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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004247 ID=TCONS_00004247|Name=TCONS_00004247|organism=Clytia hemisphaerica|type=transcript|length=3708bp
tgggtaaaagtaccccttttttaaacctgactgaaattcgagccgttact
agcaaccctgcggggcccaaggcgccgaNNNTACCCAGCAGCTGAAATCG
TaacataaacaaacaaaatggcgtcTTTGAAAATGTTATCAACTCAAACT
CCCTTTCTTATCCATTGATGTGCCTCGCGAGAAGAGAGAAAAGAATTAAA
GAACACGAATAATTTTTGTATTGCAGCTTGGTTATGTGTAAAGAATGTGT
TATAAATCCATTTCCAAATCGAAATAAAACATGCTTGGAATCAGGATCCT
ACTTGATCAATTTTAAAGGTTGCAAAGAGTGTGGGAAGCGAGAATTGATC
AAGATTTCGAATAAACAATTGAAAgaagatgatgaagaagaaaatataaC
CTACATTCACACGTGTGACAGTTGTGCGCATGTCATTGCTGAACATGAGT
ATACTTTCTCGGTGATTGATGAAGAGCAAGAATATTCGATGAACTGTTTA
TTATGTGGAACAGGTGAAGACACTGTACAACAGTTTATCCCAAAAGGTAG
TGAAAGGTGAATGGGACACCTCAACTTGTCAATGTTCGCAAATTCACTTC
AGAATGGTCATTTTTATTAATGATAaagttttttaaagctttttataaTA
TTGATTATTGTACCTGGGgttaaatttcagcaaaatgtGATCGTTAGAGA
GACAAAAAGTACCCCCtccataggcgtagcgagatacactgcaaaattta
tgagggagtgcagacgtttatgataTATTCactatcttttgataaaacaa
agacaataattacatgtcgtaaaaaccgctctcacccataaattttgcag
ggtatctcgctacgtcTATGCCCTCAGATACGTGCTTTCCTAAagctgac
ccttagagagattatTTTGACACTATGCTACTTTTGTAACCCTAGAGAGA
CGTTGGAAAGGTAACAAACTGACTCAATAGCTATCTTTGCTTAATACCCA
gTTTTTGAACCACCAATCATACCAGCGTTTTGTCCACTCAACACTTTTTT
GGTAACACTGATGATGTAGATGCTGGATAGGATGAGGAAGAAGTCAGTAA
TGATCATTATGATGGAGATGATTTCCAATGCTCCAGATCTGTTGATGAAT
ATGGTTAACGTTGGCAATGCACTGATAACCCACACAAACACCAATGCTAG
AACAGTTGATCTCTTTTTGACTTCACGATGTCGGAAGGGAAATTTGAGAG
CCATGAAGCGTTCCAATGATAATAGAATAACGTGAAGTAACGAAGCAATC
AAACTGAATAAGATGATAAACGCCAGGACTAAGATCTTCTTGGAAGAGAT
TGGTTCACCTGCAGCAAAACAAGCGAACTCCACTATCACAGCCGCCCCTG
ACGTGAAATTTGTTAAACATAAACTGATAATGATTTGTTTATCGGGCGTC
ATCTTCCGCCCTCTTCTCGATGTCTTTGAGTTTCTTCGTAACTTGTAGAC
CATCGTGAAGATGGCTGTGGTGTTTAAAAACACGATGGTGAATCCTTCCA
ATATGATGAAAATAACGAGTCCTTTGAATGTTGCTTCTCCATCTTTGAAC
GTCATGTTGACTGGAGTGTTTTAAGcgaatttataaaatttgataatttt
caactCTATAATATTTAAATAGAAATTTACACCATGTTATAATAAATTTA
TAAGTGATGAGACACAcaccaatgaagtaaaagcccaaagggctagaagc
gaatctcttAAGAAGGATTTGATACCActaaatcctacctaagttgcGTG
GCCTTGAGCGGTCCGCGTGGTTTTAATACAATCACcagattgaaattaaa
atttgccgcttgatttcaaaaaatatataactcgaaaacaaagaaaccac
tAAATTCaatacgtcatcaaaaaaaaacgGCGTatatcttaaggcttcac
