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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004226 ID=TCONS_00004226|Name=TCONS_00004226|organism=Clytia hemisphaerica|type=transcript|length=2179bpRun BLAST on NCBI protein sequence of TCONS_00004226-protein >TCONS_00004226-protein ID=TCONS_00004226-protein|Name=TCONS_00004226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp MKETAIQTRDFVEKEMDAGIKRKSEDHPNEDFEKRAKYAYLGKIPNVNDTRun BLAST on NCBI transcript from alignment at sc0000041:217454..225801+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004226 ID=TCONS_00004226|Name=TCONS_00004226|organism=Clytia hemisphaerica|type=transcript|length=8348bp|location=Sequence derived from alignment at sc0000041:217454..225801+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000041:217454..225801+ >TCONS_00004226 ID=TCONS_00004226|Name=TCONS_00004226|organism=Clytia hemisphaerica|type=CDS|length=22464bp|location=Sequence derived from alignment at sc0000041:217454..225801+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004226 vs. Swiss-Prot (Human)
Match: PH4H (Phenylalanine-4-hydroxylase OS=Homo sapiens GN=PAH PE=1 SV=1) HSP 1 Score: 529.635 bits (1363), Expect = 0.000e+0 Identity = 249/423 (58.87%), Postives = 316/423 (74.70%), Query Frame = 3
Query: 381 NVNDTNTPCIVFSLPEEVGVLADALKIFKKRQINLKHIESRPSKSNKKDYEFYVDIDAET--ANSESVKLVVEDLKSKAKSVVL-HNEESVPWFPRKIADLDKFADRVLSYGSELDSEHPGFTDPVYRARRKEFADIAIKYRHGEPLPRVTYTEDEISVWNTVFSELTKLFPKYACREVNFMLPLLVENCNYRIGAIPQLEDVSKFLKDCTGFTLRPVAGLLSSRDFLAGLAFRVFHSTQYIRHAKTPMYTPEPDCVHELIGHVPLFADPSFAQFSQEIGLASLGAPDEWIEKLATLYWFTVEFGLCRQDGEIKAYGAGLLSSFGELQYCVSDKPEHLAFDPEKTSQTKYPITEFQPRYFVAESFEDAKEKVRKWANHIPKPFALHFNPYTQIVETLDRKEQVLKLIEDVRGELDHVSTALSK 1640
N N ++FSL EEVG LA L++F++ +NL HIESRPS+ K +YEF+ +D + A + +K++ D+ + + +++VPWFPR I +LD+FA+++LSYG+ELD++HPGF DPVYRARRK+FADIA YRHG+P+PRV Y E+E W TVF L L+ +AC E N + PLL + C + IPQLEDVS+FL+ CTGF LRPVAGLLSSRDFL GLAFRVFH TQYIRH PMYTPEPD HEL+GHVPLF+D SFAQFSQEIGLASLGAPDE+IEKLAT+YWFTVEFGLC+Q IKAYGAGLLSSFGELQYC+S+KP+ L + EKT+ Y +TEFQP Y+VAESF DAKEKVR +A IP+PF++ ++PYTQ +E LD +Q+ L + + E+ + +AL K
Sbjct: 28 NCNQNGAISLIFSLKEEVGALAKVLRLFEENDVNLTHIESRPSRLKKDEYEFFTHLDKRSLPALTNIIKILRHDIGATVHELSRDKKKDTVPWFPRTIQELDRFANQILSYGAELDADHPGFKDPVYRARRKQFADIAYNYRHGQPIPRVEYMEEEKKTWGTVFKTLKSLYKTHACYEYNHIFPLLEKYCGFHEDNIPQLEDVSQFLQTCTGFRLRPVAGLLSSRDFLGGLAFRVFHCTQYIRHGSKPMYTPEPDICHELLGHVPLFSDRSFAQFSQEIGLASLGAPDEYIEKLATIYWFTVEFGLCKQGDSIKAYGAGLLSSFGELQYCLSEKPKLLPLELEKTAIQNYTVTEFQPLYYVAESFNDAKEKVRNFAATIPRPFSVRYDPYTQRIEVLDNTQQLKILADSINSEIGILCSALQK 450 The following BLAST results are available for this feature:
BLAST of TCONS_00004226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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