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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004174 ID=TCONS_00004174|Name=TCONS_00004174|organism=Clytia hemisphaerica|type=transcript|length=1253bp
gtattcacgcgccgaaaaagtccaattcacgtattcacgacagaaaaaag
ggtcattcacgtgtcacgccagcccctgggggagccccatAGAAGTCGTC
CATAGGATCAAGACTACCCCAACTATGCTGAACATCATTGGCATTTGTCC
CTCGATCAATATTTCAAACACAAACGCAAAAATGACTTCTGAGTTGCGAA
CAAGCGCAACAGGACCTGCATTTTCTTTCAGTAATGCGTAAGCCAATAAC
ATCATCCCGATAAAATAGAAAAACCCACTGCATATCATTAACACCCAATA
TAAAGGATCCAAGTCGTGGAAAAGCACTATATCGTGGTGTTCAGCAATCA
TAAATAACGGTGAAAATATAACCCCATAAAGACTAGGATAAAGTAATGCT
ACTTTATAGTCCACAGATTTGGTGTTGATTTTTAATATAATCATGTGGAA
AGCTAAAGCAACAGCCGCACACAGACCAAAACCAACGCTCTTCATTTTGT
TGCTGTCTATAATGACTGAATGCGAATGAATGGATGTGATGTTATGCTTT
GGTAGTAAAGCATGTTTCGAATGATAATGTGATGATTGTGTATGTTGGTG
TGATTTTCCTGGTGAAGGGAAGAACATTCCAGGGGCTGCTATGATCACAA
CTCCCACAAAACTGAACAATCCAAGGATAATGTTACACAAACTGCACGAT
TCTTTCAGAAATAAAATACTGAGGAAGATTGTAAACACGGGAGCGGTGAA
TAGAATAACTGTTGCATCACCTAAAGGAAGACCGCTTAGTGATCCATAAA
AGAAAACAATGCTACATATTTTGGCGAATCCCATGAGCCATAACAGTCCG
AAATTCGGCCATGATCCTCCCCAAGGGTTAATGCGTTTCCATGCCAACAA
TACAACGATCAGCAAAAGCTGTACGCATGATCGGACgaaaatgatttgaa
attcAGACAAATCAAGATACGGATTTTTACGATAGATGTATTGGACGAAG
CAATTACCGAGAGCGTAAAAGACGCCCGCGGATGCACCGCAAATTAAGCC
AATTAAATgatctttgacattttctcgcCATCTTCTACGGctgaccatat
tttgaaaaattatctgTTCTGAAGAGTGAAGGCTAAAGGTTagaatttta
tctttttatttccATCAAGCAAACAAAATGAAGTACGGTGGGcgaatgaa
agaaattttaaatgcAAAATGTTGAAACATCTGAAATCTGAgcaaataga
aat Run BLAST on NCBI protein sequence of TCONS_00004174-protein >TCONS_00004174-protein ID=TCONS_00004174-protein|Name=TCONS_00004174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MVSRRRWRENVKDHLIGLICGASAGVFYALGNCFVQYIYRKNPYLDLSEF
QIIFVRSCVQLLLIVVLLAWKRINPWGGSWPNFGLLWLMGFAKICSIVFF
YGSLSGLPLGDATVILFTAPVFTIFLSILFLKESCSLCNIILGLFSFVGV
VIIAAPGMFFPSPGKSHQHTQSSHYHSKHALLPKHNITSIHSHSVIIDSN
KMKSVGFGLCAAVALAFHMIILKINTKSVDYKVALLYPSLYGVIFSPLFM
IAEHHDIVLFHDLDPLYWVLMICSGFFYFIGMMLLAYALLKENAGPVALV
RNSEVIFAFVFEILIEGQMPMMFSIVGVVLILWTTSMGLPQGLA Run BLAST on NCBI transcript from alignment at sc0000039:332798..334050 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004174 ID=TCONS_00004174|Name=TCONS_00004174|organism=Clytia hemisphaerica|type=transcript|length=1253bp|location=Sequence derived from alignment at sc0000039:332798..334050 (Clytia hemisphaerica)
atttctatttgcTCAGATTTCAGATGTTTCAACATTTTgcatttaaaatt
tctttcattcgCCCACCGTACTTCATTTTGTTTGCTTGATggaaataaaa
agataaaattctAACCTTTAGCCTTCACTCTTCAGAAcagataatttttc
aaaatatggtcagCCGTAGAAGATGgcgagaaaatgtcaaagatcATTTA
ATTGGCTTAATTTGCGGTGCATCCGCGGGCGTCTTTTACGCTCTCGGTAA
TTGCTTCGTCCAATACATCTATCGTAAAAATCCGTATCTTGATTTGTCTg
aatttcaaatcattttcGTCCGATCATGCGTACAGCTTTTGCTGATCGTT
GTATTGTTGGCATGGAAACGCATTAACCCTTGGGGAGGATCATGGCCGAA
TTTCGGACTGTTATGGCTCATGGGATTCGCCAAAATATGTAGCATTGTTT
