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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004186 ID=TCONS_00004186|Name=TCONS_00004186|organism=Clytia hemisphaerica|type=transcript|length=930bp
ACTAAAGATGATTTCCTTTCTGCCCCAGAAGATGGAGGGGCGTTTTGAAC
GTAAACTTGAATATCAGGGCGTGATAAAGGGCGGATATCAATGAGCGAGC
GATCGAAACTTTGCGGGGGTGTTGCATACGGTGTTCCGTAGCCGTGTTCC
ATGCTTCGTGAAAATAACCCACTTGTACTTCCGCCCAGTTTACCATTGCT
TTGTTTAGTGGGCGTACAAGTGGCGCTTCGACTTCCGCCCATCCGAAGAG
GCGTTTTATTGTTGTCATGGCGATGAACACGGCGCGCCGAATCATCGGAG
TGTCTTCGAGAGAAGCGAGCATATTTATCGATGTGTAGGGAAGATGatgt
tttcacattttggtgCTTTCTGTGATGTTTTGGGTGGGTTGTATGGATGT
TGACTGTTTTAGGTTTGATATTTATGAGGTGTACAGAGGGCCTTCTCTCG
TGGTGCACCACATAATTCTTGCTCACGCAATTCTGCACAGTCTCCAGACA
ACGGGAACTATTTTTAGAATCTGTGCTCGCATTCAGGTGGCGAAAGCGTG
GATCTTTGATTGATTGTAAATTGTGGATGGGTGAGGTGCGAAGAGAGAAA
GAAGAGTGCGGGGTATCTTGGCTAGTTGAGTATGAGGGATTGGAACTAGC
GATTGAGAgggattttctcgagttctctTGATAGCCGATAGTAAATTGTT
CTTGGTATCCGCGTGATCGATTTGGACCAGACATAACTGCAGGTTGTTTT
AACTGGTTATTCGAAGCGTACTGTAGGCGCTCGCGCTGTAGATATTTCGC
ATCGAAAATATTGTCAGGGATGAGTTTGTTTTGTTGACGTATACGTTGGT
TGAATTTATACGACTTCCCTTTTCTACGAAACATCCAAcacgaaaatgaa
aatttcggctCAAGCTGTCCTTGGTAATTA Run BLAST on NCBI protein sequence of TCONS_00004186-protein >TCONS_00004186-protein ID=TCONS_00004186-protein|Name=TCONS_00004186-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
NYQGQLEPKFSFSCWMFRRKGKSYKFNQRIRQQNKLIPDNIFDAKYLQRE
RLQYASNNQLKQPAVMSGPNRSRGYQEQFTIGYQENSRKSLSIASSNPSY
STSQDTPHSSFSLRTSPIHNLQSIKDPRFRHLNASTDSKNSSRCLETVQN
CVSKNYVVHHERRPSVHLINIKPKTVNIHTTHPKHHRKHQNVKTSSSLHI
DKYARFSRRHSDDSARRVHRHDNNKTPLRMGGSRSATCTPTKQSNGKLGG
STSGLFSRSMEHGYGTPYATPPQSFDRSLIDIRPLSRPDIQVYVQNAPPS
SGAERKSSL Run BLAST on NCBI transcript from alignment at sc0000039:587131..588060 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004186 ID=TCONS_00004186|Name=TCONS_00004186|organism=Clytia hemisphaerica|type=transcript|length=930bp|location=Sequence derived from alignment at sc0000039:587131..588060 (Clytia hemisphaerica)
TAATTACCAAGGACAGCTTGagccgaaattttcattttcgtgTTGGATGT
TTCGTAGAAAAGGGAAGTCGTATAAATTCAACCAACGTATACGTCAACAA
AACAAACTCATCCCTGACAATATTTTCGATGCGAAATATCTACAGCGCGA
GCGCCTACAGTACGCTTCGAATAACCAGTTAAAACAACCTGCAGTTATGT
CTGGTCCAAATCGATCACGCGGATACCAAGAACAATTTACTATCGGCTAT
CAagagaactcgagaaaatcccTCTCAATCGCTAGTTCCAATCCCTCATA
CTCAACTAGCCAAGATACCCCGCACTCTTCTTTCTCTCTTCGCACCTCAC
CCATCCACAATTTACAATCAATCAAAGATCCACGCTTTCGCCACCTGAAT
