TCONS_00004220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004220
Unique NameTCONS_00004220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004220 ID=TCONS_00004220|Name=TCONS_00004220|organism=Clytia hemisphaerica|type=transcript|length=2647bp
taCAGTTATACACTTCGACAAACATTCACTATTGAGAATCCGTCCTTTTT
GATGGACCCAGATGTGAAGATCAAGCCAGATCCGGACGACCAAGCCATGA
ATATGCAAACCATGGAAATCATGAATCGCACCAACTTCAAACAAGCTCTT
GAACGAGAGCGCATCATGGAAGTAGAGCGCAAGGAGCAAATGAAGGGTTC
GCAACTTCCACAACAACAAACTTTCCTCATGAAGCAACAAAACACTACAC
ATTTACAACAAAACAtccaacaacagcaacaacaaccacaacagcaacaa
caacaaccacaacaGCAACAAAGATTCTTTAACAACTCTAACCCTGTCAG
CTTCCAAACACAAAGAACTGtcaataatcaaaacaaaggcATCAAGGCTA
ACATGCCAGCGATGAGTTTACCAAGCAGTGTTTTGAAGGTTGAAACGAAG
CTTCAAAACCCAACCAGCTATTACCTGAAGCAACAACAGAAAAGACAAGT
GCGCGAATATTTGGAGCAGAACAACCAACTCAGCACCAACATGCCTGTCT
CCGTACCCACCGCTCTTCAACAGAACTACAACTTCTCATCCGAGTTCTCC
TCACCAAGCTTCATGAACAGTTTTGGTGGTAATCCAATGTCACCGAACAG
CCCGGATGCCGCAAGTTCCGTCGCTAGCGGTGGAGAGtcCAATGATTTCT
TCGAAGATCTATTTAGCGAAGACCTGAACATTTTTTCGGCAACGctGCCA
ACCAATAACAACTTGCTCGATACCTACGTGAATAATCCTACACAGAAAAA
TGAGGAGAATCAGATTTCGATTTCGTCCTCGTGTCCGGCAAACGTGAAGC
AAGAAGAACCGGACACTTTTTTCAACAAAGAACGCCAAAAGAAAGATAAT
CATAATATGATTGAGCGTCGAAGGAGATACAACATCAATGATCGAATCAA
GGAATTAGGAACATTGGTGCCCAAAATCGACAATGACATGAAACAAAACA
aaggtaccatcttgaaatcaTCTGTGGATTATATTCGCCGTTTGAAGAAA
GATCGTGAACGATTGAGAAACGTAGAACATCGATCACAAAGTCTTgaaga
tataaacaaaaaattgttgCTGAGGGTACAGgaattggAACTCATCCTTC
GTGCTTCGAACATTACAACCACATTACCTGAGCCTGATCTCTCCTCGGCC
GCTTCTCCTCAACTCACACAACTCCTGCTAAACAAACAACTCTCACAGCA
ACAAAACTCTGCACAACCAACGCCACAACAACAAGCGGCCGCTTTCTTAC
ttcacaaacaacaaatctCGACGTCGCTACACGAACTTTTAAAAGCGCCA
CCAGGTACCAGTTCCGAAACTACCGCTATGAGTAGCAGTTCGGTGGATAG
CCCGCGCCGGATGGAAGATGATGACGATTGTGTTATCATGGATGAGTGAG
TGATTGGACGCAGGTTACTATGAAAGGACTTCGACTCGCAATCCAATCGC
AATTAGCTGTTAGATTTACAGTAACAATTGTTGAACCCAGAGCTAAAGTC
ACTTAAATGGGCCTCTTTTGCTAGTAAGAGAAACGAAATTTCCAGGTGAA
AAGTAACGTCATTCACAATGGGATTCTCGAAATGAGTGTACATTACAGAC
CGGCTAAAACGAACTCTATATCTCCGTTCAATGGAGACAAGTGATTTTTG
GGGCTATATTTTTGCATCTCATGTTTTTGCTATTCAATCAAATTAATCga
taaaaaagacattttttgttattGAGGACAGACCAGCCACAGCGCCTGCA
GAAATGGGTCCACGCATTTTCGTTAGTGTAATGTTTATGGAAAGAAGTAA
TTTTAATAGATGTTGATTTTCTGTTTTGCTAATTTTCAGCACTCTGGGAT
GCACTAAACGGTTGAAAGTGTTTTTACGCACACATTATATACATTTCAAA
CCTTTTAATTTTCTGAACTCTCCTTTGGGTGAGAATAAAccaatttattg
ttctacgggcccgaccgaccctgtttatttaatattcgaaaaaaaaaaat
aatttagaatTTGCAAAACTCAAGGTTGGACTTTTGGTTCTTCGTTTTTG
