TCONS_00004160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004160
Unique NameTCONS_00004160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004160 ID=TCONS_00004160|Name=TCONS_00004160|organism=Clytia hemisphaerica|type=transcript|length=851bp
AAAAGTTGCACTCGTCAAAAAGATATCTTGAAAAGTGACGCTTAAGCTGA
TCAAAGATGACAAGCTTACAGACAGACACCAAATTCATCTTATATTCAAC
TCTCAATGGAGCAATAACGATCCTCATCCTAACTGTGCTAATCCTAATCA
TCCAAATCATATCTCTGGTCATCCACTGGAAATCCTCTTACAGATGTCCA
TGTTTTCGGTTATTCATCACCAGTGTCCTGATGTCGACCTTCATCTCAAA
CCTGATCTGCTTTACATGTAACATCCTTCTGATGTTCATCATTTACCAAG
AAGTTCACAatgaaacaatgtacgctgtcTATCTCATTAACAAAATGATG
ACGGTTGGTGCAGAGTTTGTTTGTATTATCCACATTTACCTGATTTCATT
TCAGCGTTACATAGCAGTGGTCTATCCGTTCAAAATCAGTCATTTATGGG
TGCTTTGTAAAGGTACCTATGTATGTTCTGCCGTTTGGGGTGTCACTTTG
TTCCTATTTGCTGGTTTATCAACTCTAGAGTTCTACACGTCAACTAATAT
CTTACGGCTGACCAAAAAAGTTCAAGGTTACATGATTCTGATTCTTATCC
TCGTCATAGTATATTACTACGCTCGGATTATTTACGTACTCGTTAAGCGA
TACCGAAATAAGAATCTTAAAACGAGTTCAACGAATCTTAGAGCTGTTTT
TATCAGCATTGCGCTTGGTGTTGCTTTCGTTCTTTCCTTTGGTCCAAAAG
CTATCGAGTTCATCATCTGGCAAGACATTGTTTTGACATGGACCATCTAC
TTGTACATTATCAGCTACTCTTACGATTCTTTACTTATCATCGGAAAATA
T
Run BLAST on NCBI

protein sequence of TCONS_00004160-protein

>TCONS_00004160-protein ID=TCONS_00004160-protein|Name=TCONS_00004160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MTSLQTDTKFILYSTLNGAITILILTVLILIIQIISLVIHWKSSYRCPCF
RLFITSVLMSTFISNLICFTCNILLMFIIYQEVHNETMYAVYLINKMMTV
GAEFVCIIHIYLISFQRYIAVVYPFKISHLWVLCKGTYVCSAVWGVTLFL
FAGLSTLEFYTSTNILRLTKKVQGYMILILILVIVYYYARIIYVLVKRYR
NKNLKTSSTNLRAVFISIALGVAFVLSFGPKAIEFIIWQDIVLTWTIYLY
IISYSYDSLLIIGKY
Run BLAST on NCBI