tttttcttttctgaGAAAAGTTAAAGATTCGCTTCTACCCTNGATCTCTT
TCTCATAATCACGTGATTCAGTTTTTGAACCACCAATCATACCAGCGTTT
TGTCCACTCAACACTTTCTTGGTAACACTGATGATGTAGATGCTGGATAG
GATGAGGAAGAAGTCAGTAATGATCATTATGATGGAGATGATTTCCAATG
CTCCAGATCTGTTGATGAATATGGTTAACGTTGGCAATGCACTGATAACC
CACACAAACACCAATGCTAGAACAGTTGATCTCTTTTTGACTTCACGATG
TCGGAAGGGAAATTTGAGAGCCATGAAGCGTTCCAATGATAATAGAATAA
CGTGAAGTAACGAAGCAATCAAACTGAATAAGATGATAAACGCCAGGACT
AAGATCTTCTTGGAAGAGATTGGTTCACCTGCAGCAAAACAAGCGAACTC
CACTATCACAGCCGCCCCTGACGTGAAATTTGTTAAACATAAACTGATAA
TGATTTGTTTATCGGGCGTCATCTTCCGCCCTCTTCTCGATGTCTTTGAG
TTTCTTCGTAACTTGTAGACCATCGTGAAGATGGCTGTGGTGTTTAAAAA
CACGATGGTGAATCCTTCCAATATGATGAAAATAACGAGTCCTTTGAATG
TTGCTTCTCCATCTTTGAACGTCATGTTGACTGGAGTCTTTTAAGcgaat
ttataaaatttgataattttcaactCTATAATATTTAAATAGAAATTTAC
ACCATGTTATAATAAATTTATAAGTGATGAGACACAcaccaatgaagtaa
aagcccaaagggctagaagcgaatctcttAAGAAGGATTTGATACCActa
aatcctacctaagttgcGTGGCCTTGAGCGGTCCGCGTGGTTTTAATACA
ATCACcagattgaaattaaaatttgccgcttgatttcaaaaaatatataa
ctcgaaaacaaagaaaccactAAATTCaatacgtcatcaaaaaaaaacgG
CGTatatcttaaggcttcactttttcttttctgaGAAAAGTTAAAGATTC
GCTTCTACCCTTCGGGCTTTCACTTCATTAATACATACCCGAGAAATCAA
GACACAAGTGCCTCTTCGTCTCACTCGTAATGAACGAGAgatgtattttt
taaaaatgagaTTCAAATAAAGTTTCCAAAGCGACTCTCTTCCTCTTTGG
TTTGTTTACCTTTATAAAActtcatcaaaacaaacaacctGAACGTCATC
AGTCAAAACCACCAGAAAGATTCTTTCAACTTATCACTACCTCATATCGA
CTTTATATGGCGATAAAAGTCAACATTGCTCTTTTCCCTCCTCTTCTCTC
GAGTTACGTGATAAAAAGATCTGTGATTTTTGTCGGTTGAGAAGTTTTCA
CCTTTCTGTTCGCTGAATGCCCTTTTCATTATCACATACCCACGAGTCTT
TAATTCCGATTTGTAATATTCAACCACTTGCAATTTTATGAATGTCTCTT
GTGAATTTATTCAGATTTCTAAatggaatgttttttttcgattttttatt
cagtttatCCAATATAACTTGTTATTCGCTGAAAAATTATACTAAAAATA
TCCAATTTCCATCAAATTAATTCGTTCATTCCTTTATCAAACCTGTAATT
AAGATATTACAACAAATTATCAAATTATTTATTGCTCCTCCTTCCTCCAT
TTAGCAAGCTATGGTAGTACTTCAATCTTCAACTATTTTCGTAGTATTTT
TCATCGCG Run BLAST on NCBI transcript from alignment at sc0000041:398714..405329+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004247 ID=TCONS_00004247|Name=TCONS_00004247|organism=Clytia hemisphaerica|type=transcript|length=6616bp|location=Sequence derived from alignment at sc0000041:398714..405329+ (Clytia hemisphaerica)
tgggtaaaagtaccccttttttaaacctgactgaaattcgagccgttact