AATGAACAATTGAAAAAGTCTAAATACATAAGGTTGATGGTATttgacaa
ttttatttttactataCCAGCCGTCCGATATTTTTCTGGAGGTTTGCCCG
TAGAACAAATTTGTCTTGCCTTatttaaaaaagagaagaagaagTGATCA
TCATATTAATCATTGTTGCATTCGAAACTGTGTAGAACTTTATGACCGAC
CATGTAAATTTTTCCCTTCCCCTCCTATATTGAGAACAAtgtgtcttttt
tttcttttttttcaaattatatatGCATTATTTCTGGACAAAGATTTTAA
TACTGCTTTTATGAcgtgaaaatggaaaaatattgGATTTTGCAATTATA
TAATTATCTTTCGTACATAATGATAAAAATTAGAATTAAAGTGTTTATTA
GAATTTCTccttaaaaattgtaaaatattcaaatctttcaaCGTGCTCTT
TGTTTTAATGTAAATAGAAGATCAATTTTTTAACccgttttgttgttttt
cttttcttcatggAAATGCTCTGTTTTGGAGAATTGACGCCTCGATG
Run BLAST on NCBI

transcript from alignment at sc0000041:145173..152581+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004220 ID=TCONS_00004220|Name=TCONS_00004220|organism=Clytia hemisphaerica|type=transcript|length=7409bp|location=Sequence derived from alignment at sc0000041:145173..152581+ (Clytia hemisphaerica)
taCAGTTATACACTTCGACAAACATTCACTATGTATGTAAATAAAATGTA
TTTTATCTAGTAGTGGTATGCTTTTTTAAAATTAGAAACATCTAAAATCT
GTGAATTTTGATCAATCCTAATTCCATAGAAAACTATGGGTATCTAGCAT
GGCGCTCGAAATCTATCTAGACATTCATTATCTTACAACTTGTAAACTTG
GGATTTTTCGACTTTTCTTTTGGTTTTCTTCTGTAGTGAGAATCCGTCCT
TTTTGATGGACCCAGATGTGAAGATCAAGCCAGATCCGGACGACCAAGCC
ATGAATATGCAAACCATGGAAATCATGAATCGCACCAACTTCAAACAAGC
TCTTGAACGAGAGCGCATCATGGAAGTAGAGCGCAAGGAGCAAATGAAGG
GTTCGCAACTTCCACAACAACAAACTTTCCTCATGAAGCAACAAAACACT
ACACATTTACAACAAAACAtccaacaacagcaacaacaaccacaacagca
acaacaacaaccacaacaGCAACAAAGATTCTTTAACAACTCTAACCCTG
TCAGCTTCCAAACACAAAGAACTGtcaataatcaaaacaaaggcATCAAG
GCTAACATGCCAGCGATGAGTTTACCAAGCAGTGTTTTGAAGGTAAGATT
TTCATCCCTTTTTCTTATAACAATATGGTTCACATGGTTTTCTTCCACTT
CTTCAACAGATGATGattataataaattttgttCTGTGATCACAATACTG
TGTTGTAAGCTGAACAACTTTCGGTCAAAGGCTGCAGCAGAGGGTCGAAA
AGTTAAATTTGAACCGGCATCCACACAGcatactttcattttcattaagG
ACATGCTTTTTCATTCGCGGAGTTTTCTTTTAATCAATTGTTTTGAACGc
gttcaatgcaatgacttcctGGATCAGGTCACGAAGAGGAAAAGCTTGTA
TCTTAATTCCATAATCTACTGACTATCATACCTTTATTTCATGTAGTGTT
TTACTATAAGAAATTGATAAAAGACTGCCTTTAGTTTTATTGCATGGATG
GAACCTTAGGCTTGCGTTTTTATATGTTCAGAAAAAGGTATTTCCAGTGA
CCTGGTCAGACGTAATAAAAAAACAGCTCTAAGAAAAGAGGAAAACTCTG
TAGGGAATATcaaggaaaatcaaaaaaaactaattaagtcctttttttca
aaaagagagAGTAACTTTTGGCATAATACTTTCAATGCGTGTCACTTGTT
GAAGCATGCCTAGGCTATCTTTGGATCAAATTTTTTCTCCGTTTTGTTTG
TcttgtttttgtataaaagttcactttttttacaaatatttttcgaGTCG
TCTTGCTATATGAGACTTTGTACAGGTAGTCAGGTTTCAAGCTACCTCTG
CACGAACATTTTGTATTGAATCGTTCACACAAGCCACAAAGCATAGTGTA