GCGAGCACAGATTCTAAAAATAGTTCCCGTTGTCTGGAGACTGTGCAGAA
TTGCGTGAGCAAGAATTATGTGGTGCACCACGAGAGAAGGCCCTCTGTAC
ACCTCATAAATATCAAACCTAAAACAGTCAACATCCATACAACCCACCCA
AAACATCACAGAAAGcaccaaaatgtgaaaacatCATCTTCCCTACACAT
CGATAAATATGCTCGCTTCTCTCGAAGACACTCCGATGATTCGGCGCGCC
GTGTTCATCGCCATGACAACAATAAAACGCCTCTTCGGATGGGCGGAAGT
CGAAGCGCCACTTGTACGCCCACTAAACAAAGCAATGGTAAACTGGGCGG
AAGTACAAGTGGGTTATTTTCACGAAGCATGGAACACGGCTACGGAACAC
CGTATGCAACACCCCCGCAAAGTTTCGATCGCTCGCTCATTGATATCCGC
CCTTTATCACGCCCTGATATTCAAGTTTACGTTCAAAACGCCCCTCCATC
TTCTGGGGCAGAAAGGAAATCATCTTTAGT Coding sequence (CDS) from alignment at sc0000039:587131..588060 >TCONS_00004186 ID=TCONS_00004186|Name=TCONS_00004186|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at sc0000039:587131..588060 (Clytia hemisphaerica)
AATTACCAAGGACAGCTTGagccgaaattttcattttcgtgTTGGATGTT
TCGTAGAAAAGGGAAGTCGTATAAATTCAACCAACGTATACGTCAACAAA
ACAAACTCATCCCTGACAATATTTTCGATGCGAAATATCTACAGCGCGAG
CGCCTACAGTACGCTTCGAATAACCAGTTAAAACAACCTGCAGTTATGTC
TGGTCCAAATCGATCACGCGGATACCAAGAACAATTTACTATCGGCTATC
AagagaactcgagaaaatcccTCTCAATCGCTAGTTCCAATCCCTCATAC
TCAACTAGCCAAGATACCCCGCACTCTTCTTTCTCTCTTCGCACCTCACC
CATCCACAATTTACAATCAATCAAAGATCCACGCTTTCGCCACCTGAATG
CGAGCACAGATTCTAAAAATAGTTCCCGTTGTCTGGAGACTGTGCAGAAT
TGCGTGAGCAAGAATTATGTGGTGCACCACGAGAGAAGGCCCTCTGTACA
CCTCATAAATATCAAACCTAAAACAGTCAACATCCATACAACCCACCCAA
AACATCACAGAAAGcaccaaaatgtgaaaacatCATCTTCCCTACACATC
GATAAATATGCTCGCTTCTCTCGAAGACACTCCGATGATTCGGCGCGCCG
TGTTCATCGCCATGACAACAATAAAACGCCTCTTCGGATGGGCGGAAGTC
GAAGCGCCACTTGTACGCCCACTAAACAAAGCAATGGTAAACTGGGCGGA
AGTACAAGTGGGTTATTTTCACGAAGCATGGAACACGGCTACGGAACACC
GTATGCAACACCCCCGCAAAGTTTCGATCGCTCGCTCATTGATATCCGCC
CTTTATCACGCCCTGATATTCAAGTTTACGTTCAAAACGCCCCTCCATCT
TCTGGGGCAGAAAGGAAATCATCTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004186-exon-sc0000039-1491911889:587131..588060 | TCONS_00004186-exon-sc0000039-1491911889:587131..588060 | Clytia hemisphaerica | exon |
| TCONS_00004186-exon-sc0000039-1510915933:587131..588060 | TCONS_00004186-exon-sc0000039-1510915933:587131..588060 | Clytia hemisphaerica | exon |
| TCONS_00004186-exon-sc0000039-1575043694:587131..588060 | TCONS_00004186-exon-sc0000039-1575043694:587131..588060 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:587131..588060 . |
Blast
The following BLAST results are available for this feature:
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