TCONS_00004156 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004156
Unique Name	TCONS_00004156
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	493

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000039:839164..846692-

transcript sequence

>TCONS_00004156 ID=TCONS_00004156|Name=TCONS_00004156|organism=Clytia hemisphaerica|type=transcript|length=493bp
aaaaaaacaaaccatggTAAAAATCAAACCTCAATTTTATGTATCATATC
ATACATCTGATCAACATCCATTACAATCCTGTTTGAAATGTGATGAAAAC
AAACGATTGTGACATATGGTAATTCTTATTATCAGATATTTGATTAGTAA
AAGTACTGAACTAAAGATAATTACTGCTGTGGAGGAGCTTTGAGCAAGAC
ATATTATAAGATCGGAAGAAAACTACAATTGAAGGTTAAtgaaaattggc
acagatgttCTGCAGATGTTCCCTATCATGACGCAAAcctccaggaagaa
aaaaagatttgatgacATCATCCAAAAagcaataaatagtttagaagtta
tcagcattttaaaatttgagattttatgtcatgtttcacaataaagtcat
aaaacctattATGAGCCAAacattttgcacaagtactcttaataaagTTT
TACTAAAagacagaaaatttcaaatcatttcaaaaacCTTTCT

Run BLAST on NCBI

transcript from alignment at sc0000039:839164..846692-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004156 ID=TCONS_00004156|Name=TCONS_00004156|organism=Clytia hemisphaerica|type=transcript|length=7529bp|location=Sequence derived from alignment at sc0000039:839164..846692- (Clytia hemisphaerica)
AAAAAAACAAACCATGGTAAAAATCAAACCTCAATTTTATGTATCATATC
ATACATCTGATCAACATCCATTACAATCCTGTTTGAAATGTGATGAAAAC
AAACGATTGTGACATATGGTAATTCTTATTATCAGATATTTGGTGAGTAG
TTTTTTGAAGTTATGCCTTAAATCTTCATACTAAACTTAAAATTAACAAT
CTGAATAACATTTCCAAATCTACTTTTAAATCCCACCTTAATCGCTATCT
TTTAACTAAACTTGCAGAACAATAANNNNNNNNNNNNNNNNNNNNNNNNN
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TACTTTGAGCAAACATACATTGATATAAACATCCTACTATATTTTATAAC
TTGAGCTAGTATTTTTATTTTTAACACAAAAAATGAAAACATGTACATAT
TTTTAACAGCTATCCTTGACCTGTACATCTTATATCGCATATAGCTTTAT
CACGGTAAATATATTTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTTAAACCCGGGGGGGGTACTATAGGGCAAGATGGGTGTTACGGGGATGC
TCCGCTGGTCAGGGTACCTTTTTTTACCTCCAGGAGTCCCAGGTAGGGTT
GCAAAAACACCAAAATAGAAAATTCAGTCCCTCGTAGGGTGCCTATTTTT
GGAAAATTTGGGGAAAAAGTAGAAAATTTGAGAACATTTTAACGTAGTGA
GTGGTCTAAGTAGTAAGAAAACGGCTACTCTTTTTTAGAATCAACCTTAC
AATCTAGTTTTTATACTTTTATCGGCGTGACTGATCCTTTTGTTTTGATA
ATAACATCAAAGCGGGAACTTTCTTTCCTTTTTCTTTCTCGGAAGTTCGC
ACTTTCCTTCCAAGTCTCCAAGCGTGGTTAGCTCAATCGGTTAGAGCGTC
TATCTCACAAGCATGGGCTTCCAAGTTCGATCCCACTGGGTGTCAAATTT
TTCAATTCTTCAAATTTCTTTTTTTAATCCTCTTTCTATTATAATGAAGG
TCAATCAAACAAGTAGAAGTAACTAAGTACCTAGCATATATTACCTCCGC
TCTCTGTGTAAGGTTTAGATAAGCTTTGATAGCATCACTTAATAAGAACT
TTTTGAAGTTTTTTTTTTCTTCAATCTTTTTTTTACCACAAGCGATTATT
CAAGGCTGAGATATAGAAGAAAGGGTATAGGCGTTTGCGCCTGCATTTGG
TGACTGACAGTTTCAGTTTCAGTTTCACTACTTTCACTTTCACTTTTAGC
CAGCGAGTGAGCGAGTAATTCTTTGTAAGAGAATCGTCAAATAACTTCTT
TCAGAATCATTCGTGGGTTCAATCCCCACTCGATTCGTTACCTTTGAGAA
AACTGGGAAGTACATTAGTGCAGGATCCGTTGATTCATTACCCATAAGTA
ATACGCACTTGATTTCACACAGTGACTCTTGATGGACTAGTTGTCCGAAA
TCGGGGCTCCGTTGGGCTAATGCCTCTCCCCAATGTACGTAGCTTAACAG
TTCTCTCAAAGTTAGCGGGTTGGTTGGAGATTGGACACTAGCTGTGTCTC
AGTTCGTGGCAATTCCATTGATTCGTAGAATTCAGGTACCNNNNNNNNNN
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GTATTTCTTGAATTTCTTGAGCTGTACTTTATATTTTTTCATGAAATTTT
GCACACTGATGCAAAATGTCAATACCCAAATTGTGGTGGAGCCCGATTTT
CGAAAAACATCTTTTTCGGCCGAAAATGCCGGAAATATGCCGGAAAAACT
GTTTTTTGGCATTTTCTCGAGATTTTATCATTAGTTTTTTTTTCTGATTT
TTTGCTCAAAGATGCGTATTAACAATGCCCTAAACATGGCCGAGTCCGAT
TTTTGAGAAAATTTTTTTTCCGGCGGAAAATGCCTGAAATATGCTGGAAA
TCGCCGTTTTTCTAGGTTTTCATTGGACTTTTTCCTTATAGTTGGTTGTT