CAGTAGTTGATTGATCGGAGTTGGTTTGTATACACATCGGAAAACACAAA
TAAAGCACATAGAAAGAAGGACACAAAATTAGCACGCCTGAACAAAGCCA
AGCACCAAAACCGCATTGTTTTGATTGCAAACTTGTCGCGATCATACAAT
TGCTTCATTACGGTTTTTTGATGAAACATACTATACTGCGTGTTAGTACT
AccacaatataataaaaatcattttaaactGATTGTGATCAGAAAGTTTT
ACTAATGGTGCTTTTCATTGTGAAGGTTGAAACGAAGCTTCAAAACCCAA
CCAGCTATTACCTGAAGCAACAACAGAAAAGACAAGTGCGCGAATATTTG
GAGCAGAACAACCAACTCAGCACCAACATGCCTGTCTCCGTACCCACCGC
TCTTCAACAGAACTACAACTTCTCATCCGAGTTCTCCTCACCAAGCTTCA
TGAACAGTTTTGGTGGTAATCCAATGTCACCGAACAGCCCGGATGCCGCA
AGTTCCGTCGCTAGCGGTGGAGAGGTAAgggtttttgattttgtatgtgG
TCTTATTTTTACGTTTTCTACCTAACTTATAATAAGCATCATAaggcttt
ttctaaagaatccTTTATCAATGTTATGTAGACTACTCAAGTGCACTGCT
ACTTTTTATAACATCTCTTGAATTATCTAAAAGCACTTGTTGCATAAGAA
GAATGTCTATGTTTGATAAtttaatctttttaatttcCCTTGAAAGCTTT
TCCAACGAGAAACTGATACTCGTAAATTTAATTATAATTGATTGGATTGT
TAGTCGGTGGAACTTAAGATGATCAATTTATCTTTTAATGTGGCCTAAAT
AATGTGATTTGCATTTGGGTTTCCAAGTCAGTTATAACGTTAAAAATTGC
GAACCTTGTTGAATGTTGCGGTTACATAAAACTTGATTGTTTTTGGGTCg
cctttaaaatgaaagaagcAGAGACCAATTGAGTTTTATATACCATGAAG
AGAGAGGCATTGAAAGAAATTATTTCGTAATTTGAACAATATAAATGTAA
CCTGAGAAGacattttaaaacatttcgtTCATGAACGAAGGAAAGGGGGG
CCGGTTTGCGTTTCTTAATCTGACTTTCAAAACGTTTTAATGGTGAACAC
GcgtctttgaaagatatttaaaGGGAAGGTGTAACCAAGGTGGATCGAGA
TGGTTTTAATGTGCGCTGCTTCTGTACGTCATTAACTTTCCTTAGCGCAT
CTCTTTTGTTTAATTAACGTCATCGTTTGAGCTGGATTAGGGTATCCTTT
CAAACCAACCTCTAGGTCACATTTCTAATTAACTTTTTgttattgtgttt
ttttttagtcCAATGATTTCTTCGAAGATCTATTTAGGTGAGTTTCAGtt
acttaaaatttgaaatttgttcaATGACGGCTTTTATAGGTTATATgctt
tatattatttttaataGGCTTTTGGTTAGCATTGAGATTACTGATCCGAT
AAACCAGTTGTTTTAATGAAATAGCTATCAGTAGTCAACTTCCTAGAAAA
TATTATGATGGACTTGCTCTCTCAACCAATTTTTGAGAGTTTGAATAATG
TGCAATTGTCATTACAGATTTTGAAATCTAACACTTTATGTTCTGTTCAA
TTTGAATATCTCGACCATGTCAAGAGATTGTGTGTATTCATGTTCGCACA
CCCCTCTCTATTTTCGTGTCATCAATTTACATACTGTATCAAATTGACCG
ATTGTTTTTATTCTCTTTTGTTTTTAGCGAAGACCTGAACATTTTTTCGG
CAACGGTAAgccattatttttcaattttcaactaaCAAAGTGTTATCGTA
TAGAACCCAATcagtgtttttaatttttctaaaaaagcgattcattgtgg
gattgtttcggaagtattacaatagaatttcctcgaggaattcctaagaa
atttctattgtcccccccccccgaaacaatcccacaatgcatcgcttttt
ttagaaaaatcaaaaactccaataAGATCTATTATGATGAATTGAACTTT
TTGCCTGAGACTGAAGATTATTCTAACTGAAGTTGATAAGGGAGAAAAGT
AATTTTGTGGTCGCTTTGAATTGGTGCGGCCTCTTCCAATATCTTCCTTG
ATGAAGAGCAGTCTTTTTTTCTACTCTCCCATTCCGTGCAAATAAACGAG
CTTCCTGTTTTCTCAACcacaaacttctttttttttgtcgtgaaaaaaaa
gatttctcgcaactcatttttttctgctttgtttatttttagctGCCAAC
CAATAACAACTTGCTCGATACCTACGTGAATAATCCTACACAGAAAAATG
