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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004161 ID=TCONS_00004161|Name=TCONS_00004161|organism=Clytia hemisphaerica|type=transcript|length=906bp
AAGAAACTTTGTATATGTATGGTGGATTTGTTGACTATTACAAATTGAAT
GTCGACATTACTGAGCCAAACTCATATCCCAATATCGTCAGCCAGCGGAG
AGAGGGTATTTGTAAGAAGATAGaaacatttcaaattgaaatCCCTCAAA
TTGAAATCCCCAAAAATGATGAACACAAACCGAACAATACGATGGAATTT
AAAACGAAACCGGACTTGACGATGAAAGATTTGAAGAAAACAATCGGCAA
GAGCAATAAACTCGATGGTGACTTTATTGCGTTAAGCTCAAAGAAAAGTC
CAAGCGTACTTTTGGATGATGAGCAGTTGTTAGCTGATTTACTCCTCGAC
TTAGATGAGGGTGAGTCACTCGAGTTGAATTTAAACATGATGGAACAAGA
ACTCTTGAGTAACCCCCATTCTCATCATATGTTGCAACTTGTGAAGCTAG
ATATTCCTTACTCAGATTCAAATAGGTATTCTTTGGTAGATTACCCATAT
TTGGAAATCGGGCTTCTTGGCATTTCTGCTATAAAGTCATGGGTCGAAGC
AAATTATGAAATACCTTGCGCAGAGCAGTTACCGACCTTACGTGAATTTC
TTGGAGAATGTAAAATCATTGAAAGTGAAACGTTCCCTGAACATTTGTGC
AACACTCGACTGGGTGTAAGAGTAAACCTGTTTGTGTATTCAACCAGTGA
CAAAAGTCTGACGTCTCTTTATCAGAAATTGGGAATACAGACAATATTAC
CAGCCAATGTATCCAGCTTTGGGACGACTAACATTTTGCAATATCATTAT
CGAAGGGGAAAAGAGAAGTTGGATGTATTCATCGAGAACTCGTTACAAAT
TCCGAAGCTCAAACAGCGACTTTTTGTAGATGGTTGTAGAGTAACGGCTA
ACGAta Run BLAST on NCBI protein sequence of TCONS_00004161-protein >TCONS_00004161-protein ID=TCONS_00004161-protein|Name=TCONS_00004161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
ETLYMYGGFVDYYKLNVDITEPNSYPNIVSQRREGICKKIETFQIEIPQI
EIPKNDEHKPNNTMEFKTKPDLTMKDLKKTIGKSNKLDGDFIALSSKKSP
SVLLDDEQLLADLLLDLDEGESLELNLNMMEQELLSNPHSHHMLQLVKLD
IPYSDSNRYSLVDYPYLEIGLLGISAIKSWVEANYEIPCAEQLPTLREFL
GECKIIESETFPEHLCNTRLGVRVNLFVYSTSDKSLTSLYQKLGIQTILP
ANVSSFGTTNILQYHYRRGKEKLDVFIENSLQIPKLKQRLFVDGCRVTAN
D Run BLAST on NCBI transcript from alignment at sc0000039:137173..138078 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004161 ID=TCONS_00004161|Name=TCONS_00004161|organism=Clytia hemisphaerica|type=transcript|length=906bp|location=Sequence derived from alignment at sc0000039:137173..138078 (Clytia hemisphaerica)
taTCGTTAGCCGTTACTCTACAACCATCTACAAAAAGTCGCTGTTTGAGC
TTCGGAATTTGTAACGAGTTCTCGATGAATACATCCAACTTCTCTTTTCC
CCTTCGATAATGATATTGCAAAATGTTAGTCGTCCCAAAGCTGGATACAT
TGGCTGGTAATATTGTCTGTATTCCCAATTTCTGATAAAGAGACGTCAGA
CTTTTGTCACTGGTTGAATACACAAACAGGTTTACTCTTACACCCAGTCG
AGTGTTGCACAAATGTTCAGGGAACGTTTCACTTTCAATGATTTTACATT
CTCCAAGAAATTCACGTAAGGTCGGTAACTGCTCTGCGCAAGGTATTTCA
TAATTTGCTTCGACCCATGACTTTATAGCAGAAATGCCAAGAAGCCCGAT