TTTTCATTCAAAAACATTATTAATAGCAATGCCCACCATCAAGCATGTTT
CAATTTTCAATAAAATTATTTTTGAAGCCGGAACTATTTTAAAAGTCGTC
GGAACAACCTATTTTCGCCGGAATGACAGTATTTCTTGAATTTCTTTATT
TTTGCAGATTTCATTGGATTTTTTCCTTATATTTCTATGTTTTTCACACA
AAAACATTATTGATAACAATGCTCACCATCAATCATGATTCAATTGTCAA
TAAAACTGATTTTTGCGACCAGAACTTCCTATTTATTTTTTCCTTACAAC
CCTTCCCTCTCCCCCCATCAACAATCAATGATGAATTTATTGTGTTGTGT
ATTTTCGCTAAGCGCTATATTTTCTGACTGATTTTTTTCATTTTTCTTTT
TGCATTGCTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATATAGC
TTGTTTTTAATTTTTTCCATCGATTGTCACAGGTTCTATCAGGTTATTCC
AGTAACTCTTATAGGTTCAGATTAGTTTTGAGTTTGAATGCTATTATCTT
TGAGTGTTAGGCTTTTTTCATTCATTGTGATATACTAACTATATTATGTT
GGTTTTTATATAAAAGTTAGGAGCCATTCAGGGTGGGCAAAAAAAGTGGT
GAGACAAAAGTGTGCTTCTTGAATAGCAATTAGTGCCATTGAAATTCCAA
AACTTTGAAAGTTGTCTTTTTACGACATCCCTGATGACATTCTCACACAG
TTTCATAGTTTTTTTTCATATTTTGATGAAACCGAGACAGGGGGTGCTGA
AATTTTGAATTTCCTAAGAGAGCGGTTACCAGTTAAGGTCTTCCTACTTC
ATTATATTGTGTACGAAAATTCCAAAATTGTTTCTTTTTAACAAAAATAT
CCTGCATCTCTATAAAATTCCGTTTTGATTGATGGGTTGAAGCCATTGCA
TAAAGGGGGCGGACTGAAATTTCTATAGGATTTCTGAAAGGGGGATCTGA
ATTTTCAAATGTATTTCCTAAGGAGGTTACTACATAGGGGTTCTCCAAAT
GTATTGCAAGATTTCCAGCACAACTAACCAAAGACAAATGGAATTTCTTA
TGCACTAATTTTGCATTATTTTTTTGCCTGAACACTTTTTCTGTCAAATG
AGTATCAAAAAAAATGCCAAGAATTTTGCCAAAAAACCTTGAAAAACTAC
TTAAAATGACCAAAAAACCTTGAAAACCTTGAAAATCCCGAAAAAAAATC
TGTAGACACCCTGACGCTACTTTGAGTAGTTTTTTTGAAATTTCTTCCTG
TTACCCCCCACCCCTCCCCAGGAGAACACACTTAAGTTCATGTATGTTGA
GCGAATGTTAACTATTGTTTCGTTCCAGATTAGTAAAAGTACTGAACTAA
AGATAATTACTGCTGTGGAGGAGCTTTGAGCAAGACATATTATAAGATCG
GAAGAAAACTACAATTGAAGGTTAATGAAAATTGGCACAGATGTTCTGCA
GATGTTCCCTATCATGACGCAAACCTCCAGGAAGAAAAAAAGATTTGATG
ACATCATCCAAAAAGCAATAAATAGTTTAGAAGTTATCAGCATTTTAAAA
TTTGAGATTTTATGTCATGTTTCACAATAAAGTCATAAAACCTATTATGA
GCCAAACATTTTGCACAAGTACTCTTAATAAAGTTTTACTAAAAGACAGA
AAATTTCAAATCATTTCAAAAACCTTTCT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002306	XLOC_002306	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004156-exon-sc0000039-1575043694:846551..846692	TCONS_00004156-exon-sc0000039-1575043694:846551..846692	Clytia hemisphaerica	exon
TCONS_00004156-exon-sc0000039-1575043694:839164..839514	TCONS_00004156-exon-sc0000039-1575043694:839164..839514	Clytia hemisphaerica	exon
TCONS_00004156-exon-sc0000039-1510915933:846551..846692	TCONS_00004156-exon-sc0000039-1510915933:846551..846692	Clytia hemisphaerica	exon
TCONS_00004156-exon-sc0000039-1510915933:839164..839514	TCONS_00004156-exon-sc0000039-1510915933:839164..839514	Clytia hemisphaerica	exon
TCONS_00004156-exon-sc0000039-1491911889:846551..846692	TCONS_00004156-exon-sc0000039-1491911889:846551..846692	Clytia hemisphaerica	exon
TCONS_00004156-exon-sc0000039-1491911889:839164..839514	TCONS_00004156-exon-sc0000039-1491911889:839164..839514	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000039	supercontig	sc0000039:839164..846692 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0044	1.47291	1.51682	1.80629	6.0647	5.32489	4.17577	5.7136	3.17938	2.47746	3.0375	2.59614	1.75343	1.5652	1.99344	2.13525	4.88513	3.26807	0.536446	0.708776	1.58383	2.3115	2.00924	0.915234	1.88741	3.83045	1.91258	0.932868	1.56227	0.850132

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00004156 vs. Swiss-Prot (Human)

BLAST of TCONS_00004156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00004156 (transcript) - C. hemisphaerica