AGGTGAGGGTCTCtaagagttcttaaaaaaatacaagTCGCATCGCTCAT
AACACACATCTTAGTTTTCACCCCATTAACGGTTATTGGAAGGTTCTTCA
AGGGTGGCCTTAGTATATTTCAATTCATTCAGAAATTAGGATTTTCCCGT
CTCTCCTGTTATACTTGAGTGTTGAAAGGCTGTGACCGATAATTGCGTGT
AGAATTCAACTCATGTCTGATTCTTTTCACGCTAACCTTTCTTGTTAAGC
GTGGGTTTTCATATCATTTGTAAAACTCTTCACTTAGATATGATTAATTA
AAACTACCCGAAAGCTTGAAGCCctaatttagttttttttggaTTAATCC
GAAGGTTCGAGTCATGGTTGTCATAGAATGGTCTGGGGCACACATGAATC
GATACTGCCAATGAAAATGACATTGGGATCTGAAATAGCTTTCATATACA
ATGAATCTTTTCAAATGCCTGTCAAATTCTTTTGTAAACCTtcattaaag
gtttttttacataagtgttctcgtttcatatcagacacatatttcatatc
aggacagggtctccctattgttttattatgctgatataagcaaaaaaatg
tttttctttcccttttcctaatcaatcttgctccacataatgtgtcaatt
caatgtgaaaaaaacttggaaattaaaattgatgagtaagcaaacgatat
cactcttatttaaaaacaaaacctttaaatcgtTTAAAACAATTTAATTC
ACTTCATCACGCCTAAACTACGCCTGACATATGTTTACGGAACAAATAAA
CGAGGTTTTATTTCTACATCCCTCTGATTACTAAGAAGTGTCCTTTGGAA
CATTCCATTCTCAAAAGTTTCAAACCACTCAAACTTGATTTGACATGTTC
ACCTTCTGAGAATTTTCtctttgttgattttgtttACAGGAGAATCAGAT
TTCGATTTCGTCCTCGTGTCCGGCAAACGTGAAGCAAGAAGAACCGGACA
CTTTTTTCAACAAAGAACGCCAAAAGAAAGATAATCATAATATGAGTGAG
TTACCTCTCTGACCTTTTTTCGACGCATTGATATCTTTTTGTGTTTGATG
ATTCGTTGGCTAACAGAATCATTTCTCGAGTCCCCctcccccccagcgga
ccttcaattcacgcaatcacgcaaattttttccccaaattcacgcattca
cgcaatattttttcgcaattcacgcaatttttgttcNgcccccccccccc
agcagaccttcaattcacgcaatcacgcaatttttttccccaaattcacg
cattcacgcaatattttttcgcaatttttgttTTACacaaaagctttcca
attcacgcattcacgtaatttttctttacttttcacgcattcacgcattt
tttctttacttttcacgcattcacgcaagtaaaaaagcccattcatgcat
tcacgcaaaccgctggggccCCCTTTCTCCCCAAGCTAAAGTAAAAgata
ttttcttaatttctgTGCAGTATTCAAAACGTTCTTTTTTCTTGTCTTCA
GTTGAGCGTCGAAGGAGATACAACATCAATGATCGAATCAAGGAATTAGG
AACATTGGTGCCCAAAATCGACAAGTAAGTTGATAACCTCTGTGAAAATT
CTGGTATCTATATTGAAACCATCCAAATATTTCATGCCTTAGGGATCTTG
GCTTTTCAAAAGATGAATATCTCAGATTGGTGTTCTTCTCCCATTGGTCA
ATCTGGCTTAATAGGAAATTTATTTTCACTCTCCAGGCAAATAATTGAAA
ACTCTTCTTCTTTCTAGTGACATGAAACAAAACAaaggtaccatcttgaa
atcaTCTGTGGATTATATTCGCCGTTTGAAGAAAGATCGTGAACGATTGA
GAAACGTAGAACATCGATCACAAAGTCTTgaagatataaacaaaaaattg
ttgCTGAGGGTACAGGTAAGAATAAAAGCCCACCCATCGCTTGTGTCGAA
ATGTGCAAATTTTTGTTGATACTAGGCGCAATTGAATCATCAATCGTATC
AATCTTTTATCTCATACCActtaattgttttgttttttttcaggaattgg
AACTCATCCTTCGTGCTTCGAACATTACAACCACATTACCTGAGCCTGAT
CTCTCCTCGGCCGCTTCTCCTCAACTCACACAACTCCTGCTAAACAAACA
ACTCTCACAGCAACAAAACTCTGCACAACCAACGCCACAACAACAAGCGG
CCGCTTTCTTACttcacaaacaacaaatctCGACGTCGCTACACGAACTT
TTAAAAGCGCCACCAGGTACCAGTTCCGAAACTACCGCTATGAGTAGCAG