agcaaccctgcggggcccaaggcgccgaNNNTACCCAGCAGCTGAAATCG
TaacataaacaaacaaaatggcgtcTTTGAAAATGTTATCAACTCAAACT
CCCTTTCTTATCCATTGATGTGCCTCGCGAGAAGAGAGAAAAGAATTAAA
GAACACGAATAATTTTTGTATTGCAGCTTGGTTATGTGTAAAGAATGTGT
TATAAATCCATTTCCAAATCGAAATAAAACATGCTTGGAATCAGGATCCT
ACTTGATCAATTTTAAAGgtaaaacaaatttattttctagtCTAGCTTAG
CTAGCTTGGTATGTCTTTTTTATTCTAATATAAActgggcactgggtttg
cggactgacggtatgtgtgggccaaaaattggcttttaaaattgcaccct
accttacagtgcagcaaaaatgagtgaaaatcatacccctagagcatttt
cccccaaattttcgatccctttcgtgcaaaaaatggtcaaaattctagca
tttttggtcaaaatatctagatttttcaagagttttctgaaatttctacc
cttacagtgctgcatctctagtttttccgacccttacagtgcattttaaa
catattggaaaaggtacccttaggacccgcacatacccgtcggtcctttt
gcccagctgccccccccccaggtggtagaccttttgctattcAGCAGGAT
CTCATGTATATGTTGAATAACTACAGGGGGTTTGTAGGGATTCGAAACAC
CATTTACCCGTCAAAATGTTGGGTGAGTCCTGGAATCGGGGGCAAAAAGA
TGTGGGATGGGGATGTGCCGCTTGGTTAGGGTACCTTTATTTATCTTCTC
ACCTCCATGAGTCACATGAGTCCACAGTAGGGCAGGGtctcaaaaacaac
aaattaaagaaattagTCCTTCTTAAGGTACGTTTTTGGGGGAATTACAT
CATCATCTTCAGCCTCATCATAGACATATTCATATGTCTAtggtcccatt
cagggtcacattttcgaacctcagcgacACACCCCGTCAATATTTGATAT
TTCCTAGCTTGAATGATTGCAGATTCCGCCTTGAAACAAGCGAATTTTTA
AGAGTGAAACAACATACattaaaacacccccttctcacagattcGGTgag
atttttcagccagtgggggtagaAATAGCAGACCAAAACTCaacggggat
tgatattcccatttcGGTCATGACTGGGGATTCGAATTCCATTGTTTCTG
AgcaagaaaattcagtgggggtgGAAAAAATACCAGAATAATTTGCAGTA
Aggattactttaatcgtagaaattttagcgagactaattttagcgtttta
gcgagttttccctattttcgctaaaataaatctcgctaaaatttatccgc
gcgaaatttctggttatattgccttgatacatttttatcaataggaaggg
tttcagtgcgaAAAAATGCTAGAACATAAATTCAATCAATAATGTTAATa
caagtattcgctaaaatttatccacgcgaaattttttgaaatcgtgattc
gctaaaataaatccaaaaaaaatcaagattttcctgagtCGCTattatac
gctaaaattagtctcgctaaaatttctacgattaaagtagcataaaacat
aaaataccAAATAGTATGTACGAAAGGTAAAACACTcggagaaaaaatta
aaattaaatttaaaaaaatcattgaaatgaAACACAAAATAGTTAATGTT
AATCGTTTCTGAGAAACTTTAATGGTATTTTACAATCTAATCGAAAACGG
GTTCTTATTGAATACAGTAGTATACAGTATATTGATTTAAAGAGCGATCc
tgtaaatatattttaaagcggtgaaaatttttttttttcaatacgtCCAT
TAAAAAGTGAATGGACTTTACCTATTAAAGTAGCGATAAATGTCTAAAAC
ACTATATAAACTTTTTAATGAGGTCAGATAGAATTTAGAATTTCCcacta
aattttaatttttcccgccatccgccaaagtaaattcccgccaaaatttc
ttcccctgAAGGTATATTAAGAATTTGCTTTTTGATAGGTTGCAAAGAGT
GTGGGAAGCGAGAATTGATCAAGATTTCGAATAAACAATTGAAAgaagat