TTCCAAATATGGGTAATCTACCAAAGAATACCTATTTGAATCTGAGTAAG
GAATATCTAGCTTCACAAGTTGCAACATATGATGAGAATGGGGGTTACTC
AAGAGTTCTTGTTCCATCATGTTTAAATTCAACTCGAGTGACTCACCCTC
ATCTAAGTCGAGGAGTAAATCAGCTAACAACTGCTCATCATCCAAAAGTA
CGCTTGGACTTTTCTTTGAGCTTAACGCAATAAAGTCACCATCGAGTTTA
TTGCTCTTGCCGATTGTTTTCTTCAAATCTTTCATCGTCAAGTCCGGTTT
CGTTTTAAATTCCATCGTATTGTTCGGTTTGTGTTCATCATTTTTGGGGA
TTTCAATTTGAGGGatttcaatttgaaatgtttCTATCTTCTTACAAATA
CCCTCTCTCCGCTGGCTGACGATATTGGGATATGAGTTTGGCTCAGTAAT
GTCGACATTCAATTTGTAATAGTCAACAAATCCACCATACATATACAAAG
TTTCTT Coding sequence (CDS) from alignment at sc0000039:137173..138078 >TCONS_00004161 ID=TCONS_00004161|Name=TCONS_00004161|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at sc0000039:137173..138078 (Clytia hemisphaerica)
aTCGTTAGCCGTTACTCTACAACCATCTACAAAAAGTCGCTGTTTGAGCT
TCGGAATTTGTAACGAGTTCTCGATGAATACATCCAACTTCTCTTTTCCC
CTTCGATAATGATATTGCAAAATGTTAGTCGTCCCAAAGCTGGATACATT
GGCTGGTAATATTGTCTGTATTCCCAATTTCTGATAAAGAGACGTCAGAC
TTTTGTCACTGGTTGAATACACAAACAGGTTTACTCTTACACCCAGTCGA
GTGTTGCACAAATGTTCAGGGAACGTTTCACTTTCAATGATTTTACATTC
TCCAAGAAATTCACGTAAGGTCGGTAACTGCTCTGCGCAAGGTATTTCAT
AATTTGCTTCGACCCATGACTTTATAGCAGAAATGCCAAGAAGCCCGATT
TCCAAATATGGGTAATCTACCAAAGAATACCTATTTGAATCTGAGTAAGG
AATATCTAGCTTCACAAGTTGCAACATATGATGAGAATGGGGGTTACTCA
AGAGTTCTTGTTCCATCATGTTTAAATTCAACTCGAGTGACTCACCCTCA
TCTAAGTCGAGGAGTAAATCAGCTAACAACTGCTCATCATCCAAAAGTAC
GCTTGGACTTTTCTTTGAGCTTAACGCAATAAAGTCACCATCGAGTTTAT
TGCTCTTGCCGATTGTTTTCTTCAAATCTTTCATCGTCAAGTCCGGTTTC
GTTTTAAATTCCATCGTATTGTTCGGTTTGTGTTCATCATTTTTGGGGAT
TTCAATTTGAGGGatttcaatttgaaatgtttCTATCTTCTTACAAATAC
CCTCTCTCCGCTGGCTGACGATATTGGGATATGAGTTTGGCTCAGTAATG
TCGACATTCAATTTGTAATAGTCAACAAATCCACCATACATATACAAAGT
TTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004161-exon-sc0000039-1491911889:137173..138078 | TCONS_00004161-exon-sc0000039-1491911889:137173..138078 | Clytia hemisphaerica | exon |
| TCONS_00004161-exon-sc0000039-1510915933:137173..138078 | TCONS_00004161-exon-sc0000039-1510915933:137173..138078 | Clytia hemisphaerica | exon |
| TCONS_00004161-exon-sc0000039-1575043694:137173..138078 | TCONS_00004161-exon-sc0000039-1575043694:137173..138078 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:137173..138078 . |
Blast
The following BLAST results are available for this feature:
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