TTCGGTGGATAGCCCGCGCCGGATGGAAGATGATGACGATTGTGTTATCA
TGGATGAGTGAGTGATTGGACGCAGGTTACTATGAAAGGACTTCGACTCG
CAATCCAATCGCAATTAGCTGTTAGATTTACAGTAACAATTGTTGAACCC
AGAGCTAAAGTCACTTAAATGGGCCTCTTTTGCTAGTAAGAGAAACGAAA
TTTCCAGGTGAAAAGTAACGTCATTCACAATGGGATTCTCGAAATGAGTG
TACATTACAGACCGGCTAAAACGAACTCTATATCTCCGTTCAATGGAGAC
AAGTGATTTTTGGGGCTATATTTTTGCATCTCATGTTTTTGCTATTCAAT
CAAATTAATCgataaaaaagacattttttgttattGAGGACAGACCAGCC
ACAGCGCCTGCAGAAATGGGTCCACGCATTTTCGTTAGTGTAATGTTTAT
GGAAAGAAGTAATTTTAATAGATGTTGATTTTCTGTTTTGCTAATTTTCA
GCACTCTGGGATGCACTAAACGGTTGAAAGTGTTTTTACGCACACATTAT
ATACATTTCAAACCTTTTAATTTTCTGAACTCTCCTTTGGGTGAGAATAA
Accaatttattgttctacgggcccgaccgaccctgtttatttaatattcg
aaaaaaaaaaataatttagaatTTGCAAAACTCAAGGTTGGACTTTTGGT
TCTTCGTTTTTGAATGAACAATTGAAAAAGTCTAAATACATAAGGTTGAT
GGTATttgacaattttatttttactataCCAGCCGTCCGATATTTTTCTG
GAGGTTTGCCCGTAGAACAAATTTGTCTTGCCTTatttaaaaaagagaag
aagaagTGATCATCATATTAATCATTGTTGCATTCGAAACTGTGTAGAAC
TTTATGACCGACCATGTAAATTTTTCCCTTCCCCTCCTATATTGAGAACA
AtgtgtcttttttttcttttttttcaaattatatatGCATTATTTCTGGA
CAAAGATTTTAATACTGCTTTTATGAcgtgaaaatggaaaaatattgGAT
TTTGCAATTATATAATTATCTTTCGTACATAATGATAAAAATTAGAATTA
AAGTGTTTATTAGAATTTCTccttaaaaattgtaaaatattcaaatcttt
caaCGTGCTCTTTGTTTTAATGTAAATAGAAGATCAATTTTTTAACccgt
tttgttgtttttcttttcttcatggAAATGCTCTGTTTTGGAGAATTGAC
GCCTCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002350XLOC_002350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004220-exon-sc0000041-1491911889:145173..145204TCONS_00004220-exon-sc0000041-1491911889:145173..145204Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1510915933:145173..145204TCONS_00004220-exon-sc0000041-1510915933:145173..145204Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1575043694:145173..145204TCONS_00004220-exon-sc0000041-1575043694:145173..145204Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1491911889:145409..145814TCONS_00004220-exon-sc0000041-1491911889:145409..145814Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1510915933:145409..145814TCONS_00004220-exon-sc0000041-1510915933:145409..145814Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1575043694:145409..145814TCONS_00004220-exon-sc0000041-1575043694:145409..145814Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1491911889:146898..147146TCONS_00004220-exon-sc0000041-1491911889:146898..147146Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1510915933:146898..147