TCTTTTATGGATCACTAAGCGGTCTTCCTTTAGGTGATGCAACAGTTATT
CTATTCACCGCTCCCGTGTTTACAATCTTCCTCAGTATTTTATTTCTGAA
AGAATCGTGCAGTTTGTGTAACATTATCCTTGGATTGTTCAGTTTTGTGG
GAGTTGTGATCATAGCAGCCCCTGGAATGTTCTTCCCTTCACCAGGAAAA
TCACACCAACATACACAATCATCACATTATCATTCGAAACATGCTTTACT
ACCAAAGCATAACATCACATCCATTCATTCGCATTCAGTCATTATAGACA
GCAACAAAATGAAGAGCGTTGGTTTTGGTCTGTGTGCGGCTGTTGCTTTA
GCTTTCCACATGATTATATTAAAAATCAACACCAAATCTGTGGACTATAA
AGTAGCATTACTTTATCCTAGTCTTTATGGGGTTATATTTTCACCGTTAT
TTATGATTGCTGAACACCACGATATAGTGCTTTTCCACGACTTGGATCCT
TTATATTGGGTGTTAATGATATGCAGTGGGTTTTTCTATTTTATCGGGAT
GATGTTATTGGCTTACGCATTACTGAAAGAAAATGCAGGTCCTGTTGCGC
TTGTTCGCAACTCAGAAGTCATTTTTGCGTTTGTGTTTGAAATATTGATC
GAGGGACAAATGCCAATGATGTTCAGCATAGTTGGGGTAGTCTTGATCCT
ATGGACGACTTCTatggggctcccccaggggctggcgtgacacgtgaatg
acccttttttctgtcgtgaatacgtgaattggactttttcggcgcgtgaa
tac Coding sequence (CDS) from alignment at sc0000039:332798..334050 >TCONS_00004174 ID=TCONS_00004174|Name=TCONS_00004174|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at sc0000039:332798..334050 (Clytia hemisphaerica)
atggtcagCCGTAGAAGATGgcgagaaaatgtcaaagatcATTTAATTGG
CTTAATTTGCGGTGCATCCGCGGGCGTCTTTTACGCTCTCGGTAATTGCT
TCGTCCAATACATCTATCGTAAAAATCCGTATCTTGATTTGTCTgaattt
caaatcattttcGTCCGATCATGCGTACAGCTTTTGCTGATCGTTGTATT
GTTGGCATGGAAACGCATTAACCCTTGGGGAGGATCATGGCCGAATTTCG
GACTGTTATGGCTCATGGGATTCGCCAAAATATGTAGCATTGTTTTCTTT
TATGGATCACTAAGCGGTCTTCCTTTAGGTGATGCAACAGTTATTCTATT
CACCGCTCCCGTGTTTACAATCTTCCTCAGTATTTTATTTCTGAAAGAAT
CGTGCAGTTTGTGTAACATTATCCTTGGATTGTTCAGTTTTGTGGGAGTT
GTGATCATAGCAGCCCCTGGAATGTTCTTCCCTTCACCAGGAAAATCACA
CCAACATACACAATCATCACATTATCATTCGAAACATGCTTTACTACCAA
AGCATAACATCACATCCATTCATTCGCATTCAGTCATTATAGACAGCAAC
AAAATGAAGAGCGTTGGTTTTGGTCTGTGTGCGGCTGTTGCTTTAGCTTT
CCACATGATTATATTAAAAATCAACACCAAATCTGTGGACTATAAAGTAG
CATTACTTTATCCTAGTCTTTATGGGGTTATATTTTCACCGTTATTTATG
ATTGCTGAACACCACGATATAGTGCTTTTCCACGACTTGGATCCTTTATA
TTGGGTGTTAATGATATGCAGTGGGTTTTTCTATTTTATCGGGATGATGT
TATTGGCTTACGCATTACTGAAAGAAAATGCAGGTCCTGTTGCGCTTGTT
CGCAACTCAGAAGTCATTTTTGCGTTTGTGTTTGAAATATTGATCGAGGG
ACAAATGCCAATGATGTTCAGCATAGTTGGGGTAGTCTTGATCCTATGGA
CGACTTCTatggggctcccccaggggctggcgtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004174-exon-sc0000039-1491911889:332798..334050 | TCONS_00004174-exon-sc0000039-1491911889:332798..334050 | Clytia hemisphaerica | exon |
| TCONS_00004174-exon-sc0000039-1510915933:332798..334050 | TCONS_00004174-exon-sc0000039-1510915933:332798..334050 | Clytia hemisphaerica | exon |
| TCONS_00004174-exon-sc0000039-1575043694:332798..334050 | TCONS_00004174-exon-sc0000039-1575043694:332798..334050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:332798..334050 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000620 | EamA_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
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