gatgaagaagaaaatataaCCTACATTCACACGTGTGACAGTTGTGCGCA
TGTCATTGCTGAACATGAGTATACTTTCTCGGTGATTGATGAAGAGCAAG
AATATTCGATGAACTGTTTATTATGTGGAACAGGTGAAGACACTGTACAA
CAGTTTATCCCAAAAGGTAGTGAAAGGTGAATGGGACACCTCAACTTGTC
AATGTTCGCAAATTCACTTCAGAATGGTCATTTTTATTAATGATAaagtt
ttttaaagctttttataaTATTGATTATTGTACCTGGGgttaaatttcag
caaaatgtGATCGTTAGAGAGACAAAAAGTACCCCCtccataggcgtagc
gagatacactgcaaaatttatgagggagtgcagacgtttatgataTATTC
actatcttttgataaaacaaagacaataattacatgtcgtaaaaaccgct
ctcacccataaattttgcagggtatctcgctacgtcTATGCCCTCAGATA
CGTGCTTTCCTAAagctgacccttagagagattatTTTGACACTATGCTA
CTTTTGTAACCCTAGAGAGACGTTGGAAAGGTAACAAACTGACTCAATAG
CTATCTTTGCTTAATACCCAggtattttttattgttttgatattgtttta
atttatttacactacatgttttcaaaaaaactattACTCCCACTAGCAAA
AAGAACTTTGCAATTTCTCACAGTTTTGAATCATAAGCAGAAGTTGCATT
TGTATCATAAGTCTTTTGTACCGAATTTGAGGCTTCTAAagatttcgaat
ctttcgagTGTTTACAACAATTCATTTGATTAGCCAAAATATACAACAAA
GGGTCAGCAATTGCTTTTAGTAGAATGAGAATCATTAAAACTCCATCTAC
ACGTGCTCCACTGTACAATGAAACAGCTTCTCCACCTTTGAAGATCATGA
TCAAAACAGNAAATTTCAGCAAAATGTGATCGTTAGAGAGACAAAAAGTA
CCCCCtccataggcgtagcgagatacactgcaaaatttatgagggagtgc
agacgtttatgataTATTCactatcttttgataaaacaaagacaataatt
acatgtcgtaaaaaccgctctcacccataaattttgcagggtatctcgct
acgtcTATGCCCTCAGATACGTGCTTTCCTAAagctgacccttagagaga
ttatTTTGACACTATGCTACTTTTGTAACCCTAGAGAGACGTTGGAAAGG
TAACAAACTGACTCAATAGCTATCTTTGCTTAATACCCAggtatttttta
ttgttttgatattgttttaatttatttacactacatgttttcaaaaaaac
tattACTCCCACTAGCAAAAAGAACTTTGCAATTTCTCACAGTTTTGAAT
CATAAGCAGAAGTTGCATTTGTATCATAAGTCTTTTGTACCGAATTTGAG
GCTTCTAAagatttcgaatctttcgagTGTTTACAACAATTCATTTGATT
AGCCAAAATATACAACAAAGGGTCAGCAATTGCTTTTAGTAGAATGAGAA
TCATTAAAACTCCATCTACACGTGCTCCACTGTACAATGAAACAGCTTCT
CCACCTTTGAAGATCATGATCAAAACAGGGGGTATGGTGAATAAGATATA
AGCAACCATAATGGTAGACCAGAAGCGTGTAATCTCTTTCTCATAATCAC
GTGATTCAGTTTTTGAACCACCAATCATACCAGCGTTTTGTCCACTCAAC
ACTTTTTTGGTAACACTGATGATGTAGATGCTGGATAGGATGAGGAAGAA
GTCAGTAATGATCATTATGATGGAGATGATTTCCAATGCTCCAGATCTGT
TGATGAATATGGTTAACGTTGGCAATGCACTGATAACCCACACAAACACC
AATGCTAGAACAGTTGATCTCTTTTTGACTTCACGATGTCGGAAGGGAAA
TTTGAGAGCCATGAAGCGTTCCAATGATAATAGAATAACGTGAAGTAACG
AAGCAATCAAACTGAATAAGATGATAAACGCCAGGACTAAGATCTTCTTG
GAAGAGATTGGTTCACCTGCAGCAAAACAAGCGAACTCCACTATCACAGC
CGCCCCTGACGTGAAATTTGTTAAACATAAACTGATAATGATTTGTTTAT
