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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004167 ID=TCONS_00004167|Name=TCONS_00004167|organism=Clytia hemisphaerica|type=transcript|length=1340bp
CTTCAAGCTCAACAAGCAACCATTAAACAACtacagttttaaaaaaattg
aaaaacattttctcatcCGTCAAACTATGTCTCTCAGCGCAAAAGACGAT
ATGCGATGCACATTGGTTGCAGACAAATTACGCCGAATCGGGGATGATAT
GAACAAAAAGATAATGGCGAGTGGATTTTCAGGTGGCTTTTCATCCGGTA
AAAAACTCTCATCAAGCAGCGGTGGTTACGGTAAATCCCTTAGTGGAATC
AACAAATCCATGAACAAGGGAAAATCGACATCTGTACTCAACTCTCGAAA
AGGAACAAGTTTATAACATCTTAACAATTGTTGTTGAAGAAGGTTTTGGT
GGAGGGAGGTATTGTGATGAAGATGAGTAGATTATTTGGACCACAAATAA
AGTGGAAAGAGCCCATTAAAACATTTGATAGAAATTCTCGCAAAGCAAAG
CCCTAATAATTCGTCCGATGATAATACACCGAATTCAAATTTGTACATCA
TGGTACATTGAACATTTTATCgtttaagataatgtttttgaaacaCTGAA
AGATTCACAAGAAACAACAACGCAACGATGCGGTGTTGGTTATACTGGGT
GACGGTCGGTGttgttgaaaaatgattaattttaattattttaaaatatg
tAAATATTGTTGCAAAAATTGTACatattttattgtaaaaaatatttttt
tatcaaaaaaatcaaactattTTGATATGTAAATATTATATTCAAGTCCT
GAGAGTTAATTATTTTGGGGCTTGAAATAAATTATTAGGAATTGTACATA
TCCGAAAAATTTAGATGTGTCATAATTTTAGGAGGTAGttatatcatttt
tttcattattttgaaaataacataaaaaaaatcacaaaaataaaaatctt
atttCGCTTGTTTATTATTGTTCTAAAGACCTGAATGACAAACATAAGCC
GCAAGAAAGAACTAGTATACTTcctaaacttttttgtttcttcaaaTATA
GCACTCACGAAATAGCACGTAAAACCTCTTATTATGATTTATAACAGTAA
ATCCTTTTGGCTATGACTTGtaatatgctgacgtcatcaaagttggATGC
AGTTTGAGATGACGAACCTCGTGATATATGTTTATCGAATCTGTAACAAT
AGATACAGAAACAAATTAATCGGATATTTTACTAGTACTAAAGTAAAAGG
ATATACACCTTTAGAATTCGAGGTATTCCTTCACAAGGATAGTTTACAAT
CCTTGTTTACTAGTTATTTATTTACATAAGAAAAACTTGAGACGCTTATG
CAGAACATCGATTTCATAAACAACGACTTCTTTATCCTTA Run BLAST on NCBI protein sequence of TCONS_00004167-protein >TCONS_00004167-protein ID=TCONS_00004167-protein|Name=TCONS_00004167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
FKLNKQPLNNYSFKKIEKHFLIRQTMSLSAKDDMRCTLVADKLRRIGDDM
NKKIMASGFSGGFSSGKKLSSSSGGYGKSLSGINKSMNKGKSTSVLNSRK
GTSL Run BLAST on NCBI transcript from alignment at sc0000039:223974..225313 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004167 ID=TCONS_00004167|Name=TCONS_00004167|organism=Clytia hemisphaerica|type=transcript|length=1340bp|location=Sequence derived from alignment at sc0000039:223974..225313 (Clytia hemisphaerica)
TAAGGATAAAGAAGTCGTTGTTTATGAAATCGATGTTCTGCATAAGCGTC
TCAAGTTTTTCTTATGTAAATAAATAACTAGTAAACAAGGATTGTAAACT
ATCCTTGTGAAGGAATACCTCGAATTCTAAAGGTGTATATCCTTTTACTT
