactgacggtatgtgtgggccaaaaattggc
ttttaaaattgcaccctaccttacagtgcagcaaaaatgagtgaaaatca
tacccctagagcattttcccccaaattttcgatccctttcgtgcaaaaaa
tggtcaaaattctagcatttttggtcaaaatatctagatttttcaagagt
tttctgaaatttctacccttacagtgctgcatctctagtttttccgaccc
ttacagtgcattttaaacatattggaaaaggtacccttaggacccgcaca
tacccgtcggtccttttgcccagctgccccccccccaggtggtagacctt
ttgctattcAGCAGGATCTCATGTATATGTTGAATAACTACAGGGGGTTT
GTAGGGATTCGAAACACCATTTACCCGTCAAAATGTTGGGTGAGTCCTGG
AATCGGGGGCAAAAAGATGTGGGATGGGGATGTGCCGCTTGGTTAGGGTA
CCTTTATTTATCTTCTCACCTCCATGAGTCACATGAGTCCACAGTAGGGC
AGGGtctcaaaaacaacaaattaaagaaattagTCCTTCTTAAGGTACGT
TTTTGGGGGAATTACATCATCATCTTCAGCCTCATCATAGACATATTCAT
ATGTCTAtggtcccattcagggtcacattttcgaacctcagcgacACACC
CCGTCAATATTTGATATTTCCTAGCTTGAATGATTGCAGATTCCGCCTTG
AAACAAGCGAATTTTTAAGAGTGAAACAACATACattaaaacaccccctt
ctcacagattcGGTgagatttttcagccagtgggggtagaAATAGCAGAC
CAAAACTCaacggggattgatattcccatttcGGTCATGACTGGGGATTC
GAATTCCATTGTTTCTGAgcaagaaaattcagtgggggtgGAAAAAATAC
CAGAATAATTTGCAGTAAggattactttaatcgtagaaattttagcgaga
ctaattttagcgttttagcgagttttccctattttcgctaaaataaatct
cgctaaaatttatccgcgcgaaatttctggttatattgccttgatacatt
tttatcaataggaagggtttcagtgcgaAAAAATGCTAGAACATAAATTC
AATCAATAATGTTAATacaagtattcgctaaaatttatccacgcgaaatt
ttttgaaatcgtgattcgctaaaataaatccaaaaaaaatcaagattttc
ctgagtCGCTattatacgctaaaattagtctcgctaaaatttctacgatt
aaagtagcataaaacataaaataccAAATAGTATGTACGAAAGGTAAAAC
ACTcggagaaaaaattaaaattaaatttaaaaaaatcattgaaatgaAAC
ACAAAATAGTTAATGTTAATCGTTTCTGAGAAACTTTAATGGTATTTTAC
AATCTAATCGAAAACGGGTTCTTATTGAATACAGTAGTATACAGTATATT
GATTTAAAGAGCGATCctgtaaatatattttaaagcggtgaaaatttttt
tttttcaatacgtCCATTAAAAAGTGAATGGACTTTACCTATTAAAGTAG
CGATAAATGTCTAAAACACTATATAAACTTTTTAATGAGGTCAGATAGAA
TTTAGAATTTCCcactaaattttaatttttcccgccatccgccaaagtaa
attcccgccaaaatttcttcccctgAAGGTATATTAAGAATTTGCTTTTT
GATAGGTTGCAAAGAGTGTGGGAAGCGAGAATTGATCAAGATTTCGAATA
AACAATTGAAAgaagatgatgaagaagaaaatataaCCTACATTCACACG
TGTGACAGTTGTGCGCATGTCATTGCTGAACATGAGTATACTTTCTCGGT
GATTGATGAAGAGCAAGAATATTCGATGAACTGTTTATTATGTGGAACAG
GTGAAGACACTGTACAACAGTTTATCCCAAAAGGTAGTGAAAGGTGAATG
GGACACCTCAACTTGTCAATGTTCGCAAATTCACTTCAGAATGGTCATTT
TTATTAATGATAaagttttttaaagctttttataaTATTGATTATTGTAC
CTGGGgttaaatttcagcaaaatgtGATCGTTAGAGAGACAAAAAGTACC
CCCtccataggcgtagcgagatacactgcaaaatttatgagggagtgcag
acgtttatgataTATTCactatcttttgataaaacaaagacaataattac
atgtcgtaaaaaccgctctcacccataaattttgcagggtatctcgctac
gtcTATGCCCTCAGATACGTGCTTTCCTAAagctgacccttagagagatt
atTTTGACACTATGCTACTTTTGTAACCCTAGAGAGACGTTGGAAAGGTA
ACAAACTGACTCAATAGCTATCTTTGCTTAATACCCAggtattttttatt
gttttgatattgttttaatttatttacactacatgttttcaaaaaaacta
ttACTCCCACTAGCAAAAAGAACTTTGCAATTTCTCACAGTTTTGAATCA
TAAGCAGAAGTTGCATTTGTATCATAAGTCTTTTGTACCGAATTTGAGGC
TTCTAAagatttcgaatctttcgagTGTTTACAACAATTCATTTGATTAG
CCAAAATATACAACAAAGGGTCAGCAATTGCTTTTAGTAGAATGAGAATC
ATTAAAACTCCATCTACACGTGCTCCACTGTACAATGAAACAGCTTCTCC
ACCTTTGAAGATCATGATCAAAACAGNAAATTTCAGCAAAATGTGATCGT
