Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004214 ID=TCONS_00004214|Name=TCONS_00004214|organism=Clytia hemisphaerica|type=transcript|length=1798bpRun BLAST on NCBI protein sequence of TCONS_00004214-protein >TCONS_00004214-protein ID=TCONS_00004214-protein|Name=TCONS_00004214-protein|organism=Clytia hemisphaerica|type=polypeptide|length=547bp MDDKRSMKEKGKFTIDELVLCYEPDPMKAKVLYDAKVLDIDLTKDDKGKKRun BLAST on NCBI transcript from alignment at sc0000041:118823..137445+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004214 ID=TCONS_00004214|Name=TCONS_00004214|organism=Clytia hemisphaerica|type=transcript|length=18623bp|location=Sequence derived from alignment at sc0000041:118823..137445+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000041:118823..137445+ >TCONS_00004214 ID=TCONS_00004214|Name=TCONS_00004214|organism=Clytia hemisphaerica|type=CDS|length=18084bp|location=Sequence derived from alignment at sc0000041:118823..137445+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00004214 vs. Swiss-Prot (Human)
Match: MS3L1 (Male-specific lethal 3 homolog OS=Homo sapiens GN=MSL3 PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 8.103e-34 Identity = 81/209 (38.76%), Postives = 125/209 (59.81%), Query Frame = 1 Query: 73 KGKFTIDELVLCYEPDPMKAKVLYDAKVLDIDLTKDDKGKKVNEYYIHFQGWNKSWDRWILEDKILKDNEASRGMQSXXXXXXXXXXXXXXXXXX-----GENS---NDPSEEKEESDKQT------------------------TEVEEEIKV-----IQLPPVSLDIPKVLANKLEDDCYNIKRKKKLIHLPRIPSVATILSDYYEY 588 K KF E VLC+EPDP KA+VLYDAK++D+ + KD+KG+K+ EY IHF GWN+SWDRW ED +L+D + +R +Q KL ++A+ + + K G +S P+EEK+E+D+ + TEV+EE ++ ++ ++++IP+VL +LEDDCY I R+K+L+ LP ++ TIL Y ++ Sbjct: 8 KFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLARKAVARLRSTGRKKKRCRLPGVDSVLKGLPTEEKDENDENSLSSSSDCSENKDEEISEESDIEEKTEVKEEPELQTRREMEERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKH 216 The following BLAST results are available for this feature:
BLAST of TCONS_00004214 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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