TCONS_00004162 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004162
Unique NameTCONS_00004162
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004162 ID=TCONS_00004162|Name=TCONS_00004162|organism=Clytia hemisphaerica|type=transcript|length=220bp
ATCGACTTTCATGAACAGAGCAATGATGTCTCAAGAATCAGTCACTTTGA
ATCTTCTCATTAAACCAGCTCAAGAAGTCAAGCTTTGCGTCAATGTGAAT
TTTTTAAAGGAGCAAATAGAAATCGAGATATTGGAAAGTGCTACCGTTTT
AGACCTCAAAGAAGCCATCAGTGCTCAGTCAGGGATTCCACCATCTTTGA
TAGTCGTTGGTGGTTTTATT
Run BLAST on NCBI

transcript from alignment at sc0000039:139603..139822

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004162 ID=TCONS_00004162|Name=TCONS_00004162|organism=Clytia hemisphaerica|type=transcript|length=220bp|location=Sequence derived from alignment at sc0000039:139603..139822 (Clytia hemisphaerica)
AATAAAACCACCAACGACTATCAAAGATGGTGGAATCCCTGACTGAGCAC
TGATGGCTTCTTTGAGGTCTAAAACGGTAGCACTTTCCAATATCTCGATT
TCTATTTGCTCCTTTAAAAAATTCACATTGACGCAAAGCTTGACTTCTTG
AGCTGGTTTAATGAGAAGATTCAAAGTGACTGATTCTTGAGACATCATTG
CTCTGTTCATGAAAGTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002312XLOC_002312Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004162-exon-sc0000039-1491911889:139603..139822TCONS_00004162-exon-sc0000039-1491911889:139603..139822Clytia hemisphaericaexon
TCONS_00004162-exon-sc0000039-1510915933:139603..139822TCONS_00004162-exon-sc0000039-1510915933:139603..139822Clytia hemisphaericaexon
TCONS_00004162-exon-sc0000039-1575043694:139603..139822TCONS_00004162-exon-sc0000039-1575043694:139603..139822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:139603..139822 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.40074	1.37041	1.66834	0	0	0	2.08501	23.2436	16.2939	2.47176	19.7466	11.9624	6.32234	20.3545	5.57225	17.1341	11.8359	17.89	1.19613	5.25086	5.67387	0	0	0	15.2671	7.24156	20.5968	11.1919
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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