TAGAGAGACAAAAAGTACCCCCtccataggcgtagcgagatacactgcaa
aatttatgagggagtgcagacgtttatgataTATTCactatcttttgata
aaacaaagacaataattacatgtcgtaaaaaccgctctcacccataaatt
ttgcagggtatctcgctacgtcTATGCCCTCAGATACGTGCTTTCCTAAa
gctgacccttagagagattatTTTGACACTATGCTACTTTTGTAACCCTA
GAGAGACGTTGGAAAGGTAACAAACTGACTCAATAGCTATCTTTGCTTAA
TACCCAggtattttttattgttttgatattgttttaatttatttacacta
catgttttcaaaaaaactattACTCCCACTAGCAAAAAGAACTTTGCAAT
TTCTCACAGTTTTGAATCATAAGCAGAAGTTGCATTTGTATCATAAGTCT
TTTGTACCGAATTTGAGGCTTCTAAagatttcgaatctttcgagTGTTTA
CAACAATTCATTTGATTAGCCAAAATATACAACAAAGGGTCAGCAATTGC
TTTTAGTAGAATGAGAATCATTAAAACTCCATCTACACGTGCTCCACTGT
ACAATGAAACAGCTTCTCCACCTTTGAAGATCATGATCAAAACAGGGGGT
ATGGTGAATAAGATATAAGCAACCATAATGGTAGACCAGAAGCGTGTAAT
CTCTTTCTCATAATCACGTGATTCAGTTTTTGAACCACCAATCATACCAG
CGTTTTGTCCACTCAACACTTTTTTGGTAACACTGATGATGTAGATGCTG
GATAGGATGAGGAAGAAGTCAGTAATGATCATTATGATGGAGATGATTTC
CAATGCTCCAGATCTGTTGATGAATATGGTTAACGTTGGCAATGCACTGA
TAACCCACACAAACACCAATGCTAGAACAGTTGATCTCTTTTTGACTTCA
CGATGTCGGAAGGGAAATTTGAGAGCCATGAAGCGTTCCAATGATAATAG
AATAACGTGAAGTAACGAAGCAATCAAACTGAATAAGATGATAAACGCCA
GGACTAAGATCTTCTTGGAAGAGATTGGTTCACCTGCAGCAAAACAAGCG
AACTCCACTATCACAGCCGCCCCTGACGTGAAATTTGTTAAACATAAACT
GATAATGATTTGTTTATCGGGCGTCATCTTCCGCCCTCTTCTCGATGTCT
TTGAGTTTCTTCGTAACTTGTAGACCATCGTGAAGATGGCTGTGGTGTTT
AAAAACACGATGGTGAATCCTTCCAATATGATGAAAATAACGAGTCCTTT
GAATGTTGCTTCTCCATCTTTGAACGTCATGTTGACTGGAGTGTTTTAAG
cgaatttataaaatttgataattttcaactCTATAATATTTAAATAGAAA
TTTACACCATGTTATAATAAATTTATAAGTGATGAGACACAcaccaatga
agtaaaagcccaaagggctagaagcgaatctcttAAGAAGGATTTGATAC
CActaaatcctacctaagttgcGTGGCCTTGAGCGGTCCGCGTGGTTTTA
ATACAATCACcagattgaaattaaaatttgccgcttgatttcaaaaaata
tataactcgaaaacaaagaaaccactAAATTCaatacgtcatcaaaaaaa
aacgGCGTatatcttaaggcttcactttttcttttctgaGAAAAGTTAAA
GATTCGCTTCTACCCTNGATCTCTTTCTCATAATCACGTGATTCAGTTTT
TGAACCACCAATCATACCAGCGTTTTGTCCACTCAACACTTTCTTGGTAA
CACTGATGATGTAGATGCTGGATAGGATGAGGAAGAAGTCAGTAATGATC
ATTATGATGGAGATGATTTCCAATGCTCCAGATCTGTTGATGAATATGGT
TAACGTTGGCAATGCACTGATAACCCACACAAACACCAATGCTAGAACAG
TTGATCTCTTTTTGACTTCACGATGTCGGAAGGGAAATTTGAGAGCCATG
AAGCGTTCCAATGATAATAGAATAACGTGAAGTAACGAAGCAATCAAACT
GAATAAGATGATAAACGCCAGGACTAAGATCTTCTTGGAAGAGATTGGTT
CACCTGCAGCAAAACAAGCGAACTCCACTATCACAGCCGCCCCTGACGTG
AAATTTGTTAAACATAAACTGATAATGATTTGTTTATCGGGCGTCATCTT
CCGCCCTCTTCTCGATGTCTTTGAGTTTCTTCGTAACTTGTAGACCATCG
TGAAGATGGCTGTGGTGTTTAAAAACACGATGGTGAATCCTTCCAATATG
ATGAAAATAACGAGTCCTTTGAATGTTGCTTCTCCATCTTTGAACGTCAT
GTTGACTGGAGTCTTTTAAGcgaatttataaaatttgataattttcaact
CTATAATATTTAAATAGAAATTTACACCATGTTATAATAAATTTATAAGT
GATGAGACACAcaccaatgaagtaaaagcccaaagggctagaagcgaatc
tcttAAGAAGGATTTGATACCActaaatcctacctaagttgcGTGGCCTT
GAGCGGTCCGCGTGGTTTTAATACAATCACcagattgaaattaaaatttg
ccgcttgatttcaaaaaatatataactcgaaaacaaagaaaccactAAAT
TCaatacgtcatcaaaaaaaaacgGCGTatatcttaaggcttcacttttt
cttttctgaGAAAAGTTAAAGATTCGCTTCTACCCTTCGGGCTTTCACTT
