TCONS_00004196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004196
Unique NameTCONS_00004196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004196 ID=TCONS_00004196|Name=TCONS_00004196|organism=Clytia hemisphaerica|type=transcript|length=708bp
ttttcgttGAACCACGTCAACAATGGTTAATTCTTTCTTCAGCACACTTC
AGATAGCTTTCTGCATAATCAAAACCACAACCGCAATCCATGCGGAAAGA
ATAAAGATCCGATCCAAGCTCATCATGTTCAATATCCTTTTCCTTTCAAT
ACAACACACATTTGGGCAATAACTTTACAGTCGGGTTTCTTACAAACCCT
TTTAATAGGTACAGGCCAATGGCTGCATTGTTCTTCTTCATATAAAAAGC
ATGAAGATCTTTTGAAACTTTCCGCAGTCCAGTGTGAAAGATTGAAGAAC
ATTATGGGTCTTTTTAAATTCACATGGAtgtttacaatttttgaaaaaat
agtagTGAAGAATAAGTCGAGTAGTAACCTCTAAAGGATAGCTTGCAAAT
ACTAAGGGCGCTTTACCATTATTTCTATAAACTGATTTTCTGTATTAAGG
ATATATTATTGAAAAAACATTCTACAAACAGAAATTAGCTTTTTAAAGGA
CATAGCTCAAACctttcaaaaaacaaataatattgGATGAATGATAGTCA
ATATTATGTTTCCAGTTCTGTTATTaaactttaatgggattaatttgcta
ttaaagatattcttttttatgGTATAGCAGGATAAAATAAAGGCGACGCC
CctcttatgctgacaaagcaaaattaataacaaaagaatttccaaaATTG
GTGCTTGG
Run BLAST on NCBI

transcript from alignment at sc0000039:775950..776657

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004196 ID=TCONS_00004196|Name=TCONS_00004196|organism=Clytia hemisphaerica|type=transcript|length=708bp|location=Sequence derived from alignment at sc0000039:775950..776657 (Clytia hemisphaerica)
CCAAGCACCAATtttggaaattcttttgttattaattttgctttgtcagc
ataagagGGGCGTCGCCTTTATTTTATCCTGCTATACcataaaaaagaat
atctttaatagcaaattaatcccattaaagtttAATAACAGAACTGGAAA
CATAATATTGACTATCATTCATCcaatattatttgttttttgaaagGTTT
GAGCTATGTCCTTTAAAAAGCTAATTTCTGTTTGTAGAATGTTTTTTCAA
TAATATATCCTTAATACAGAAAATCAGTTTATAGAAATAATGGTAAAGCG
CCCTTAGTATTTGCAAGCTATCCTTTAGAGGTTACTACTCGACTTATTCT
TCActactattttttcaaaaattgtaaacaTCCATGTGAATTTAAAAAGA
CCCATAATGTTCTTCAATCTTTCACACTGGACTGCGGAAAGTTTCAAAAG
ATCTTCATGCTTTTTATATGAAGAAGAACAATGCAGCCATTGGCCTGTAC
CTATTAAAAGGGTTTGTAAGAAACCCGACTGTAAAGTTATTGCCCAAATG
TGTGTTGTATTGAAAGGAAAAGGATATTGAACATGATGAGCTTGGATCGG
ATCTTTATTCTTTCCGCATGGATTGCGGTTGTGGTTTTGATTATGCAGAA
AGCTATCTGAAGTGTGCTGAAGAAAGAATTAACCATTGTTGACGTGGTTC
aacgaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002344XLOC_002344Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004196-exon-sc0000039-1491911889:775950..776657TCONS_00004196-exon-sc0000039-1491911889:775950..776657Clytia hemisphaericaexon
TCONS_00004196-exon-sc0000039-1510915933:775950..776657TCONS_00004196-exon-sc0000039-1510915933:775950..776657Clytia hemisphaericaexon
TCONS_00004196-exon-sc0000039-1575043694:775950..776657TCONS_00004196-exon-sc0000039-1575043694:775950..776657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:775950..776657 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06647	1.38663	0.644003	0.157514	0.575275	0.30306	0.822666	0.427872	0.359476	0.222634	0.288126	0.757611	0.472848	0.540163	0.565203	0.216625	0.213491	0.437643	0.226735	0.316349	0.137483	0	0.0815192	0.444677	0.458007	1.0219	0.194978	0.312129	0	0.160799
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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