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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004166 ID=TCONS_00004166|Name=TCONS_00004166|organism=Clytia hemisphaerica|type=transcript|length=1828bp
GGGCACTAGTAGTAAACCTAGCAAacattttattcattttgaatGGGTAA
GAAAGTTTACACACACAAGTACTGGGTTTGTAAGTTTCTTTTGGagtaaa
aaaacaacaagaaaatgttacaaaattcacttcaaatttATCCGACAATG
TTGACTATGTTATCGGTGATATATTGGACAAGCATTTGGAAGGAGGACTG
AAAATGAGTTTTGAGATATGAAACGATCAACTTGCAAGATAAACTTCTGT
ACGCTGTGACCAAAGAACCATACAAATCAAAATCCATTTGAAGATCTGCC
TTGTTCATTAGGACAGCTTCAAGATCGCGTTTCGTGATTGAAGGGAGATG
TTGTGACAGGTACTGAGTTAACTTTTCCAGTTGATATTTCGCCATGGTAT
ACGTGAAAGAGATAATGTAAGCACATACTGGTCCACTACCTGCTGTTAGG
ATGTCTTCCGTTAAGCCACGCTTAGCGAGCACTTTTGTTCGCTCATTAGT
GCGTCTTCCAACAACGATATCAGATAAAACGCAGGTAAGGAACAAACAGC
AGATGAGTGTCGAGAGTCTCGCCATCTTCAATGCTTTTACAAGAAAGTTT
ATAAACTTTCAGATTAAATAGCAATGACACTTacataaaaaacacaaatt
aataaaaatattgcaaCAGCTTAGCAATCAGCCTATCAAACAAATGCAAT
AAGATAGGTAAATTATAGCCATTTTAGTTATTTCActtgaaaaaataatg
atttacTTGAGCAAATATGGTTCGACGTGACCAGTCGTAAAAAGAGCTTA
AATTTGGTATTGAAAACTTTTGCCTACAGAacaaaattcctttgaaaatt
aTCAAGAACAAACCCATTAAACCTAcataaaaatttgtaaaaaatatttt
taattttaaaaatttaaatcccttttattgaaaaataaaaaaacctcgAC
AAAGATCTTTCATAAAATATAGACTAAGTTGAAAAGTGTAAGGCTCGTTT
CTGTCAACTTACATGTTGGctttaaaaaagctcaaaaCACCATCTAAAGC
TGATTTGACGTCAGCTGCAATTTTTGGGTCCTTTATATCACCTCTTGAAA
CCCATCCATGGGTCATGTCAACAAACTCCTTGGCTACAAATTTATCAGCA
AACTTCTCCTGTAAAATTGAAAACACTTCACCACCCTGTTTATATGTAGC
TAAATCGCCACTTGCAGGGTACAATAATTGTGGACATCTAATTTCCTTGG
CTAATGCTTCTGGTGAACTACCAAAGAGGCCAGCTAATTGAACACTTGGA
TGACAAGATGCTccacatttcaatttttcattcgcACACAGATGAAAGAC
TGATAAAGCACCAGCACAGAATCCTAGACAACCAATCGATTGATCAGCAC
CTTTCTCTTGTAAATGTGCCATCACTTTATCCACCCTTTCTTTCTGGTAA
GGAATCCAAGGAAATCCTTTGAACCAGCTTGATAATGGCTCAGGTTGAAT
TGGCTTGTCAGCTGGCCAAAAATCACCATCATAAATGTCAGGCAGGATTA
CATAATAGCCTTCATCAGCAATTTGATCACAAATCTGTTTAGTACGTCCT
CCATTATATCCAAAAATATCGTAAAATACGATGATTGATTTACCTCCTTT
TCCATTTGTATAACACTTCAATCCATCTAAATCGATTTCAACACCTTTTG
GTTGATATGTTGTTGACAGGGCAGCAGCACTATCAGCCGGACAAcatttt
tctgacatttttctttattttgttgtttgtaatgtttcactaaaatataa
agaaaaatataatttaatttCCAAAATT Run BLAST on NCBI protein sequence of TCONS_00004166-protein >TCONS_00004166-protein ID=TCONS_00004166-protein|Name=TCONS_00004166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MSEKCCPADSAAALSTTYQPKGVEIDLDGLKCYTNGKGGKSIIVFYDIFG
YNGGRTKQICDQIADEGYYVILPDIYDGDFWPADKPIQPEPLSSWFKGFP
WIPYQKERVDKVMAHLQEKGADQSIGCLGFCAGALSVFHLCANEKLKCGA
SCHPSVQLAGLFGSSPEALAKEIRCPQLLYPASGDLATYKQGGEVFSILQ
EKFADKFVAKEFVDMTHGWVSRGDIKDPKIAADVKSALDGVLSFFKANM Run BLAST on NCBI transcript from alignment at sc0000039:216952..218779 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004166 ID=TCONS_00004166|Name=TCONS_00004166|organism=Clytia hemisphaerica|type=transcript|length=1828bp|location=Sequence derived from alignment at sc0000039:216952..218779 (Clytia hemisphaerica)
AATTTTGGaaattaaattatatttttctttatattttagtgaaacattac
aaacaacaaaataaagaaaaatgtcagaaaaatgTTGTCCGGCTGATAGT
GCTGCTGCCCTGTCAACAACATATCAACCAAAAGGTGTTGAAATCGATTT
AGATGGATTGAAGTGTTATACAAATGGAAAAGGAGGTAAATCAATCATCG
TATTTTACGATATTTTTGGATATAATGGAGGACGTACTAAACAGATTTGT
GATCAAATTGCTGATGAAGGCTATTATGTAATCCTGCCTGACATTTATGA
TGGTGATTTTTGGCCAGCTGACAAGCCAATTCAACCTGAGCCATTATCAA
GCTGGTTCAAAGGATTTCCTTGGATTCCTTACCAGAAAGAAAGGGTGGAT
