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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004235 ID=TCONS_00004235|Name=TCONS_00004235|organism=Clytia hemisphaerica|type=transcript|length=2457bpRun BLAST on NCBI transcript from alignment at sc0000041:337131..359657+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004235 ID=TCONS_00004235|Name=TCONS_00004235|organism=Clytia hemisphaerica|type=transcript|length=22527bp|location=Sequence derived from alignment at sc0000041:337131..359657+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004235 vs. Swiss-Prot (Human)
Match: K2026 (Uncharacterized protein KIAA2026 OS=Homo sapiens GN=KIAA2026 PE=2 SV=2) HSP 1 Score: 135.961 bits (341), Expect = 2.124e-32 Identity = 98/355 (27.61%), Postives = 178/355 (50.14%), Query Frame = 3
Query: 231 INHKFNTSTYETITEVAADIRRLLEEIYSYLGTDHYLFRNVLTLEKVMEQKFALLPRTYRDQCSIESTNIVLGKGFINQQ------LYSTRRRGNK------TEGHETPILFQ-MKHXXXXXXXXXXXXXXXXXXXXXXXXXXXYANFEDEMLTGQVLKELRTCWEVPCVGILIYMLQDFFDIRDFNYTEFELGSLYMEKSGLFARILEAIFSTPHQRKRYKEKTLSIKKPPKFEVLFEKLNARITKWYST-ADYQGAEYATEKFGFCRTFFNSIGEDNPLTDVESFAQLRLQQKMTIMKALCESTLHTDETMCQCLANIPILQRQDLYLGQDNEKHSYYFFPQFNTTDVRLFKK 1253
+ KF + Y ITE AD R +LE Y G DH++ + LE ++EQK ALL R R++ +I T+ +G+ + STRRR T G I+ Q ++ E+++ +E+++ +E+E+++ E +KE +E ++L + T WE+P +G + + Q ++ + + E E L + + ++I+ ++ S PH+R TL + + L ++ +WY+ + + EK G C FF +GE NPL + + F +L QK+ ++K LC+ T + + + PI + +++ LG D +++Y FPQF DVR++K+
Sbjct: 142 MEEKFASGQYGGITEFVADFRLMLETCYRLHGVDHWISKQGQKLEMMLEQKLALLSRHLREKTTIAVTS----RGYYGLEDEKGTACTSTRRRSTPRSLAGLTSGVFESIMVQVLRQEEQLRAKEEKRLREQERKEAEEASQKEIEEWERKLLAQAAPTCMETMWEIPAIGHFLCLAQQILNLPEIVFYELERCLLMPQCNAFLSKIMTSLLSPPHRRP-----TLHRRPTLPYRTWEAALRQKVQQWYTAVGQTENPDNCAEKLGLCPQFFKVLGEVNPLEE-KPFHELPFYQKVWLLKGLCDFVYETQKEVQDAVLGQPIHECREVILGYDYLENAYVHFPQFCGADVRIYKQ 486 The following BLAST results are available for this feature:
BLAST of TCONS_00004235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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