TAGTACTAGTAAAATATCCGATTAATTTGTTTCTGTATCTATTGTTACAG
ATTCGATAAACATATATCACGAGGTTCGTCATCTCAAACTGCATccaact
ttgatgacgtcagcatattaCAAGTCATAGCCAAAAGGATTTACTGTTAT
AAATCATAATAAGAGGTTTTACGTGCTATTTCGTGAGTGCTATAtttgaa
gaaacaaaaaagtttaggAAGTATACTAGTTCTTTCTTGCGGCTTATGTT
TGTCATTCAGGTCTTTAGAACAATAATAAACAAGCGaaataagattttta
tttttgtgattttttttatgttattttcaaaataatgaaaaaaatgatat
aaCTACCTCCTAAAATTATGACACATCTAAATTTTTCGGATATGTACAAT
TCCTAATAATTTATTTCAAGCCCCAAAATAATTAACTCTCAGGACTTGAA
TATAATATTTACATATCAAaatagtttgatttttttgataaaaaaatatt
ttttacaataaaatatGTACAATTTTTGCAACAATATTTacatattttaa
aataattaaaattaatcatttttcaacaaCACCGACCGTCACCCAGTATA
ACCAACACCGCATCGTTGCGTTGTTGTTTCTTGTGAATCTTTCAGtgttt
caaaaacattatcttaaacGATAAAATGTTCAATGTACCATGATGTACAA
ATTTGAATTCGGTGTATTATCATCGGACGAATTATTAGGGCTTTGCTTTG
CGAGAATTTCTATCAAATGTTTTAATGGGCTCTTTCCACTTTATTTGTGG
TCCAAATAATCTACTCATCTTCATCACAATACCTCCCTCCACCAAAACCT
TCTTCAACAACAATTGTTAAGATGTTATAAACTTGTTCCTTTTCGAGAGT
TGAGTACAGATGTCGATTTTCCCTTGTTCATGGATTTGTTGATTCCACTA
AGGGATTTACCGTAACCACCGCTGCTTGATGAGAGTTTTTTACCGGATGA
AAAGCCACCTGAAAATCCACTCGCCATTATCTTTTTGTTCATATCATCCC
CGATTCGGCGTAATTTGTCTGCAACCAATGTGCATCGCATATCGTCTTTT
GCGCTGAGAGACATAGTTTGACGgatgagaaaatgtttttcaattttttt
aaaactgtaGTTGTTTAATGGTTGCTTGTTGAGCTTGAAG Coding sequence (CDS) from alignment at sc0000039:223974..225313 >TCONS_00004167 ID=TCONS_00004167|Name=TCONS_00004167|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000039:223974..225313 (Clytia hemisphaerica)
TTATAAACTTGTTCCTTTTCGAGAGTTGAGTACAGATGTCGATTTTCCCT
TGTTCATGGATTTGTTGATTCCACTAAGGGATTTACCGTAACCACCGCTG
CTTGATGAGAGTTTTTTACCGGATGAAAAGCCACCTGAAAATCCACTCGC
CATTATCTTTTTGTTCATATCATCCCCGATTCGGCGTAATTTGTCTGCAA
CCAATGTGCATCGCATATCGTCTTTTGCGCTGAGAGACATAGTTTGACGg
atgagaaaatgtttttcaatttttttaaaactgtaGTTGTTTAATGGTTG
CTTGTTGAGCTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004167-exon-sc0000039-1491911889:223974..225313 | TCONS_00004167-exon-sc0000039-1491911889:223974..225313 | Clytia hemisphaerica | exon |
| TCONS_00004167-exon-sc0000039-1510915933:223974..225313 | TCONS_00004167-exon-sc0000039-1510915933:223974..225313 | Clytia hemisphaerica | exon |
| TCONS_00004167-exon-sc0000039-1575043694:223974..225313 | TCONS_00004167-exon-sc0000039-1575043694:223974..225313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:223974..225313 . |
Blast
The following BLAST results are available for this feature:
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