AAAGTGATGGCACATTTACAAGAGAAAGGTGCTGATCAATCGATTGGTTG
TCTAGGATTCTGTGCTGGTGCTTTATCAGTCTTTCATCTGTGTgcgaatg
aaaaattgaaatgtggAGCATCTTGTCATCCAAGTGTTCAATTAGCTGGC
CTCTTTGGTAGTTCACCAGAAGCATTAGCCAAGGAAATTAGATGTCCACA
ATTATTGTACCCTGCAAGTGGCGATTTAGCTACATATAAACAGGGTGGTG
AAGTGTTTTCAATTTTACAGGAGAAGTTTGCTGATAAATTTGTAGCCAAG
GAGTTTGTTGACATGACCCATGGATGGGTTTCAAGAGGTGATATAAAGGA
CCCAAAAATTGCAGCTGACGTCAAATCAGCTTTAGATGGTGttttgagct
tttttaaagCCAACATGTAAGTTGACAGAAACGAGCCTTACACTTTTCAA
CTTAGTCTATATTTTATGAAAGATCTTTGTcgaggtttttttatttttca
ataaaagggatttaaatttttaaaattaaaaatattttttacaaattttt
atgTAGGTTTAATGGGTTTGTTCTTGAtaattttcaaaggaattttgtTC
TGTAGGCAAAAGTTTTCAATACCAAATTTAAGCTCTTTTTACGACTGGTC
ACGTCGAACCATATTTGCTCAAgtaaatcattattttttcaagTGAAATA
ACTAAAATGGCTATAATTTACCTATCTTATTGCATTTGTTTGATAGGCTG
ATTGCTAAGCTGttgcaatatttttattaatttgtgttttttatgtAAGT
GTCATTGCTATTTAATCTGAAAGTTTATAAACTTTCTTGTAAAAGCATTG
AAGATGGCGAGACTCTCGACACTCATCTGCTGTTTGTTCCTTACCTGCGT
TTTATCTGATATCGTTGTTGGAAGACGCACTAATGAGCGAACAAAAGTGC
TCGCTAAGCGTGGCTTAACGGAAGACATCCTAACAGCAGGTAGTGGACCA
GTATGTGCTTACATTATCTCTTTCACGTATACCATGGCGAAATATCAACT
GGAAAAGTTAACTCAGTACCTGTCACAACATCTCCCTTCAATCACGAAAC
GCGATCTTGAAGCTGTCCTAATGAACAAGGCAGATCTTCAAATGGATTTT
GATTTGTATGGTTCTTTGGTCACAGCGTACAGAAGTTTATCTTGCAAGTT
GATCGTTTCATATCTCAAAACTCATTTTCAGTCCTCCTTCCAAATGCTTG
TCCAATATATCACCGATAACATAGTCAACATTGTCGGATaaatttgaagt
gaattttgtaacattttcttgttgtttttttactCCAAAAGAAACTTACA
AACCCAGTACTTGTGTGTGTAAACTTTCTTACCCattcaaaatgaataaa
atgtTTGCTAGGTTTACTACTAGTGCCC Coding sequence (CDS) from alignment at sc0000039:216952..218779 >TCONS_00004166 ID=TCONS_00004166|Name=TCONS_00004166|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at sc0000039:216952..218779 (Clytia hemisphaerica)
atgtcagaaaaatgTTGTCCGGCTGATAGTGCTGCTGCCCTGTCAACAAC
ATATCAACCAAAAGGTGTTGAAATCGATTTAGATGGATTGAAGTGTTATA
CAAATGGAAAAGGAGGTAAATCAATCATCGTATTTTACGATATTTTTGGA
TATAATGGAGGACGTACTAAACAGATTTGTGATCAAATTGCTGATGAAGG
CTATTATGTAATCCTGCCTGACATTTATGATGGTGATTTTTGGCCAGCTG
ACAAGCCAATTCAACCTGAGCCATTATCAAGCTGGTTCAAAGGATTTCCT
TGGATTCCTTACCAGAAAGAAAGGGTGGATAAAGTGATGGCACATTTACA
AGAGAAAGGTGCTGATCAATCGATTGGTTGTCTAGGATTCTGTGCTGGTG
CTTTATCAGTCTTTCATCTGTGTgcgaatgaaaaattgaaatgtggAGCA
TCTTGTCATCCAAGTGTTCAATTAGCTGGCCTCTTTGGTAGTTCACCAGA
AGCATTAGCCAAGGAAATTAGATGTCCACAATTATTGTACCCTGCAAGTG
GCGATTTAGCTACATATAAACAGGGTGGTGAAGTGTTTTCAATTTTACAG
GAGAAGTTTGCTGATAAATTTGTAGCCAAGGAGTTTGTTGACATGACCCA
TGGATGGGTTTCAAGAGGTGATATAAAGGACCCAAAAATTGCAGCTGACG
TCAAATCAGCTTTAGATGGTGttttgagcttttttaaagCCAACATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004166-exon-sc0000039-1491911889:216952..218779 | TCONS_00004166-exon-sc0000039-1491911889:216952..218779 | Clytia hemisphaerica | exon |
| TCONS_00004166-exon-sc0000039-1510915933:216952..218779 | TCONS_00004166-exon-sc0000039-1510915933:216952..218779 | Clytia hemisphaerica | exon |
| TCONS_00004166-exon-sc0000039-1575043694:216952..218779 | TCONS_00004166-exon-sc0000039-1575043694:216952..218779 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:216952..218779 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016787 | hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016787 |
hydrolase activity |
Blast
The following BLAST results are available for this feature:
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