CGGGCGTCATCTTCCGCCCTCTTCTCGATGTCTTTGAGTTTCTTCGTAAC
TTGTAGACCATCGTGAAGATGGCTGTGGTGTTTAAAAACACGATGGTGAA
TCCTTCCAATATGATGAAAATAACGAGTCCTTTGAATGTTGCTTCTCCAT
CTTTGAACGTCATGTTGACTGGAGTGTTTTAAGcgaatttataaaatttg
ataattttcaactCTATAATATTTAAATAGAAATTTACACCATGTTATAA
TAAATTTATAAGTGATGAGACACAcaccaatgaagtaaaagcccaaaggg
ctagaagcgaatctcttAAGAAGGATTTGATACCActaaatcctacctaa
gttgcGTGGCCTTGAGCGGTCCGCGTGGTTTTAATACAATCACcagattg
aaattaaaatttgccgcttgatttcaaaaaatatataactcgaaaacaaa
gaaaccactAAATTCaatacgtcatcaaaaaaaaacgGCGTatatcttaa
ggcttcactttttcttttctgaGAAAAGTTAAAGATTCGCTTCTACCCTN
GATCTCTTTCTCATAATCACGTGATTCAGTTTTTGAACCACCAATCATAC
CAGCGTTTTGTCCACTCAACACTTTCTTGGTAACACTGATGATGTAGATG
CTGGATAGGATGAGGAAGAAGTCAGTAATGATCATTATGATGGAGATGAT
TTCCAATGCTCCAGATCTGTTGATGAATATGGTTAACGTTGGCAATGCAC
TGATAACCCACACAAACACCAATGCTAGAACAGTTGATCTCTTTTTGACT
TCACGATGTCGGAAGGGAAATTTGAGAGCCATGAAGCGTTCCAATGATAA
TAGAATAACGTGAAGTAACGAAGCAATCAAACTGAATAAGATGATAAACG
CCAGGACTAAGATCTTCTTGGAAGAGATTGGTTCACCTGCAGCAAAACAA
GCGAACTCCACTATCACAGCCGCCCCTGACGTGAAATTTGTTAAACATAA
ACTGATAATGATTTGTTTATCGGGCGTCATCTTCCGCCCTCTTCTCGATG
TCTTTGAGTTTCTTCGTAACTTGTAGACCATCGTGAAGATGGCTGTGGTG
TTTAAAAACACGATGGTGAATCCTTCCAATATGATGAAAATAACGAGTCC
TTTGAATGTTGCTTCTCCATCTTTGAACGTCATGTTGACTGGAGTCTTTT
AAGcgaatttataaaatttgataattttcaactCTATAATATTTAAATAG
AAATTTACACCATGTTATAATAAATTTATAAGTGATGAGACACAcaccaa
tgaagtaaaagcccaaagggctagaagcgaatctcttAAGAAGGATTTGA
TACCActaaatcctacctaagttgcGTGGCCTTGAGCGGTCCGCGTGGTT
TTAATACAATCACcagattgaaattaaaatttgccgcttgatttcaaaaa
atatataactcgaaaacaaagaaaccactAAATTCaatacgtcatcaaaa
aaaaacgGCGTatatcttaaggcttcactttttcttttctgaGAAAAGTT
AAAGATTCGCTTCTACCCTTCGGGCTTTCACTTCATTAATACATACCCGA
GAAATCAAGACACAAGTGCCTCTTCGTCTCACTCGTAATGAACGAGAgat
gtattttttaaaaatgagaTTCAAATAAAGTTTCCAAAGCGACTCTCTTC
CTCTTTGGTTTGTTTACCTTTATAAAActtcatcaaaacaaacaacctGA
ACGTCATCAGTCAAAACCACCAGAAAGATTCTTTCAACTTATCACTACCT
CATATCGACTTTATATGGCGATAAAAGTCAACATTGCTCTTTTCCCTCCT
CTTCTCTCGAGTTACGTGATAAAAAGATCTGTGATTTTTGTCGGTTGAGA
AGTTTTCACCTTTCTGTTCGCTGAATGCCCTTTTCATTATCACATACCCA
CGAGTCTTTAATTCCGATTTGTAATATTCAACCACTTGCAATTTTATGAA
TGTCTCTTGTGAATTTATTCAGATTTCTAAatggaatgttttttttcgat
tttttattcagtttatCCAATATAACTTGTTATTCGCTGAAAAATTATAC
TAAAAATATCCAATTTCCATCAAATTAATTCGTTCATTCCTTTATCAAAC
CTGTAATTAAGATATTACAACAAATTATCAAATTATTTATTGCTCCTCCT
