TCONS_00004185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004185
Unique NameTCONS_00004185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004185 ID=TCONS_00004185|Name=TCONS_00004185|organism=Clytia hemisphaerica|type=transcript|length=565bp
CGGGTGGGTTGTATGGATGTTGACCGTTTTAGGTTTGATATTTATGAGGT
GTACAGAGGGCCTTCTCTCGTGGTGCACCACATAATTCTTGCTCACGCAA
TTCTGCACAGTCTCCAGACAACGGGAACTATTTTTAGAATCTGTGCTCGC
ATTCAGGTGGCGAAAGCGTGGATCTTTGATTGATTGTAAATTGTGGATGG
GTGAGGTGCGAAGAGAGAAAGAAGAGTGCGGGGTATCTTGGCTAGTTGAG
TATGAGGGATTGGAACTCGCGATTGAGAgggattttctcgagttctctTG
ATAGCCGATAGTAAATTGTTCTTGGTATCCGCGTGATCGATTTGGACCAG
ACATAACTGCAGGTTGTTTTAACTGGTTATTCGAAGCGTACTGTAGGCGC
TCGCGCTGTAGATATTTCGCATCGAAAATATTGTCAGGGATGAGTTTGTT
TTGTTGACGTATACGTTGGTTGAATTTATACGACTTCCCTTTTCTACGAA
ACATCCAAcacgaaaatgaaaatttcggctCAAGCTGTCCTTGGTAATTA
GTCATGTGATTTGTG
Run BLAST on NCBI

protein sequence of TCONS_00004185-protein

>TCONS_00004185-protein ID=TCONS_00004185-protein|Name=TCONS_00004185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
TNHMTNYQGQLEPKFSFSCWMFRRKGKSYKFNQRIRQQNKLIPDNIFDAK
YLQRERLQYASNNQLKQPAVMSGPNRSRGYQEQFTIGYQENSRKSLSIAS
SNPSYSTSQDTPHSSFSLRTSPIHNLQSIKDPRFRHLNASTDSKNSSRCL
ETVQNCVSKNYVVHHERRPSVHLINIKPKTVNIHTTHP
Run BLAST on NCBI

transcript from alignment at sc0000039:585140..585704

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004185 ID=TCONS_00004185|Name=TCONS_00004185|organism=Clytia hemisphaerica|type=transcript|length=565bp|location=Sequence derived from alignment at sc0000039:585140..585704 (Clytia hemisphaerica)
CACAAATCACATGACTAATTACCAAGGACAGCTTGagccgaaattttcat
tttcgtgTTGGATGTTTCGTAGAAAAGGGAAGTCGTATAAATTCAACCAA
CGTATACGTCAACAAAACAAACTCATCCCTGACAATATTTTCGATGCGAA
ATATCTACAGCGCGAGCGCCTACAGTACGCTTCGAATAACCAGTTAAAAC
AACCTGCAGTTATGTCTGGTCCAAATCGATCACGCGGATACCAAGAACAA
TTTACTATCGGCTATCAagagaactcgagaaaatcccTCTCAATCGCGAG
TTCCAATCCCTCATACTCAACTAGCCAAGATACCCCGCACTCTTCTTTCT
CTCTTCGCACCTCACCCATCCACAATTTACAATCAATCAAAGATCCACGC
TTTCGCCACCTGAATGCGAGCACAGATTCTAAAAATAGTTCCCGTTGTCT
GGAGACTGTGCAGAATTGCGTGAGCAAGAATTATGTGGTGCACCACGAGA
GAAGGCCCTCTGTACACCTCATAAATATCAAACCTAAAACGGTCAACATC
CATACAACCCACCCG

Coding sequence (CDS) from alignment at sc0000039:585140..585704

>TCONS_00004185 ID=TCONS_00004185|Name=TCONS_00004185|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0000039:585140..585704 (Clytia hemisphaerica)
ACAAATCACATGACTAATTACCAAGGACAGCTTGagccgaaattttcatt
ttcgtgTTGGATGTTTCGTAGAAAAGGGAAGTCGTATAAATTCAACCAAC
GTATACGTCAACAAAACAAACTCATCCCTGACAATATTTTCGATGCGAAA
TATCTACAGCGCGAGCGCCTACAGTACGCTTCGAATAACCAGTTAAAACA
ACCTGCAGTTATGTCTGGTCCAAATCGATCACGCGGATACCAAGAACAAT
TTACTATCGGCTATCAagagaactcgagaaaatcccTCTCAATCGCGAGT
TCCAATCCCTCATACTCAACTAGCCAAGATACCCCGCACTCTTCTTTCTC
TCTTCGCACCTCACCCATCCACAATTTACAATCAATCAAAGATCCACGCT
TTCGCCACCTGAATGCGAGCACAGATTCTAAAAATAGTTCCCGTTGTCTG
GAGACTGTGCAGAATTGCGTGAGCAAGAATTATGTGGTGCACCACGAGAG
AAGGCCCTCTGTACACCTCATAAATATCAAACCTAAAACGGTCAACATCC
ATACAACCCACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002333XLOC_002333Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004185-exon-sc0000039-1491911889:585140..585704TCONS_00004185-exon-sc0000039-1491911889:585140..585704Clytia hemisphaericaexon
TCONS_00004185-exon-sc0000039-1510915933:585140..585704TCONS_00004185-exon-sc0000039-1510915933:585140..585704Clytia hemisphaericaexon
TCONS_00004185-exon-sc0000039-1575043694:585140..585704TCONS_00004185-exon-sc0000039-1575043694:585140..585704Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004185-proteinTCONS_00004185-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:585140..585704 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.115837	0	0	0.131283	0.479794	0	0.317193	0	0.479324	0.179264	0.0016972	0	0.0622253	0	0.65818	0	0.00273343	0	0	0.00845243	0.212889	0.153026	0.386067	0.23714	0	0.113338	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top