CATTAATACATACCCGAGAAATCAAGACACAAGTGCCTCTTCGTCTCACT
CGTAATGAACGAGAgatgtattttttaaaaatgagaTTCAAATAAAGTTT
CCAAAGCGACTCTCTTCCTCTTTGGTTTGTTTACCTTTATAAAActtcat
caaaacaaacaacctGAACGTCATCAGTCAAAACCACCAGAAAGATTCTT
TCAACTTATCACTACCTCATATCGACTTTATATGGCGATAAAAGTCAACA
TTGCTCTTTTCCCTCCTCTTCTCTCGAGTTACGTGATAAAAAGATCTGTG
ATTTTTGTCGGTTGAGAAGTTTTCACCTTTCTGTTCGCTGAATGCCCTTT
TCATTATCACATACCCACGAGTCTTTAATTCCGATTTGTAATATTCAACC
ACTTGCAATTTTATGAATGTCTCTTGTGAATTTATTCAGATTTCTAAatg
gaatgttttttttcgattttttattcagtttatCCAATATAACTTGTTAT
TCGCTGAAAAATTATACTAAAAATATCCAATTTCCATCAAATTAATTCGT
TCATTCCTTTATCAAACCTGTAATTAAGATATTACAACAAATTATCAAAT
TATTTATTGCTCCTCCTTCCTCCATTTAGCAAGCTATGGTAGTACTTCAA
TCTTCAACTATTTTCGTAGTATTTTTCATCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004248-exon-sc0000041-1491911889:398797..399031 | TCONS_00004248-exon-sc0000041-1491911889:398797..399031 | Clytia hemisphaerica | exon |
| TCONS_00004248-exon-sc0000041-1510915933:398797..399031 | TCONS_00004248-exon-sc0000041-1510915933:398797..399031 | Clytia hemisphaerica | exon |
| TCONS_00004248-exon-sc0000041-1575043694:398797..399031 | TCONS_00004248-exon-sc0000041-1575043694:398797..399031 | Clytia hemisphaerica | exon |
| TCONS_00004248-exon-sc0000041-1491911889:400852..401046 | TCONS_00004248-exon-sc0000041-1491911889:400852..401046 | Clytia hemisphaerica | exon |
| TCONS_00004248-exon-sc0000041-1510915933:400852..401046 | TCONS_00004248-exon-sc0000041-1510915933:400852..401046 | Clytia hemisphaerica | exon |
| TCONS_00004248-exon-sc0000041-1575043694:400852..401046 | TCONS_00004248-exon-sc0000041-1575043694:400852..401046 | Clytia hemisphaerica | exon |
| TCONS_00004248-exon-sc0000041-1491911889:402148..405329 | TCONS_00004248-exon-sc0000041-1491911889:402148..405329 | Clytia hemisphaerica | exon |
| TCONS_00004248-exon-sc0000041-1510915933:402148..405329 | TCONS_00004248-exon-sc0000041-1510915933:402148..405329 | Clytia hemisphaerica | exon |
| TCONS_00004248-exon-sc0000041-1575043694:402148..405329 | TCONS_00004248-exon-sc0000041-1575043694:402148..405329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:398797..405329 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00004248 vs. Swiss-Prot (Human)
Match: CHUR (Protein Churchill OS=Homo sapiens GN=CHURC1 PE=1 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.324e-31 Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 1
Query: 145 LVMCKECVINPFPNRNKTCLESGSYLINFKGCKECGKRELIKISNKQLKEDDEEENITYIHTCDSCAHVIAEHEYTFSVIDEEQEYSMNCLLCG 426
+ MC +CV +PNR TCLE+GS+L+NF GC C KR+ + I+NK LKE+D EE +TY H C +C HVIA HEYTFS++DE QEY+M CLLCG
Sbjct: 26 VAMCGDCVEKEYPNRGNTCLENGSFLLNFTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHVIARHEYTFSIMDEFQEYTMLCLLCG 119
The following BLAST results are available for this feature:
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