transcript from alignment at sc0000039:117950..118800

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004160 ID=TCONS_00004160|Name=TCONS_00004160|organism=Clytia hemisphaerica|type=transcript|length=851bp|location=Sequence derived from alignment at sc0000039:117950..118800 (Clytia hemisphaerica)
ATATTTTCCGATGATAAGTAAAGAATCGTAAGAGTAGCTGATAATGTACA
AGTAGATGGTCCATGTCAAAACAATGTCTTGCCAGATGATGAACTCGATA
GCTTTTGGACCAAAGGAAAGAACGAAAGCAACACCAAGCGCAATGCTGAT
AAAAACAGCTCTAAGATTCGTTGAACTCGTTTTAAGATTCTTATTTCGGT
ATCGCTTAACGAGTACGTAAATAATCCGAGCGTAGTAATATACTATGACG
AGGATAAGAATCAGAATCATGTAACCTTGAACTTTTTTGGTCAGCCGTAA
GATATTAGTTGACGTGTAGAACTCTAGAGTTGATAAACCAGCAAATAGGA
ACAAAGTGACACCCCAAACGGCAGAACATACATAGGTACCTTTACAAAGC
ACCCATAAATGACTGATTTTGAACGGATAGACCACTGCTATGTAACGCTG
AAATGAAATCAGGTAAATGTGGATAATACAAACAAACTCTGCACCAACCG
TCATCATTTTGTTAATGAGATAgacagcgtacattgtttcatTGTGAACT
TCTTGGTAAATGATGAACATCAGAAGGATGTTACATGTAAAGCAGATCAG
GTTTGAGATGAAGGTCGACATCAGGACACTGGTGATGAATAACCGAAAAC
ATGGACATCTGTAAGAGGATTTCCAGTGGATGACCAGAGATATGATTTGG
ATGATTAGGATTAGCACAGTTAGGATGAGGATCGTTATTGCTCCATTGAG
AGTTGAATATAAGATGAATTTGGTGTCTGTCTGTAAGCTTGTCATCTTTG
ATCAGCTTAAGCGTCACTTTTCAAGATATCTTTTTGACGAGTGCAACTTT
T

Coding sequence (CDS) from alignment at sc0000039:117950..118800

>TCONS_00004160 ID=TCONS_00004160|Name=TCONS_00004160|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at sc0000039:117950..118800 (Clytia hemisphaerica)
ATATTTTCCGATGATAAGTAAAGAATCGTAAGAGTAGCTGATAATGTACA
AGTAGATGGTCCATGTCAAAACAATGTCTTGCCAGATGATGAACTCGATA
GCTTTTGGACCAAAGGAAAGAACGAAAGCAACACCAAGCGCAATGCTGAT
AAAAACAGCTCTAAGATTCGTTGAACTCGTTTTAAGATTCTTATTTCGGT
ATCGCTTAACGAGTACGTAAATAATCCGAGCGTAGTAATATACTATGACG
AGGATAAGAATCAGAATCATGTAACCTTGAACTTTTTTGGTCAGCCGTAA
GATATTAGTTGACGTGTAGAACTCTAGAGTTGATAAACCAGCAAATAGGA
ACAAAGTGACACCCCAAACGGCAGAACATACATAGGTACCTTTACAAAGC
ACCCATAAATGACTGATTTTGAACGGATAGACCACTGCTATGTAACGCTG
AAATGAAATCAGGTAAATGTGGATAATACAAACAAACTCTGCACCAACCG
TCATCATTTTGTTAATGAGATAgacagcgtacattgtttcatTGTGAACT
TCTTGGTAAATGATGAACATCAGAAGGATGTTACATGTAAAGCAGATCAG
GTTTGAGATGAAGGTCGACATCAGGACACTGGTGATGAATAACCGAAAAC
ATGGACATCTGTAAGAGGATTTCCAGTGGATGACCAGAGATATGATTTGG
ATGATTAGGATTAGCACAGTTAGGATGAGGATCGTTATTGCTCCATTGAG
AGTTGAATATAAGATGAATTTGGTGTCTGTCTGTAAGCTTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002310XLOC_002310Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004160-exon-sc0000039-1491911889:117950..118800TCONS_00004160-exon-sc0000039-1491911889:117950..118800Clytia hemisphaericaexon
TCONS_00004160-exon-sc0000039-1510915933:117950..118800TCONS_00004160-exon-sc0000039-1510915933:117950..118800Clytia hemisphaericaexon
TCONS_00004160-exon-sc0000039-1575043694:117950..118800TCONS_00004160-exon-sc0000039-1575043694:117950..118800Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004160-proteinTCONS_00004160-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:117950..118800 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.0368037	0.808556	0.229007	0.219654	0.0336747	0.290391	0.340162	1.76232	1.65973	0.748016	0.156367	0.253446	0.288024	0.296658	0.158856	0.0757742	0.161737	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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