146TCONS_00004220-exon-sc0000041-1510915933:146898..147146Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1575043694:146898..147146TCONS_00004220-exon-sc0000041-1575043694:146898..147146Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1491911889:147981..148009TCONS_00004220-exon-sc0000041-1491911889:147981..148009Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1510915933:147981..148009TCONS_00004220-exon-sc0000041-1510915933:147981..148009Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1575043694:147981..148009TCONS_00004220-exon-sc0000041-1575043694:147981..148009Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1491911889:148400..148427TCONS_00004220-exon-sc0000041-1491911889:148400..148427Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1510915933:148400..148427TCONS_00004220-exon-sc0000041-1510915933:148400..148427Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1575043694:148400..148427TCONS_00004220-exon-sc0000041-1575043694:148400..148427Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1491911889:148915..148974TCONS_00004220-exon-sc0000041-1491911889:148915..148974Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1510915933:148915..148974TCONS_00004220-exon-sc0000041-1510915933:148915..148974Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1575043694:148915..148974TCONS_00004220-exon-sc0000041-1575043694:148915..148974Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1491911889:149912..150017TCONS_00004220-exon-sc0000041-1491911889:149912..150017Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1510915933:149912..150017TCONS_00004220-exon-sc0000041-1510915933:149912..150017Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1575043694:149912..150017TCONS_00004220-exon-sc0000041-1575043694:149912..150017Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1491911889:150524..150596TCONS_00004220-exon-sc0000041-1491911889:150524..150596Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1510915933:150524..150596TCONS_00004220-exon-sc0000041-1510915933:150524..150596Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1575043694:150524..150596TCONS_00004220-exon-sc0000041-1575043694:150524..150596Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1491911889:150790..150937TCONS_00004220-exon-sc0000041-1491911889:150790..150937Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1510915933:150