TCCTCCATTTAGCAAGCTATGGTAGTACTTCAATCTTCAACTATTTTCGT
AGTATTTTTCATCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004247-exon-sc0000041-1491911889:398714..399031 | TCONS_00004247-exon-sc0000041-1491911889:398714..399031 | Clytia hemisphaerica | exon |
| TCONS_00004247-exon-sc0000041-1510915933:398714..399031 | TCONS_00004247-exon-sc0000041-1510915933:398714..399031 | Clytia hemisphaerica | exon |
| TCONS_00004247-exon-sc0000041-1575043694:398714..399031 | TCONS_00004247-exon-sc0000041-1575043694:398714..399031 | Clytia hemisphaerica | exon |
| TCONS_00004247-exon-sc0000041-1491911889:400852..401534 | TCONS_00004247-exon-sc0000041-1491911889:400852..401534 | Clytia hemisphaerica | exon |
| TCONS_00004247-exon-sc0000041-1510915933:400852..401534 | TCONS_00004247-exon-sc0000041-1510915933:400852..401534 | Clytia hemisphaerica | exon |
| TCONS_00004247-exon-sc0000041-1575043694:400852..401534 | TCONS_00004247-exon-sc0000041-1575043694:400852..401534 | Clytia hemisphaerica | exon |
| TCONS_00004247-exon-sc0000041-1491911889:402623..405329 | TCONS_00004247-exon-sc0000041-1491911889:402623..405329 | Clytia hemisphaerica | exon |
| TCONS_00004247-exon-sc0000041-1510915933:402623..405329 | TCONS_00004247-exon-sc0000041-1510915933:402623..405329 | Clytia hemisphaerica | exon |
| TCONS_00004247-exon-sc0000041-1575043694:402623..405329 | TCONS_00004247-exon-sc0000041-1575043694:402623..405329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:398714..405329 + |
Blast
BLAST of TCONS_00004247 vs. Swiss-Prot (Human)
Match: CHUR (Protein Churchill OS=Homo sapiens GN=CHURC1 PE=1 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 5.593e-34 Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 3
Query: 228 LVMCKECVINPFPNRNKTCLESGSYLINFKGCKECGKRELIKISNKQLKEDDEEENITYIHTCDSCAHVIAEHEYTFSVIDEEQEYSMNCLLCGTGEDTV 527
+ MC +CV +PNR TCLE+GS+L+NF GC C KR+ + I+NK LKE+D EE +TY H C +C HVIA HEYTFS++DE QEY+M CLLCG EDT+
Sbjct: 26 VAMCGDCVEKEYPNRGNTCLENGSFLLNFTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHVIARHEYTFSIMDEFQEYTMLCLLCGKAEDTI 125
The following BLAST results are available for this feature:
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