790..150937TCONS_00004220-exon-sc0000041-1510915933:150790..150937Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1575043694:150790..150937TCONS_00004220-exon-sc0000041-1575043694:150790..150937Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1491911889:151066..152581TCONS_00004220-exon-sc0000041-1491911889:151066..152581Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1510915933:151066..152581TCONS_00004220-exon-sc0000041-1510915933:151066..152581Clytia hemisphaericaexon
TCONS_00004220-exon-sc0000041-1575043694:151066..152581TCONS_00004220-exon-sc0000041-1575043694:151066..152581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:145173..152581 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.14302e-07	2.53311	0.280477	0.0320402	0.0198073	1.08608e-06	0	1.6639e-06	5.25587	8.68413	2.73292e-06	5.90637	11.3539	12.6458	13.3597	18.0349	10.2935	1.40497	18.2041	10.9988	11.5339	17.0566	2.36719	7.69514	2.25986e-09	0.121152	13.1727	19.7127	0.503597	4.41905
Blast
[Close]
BLAST of TCONS_00004220 vs. Swiss-Prot (Human)
Match: TFE3 (Transcription factor E3 OS=Homo sapiens GN=TFE3 PE=1 SV=4)

HSP 1 Score: 166.392 bits (420), Expect = 3.816e-43
Identity = 108/264 (40.91%), Postives = 157/264 (59.47%), Query Frame = 1 
Query:  406 PAMSLPSSVLKVETKLQNPTSYYLKQQQKRQVREYLEQ--NNQLSTNM--PVSVPTALQQNYNXXXXXXXXXXXXXXGGNPMSPNSPDAASSVASGGES--NDFFEDLFS-------EDLNIFSA---------TLPTNNNLLDTYVNNPTQKNEENQISISSSCPA---NVKQEEPDT---FFNKERQKKDNHNMIERRRRYNINDRIKELGTLVPK-IDNDMKQNKGTILKSSVDYIRRLKKDRERLRNVEHRSQSLEDINK 1110
            P   +P  VLKV+T L+NPT Y+L+Q +++QV++YL      +L++    P   P + Q          +P   ++ G    +PNSP A  ++ S  E   +D  +++ S       E L+             TLP + NLLD Y    +Q      I++S+SCPA   N+K+E  +T      KERQKKDNHN+IERRRR+NINDRIKELGTL+PK  D +M+ NKGTILK+SVDYIR+L+K+++R +++E R +SLE  N+
Sbjct:  168 PPAQVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPASAQ-------PLPAPEAAHTTGPTGSAPNSPMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTTGLQLPSTLPVSGNLLDVYS---SQGVATPAITVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSSDPEMRWNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANR 421
The following BLAST results are available for this feature:
BLAST of TCONS_00004220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TFE33.816e-4340.91Transcription factor E3 OS=Homo sapiens GN=TFE3 PE... [more]
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