|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004154 ID=TCONS_00004154|Name=TCONS_00004154|organism=Clytia hemisphaerica|type=transcript|length=3306bpRun BLAST on NCBI protein sequence of TCONS_00004154-protein >TCONS_00004154-protein ID=TCONS_00004154-protein|Name=TCONS_00004154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=966bp MADLAQLSEVLKCTLDNDNAKRKEAEKYLDSADSTPNYGLSLLHLLTAEGRun BLAST on NCBI transcript from alignment at sc0000039:816851..846715- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004154 ID=TCONS_00004154|Name=TCONS_00004154|organism=Clytia hemisphaerica|type=transcript|length=29865bp|location=Sequence derived from alignment at sc0000039:816851..846715- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000039:816851..846715- >TCONS_00004154 ID=TCONS_00004154|Name=TCONS_00004154|organism=Clytia hemisphaerica|type=CDS|length=60921bp|location=Sequence derived from alignment at sc0000039:816851..846715- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004154 vs. Swiss-Prot (Human)
Match: XPO2 (Exportin-2 OS=Homo sapiens GN=CSE1L PE=1 SV=3) HSP 1 Score: 1112.06 bits (2875), Expect = 0.000e+0 Identity = 553/975 (56.72%), Postives = 717/975 (73.54%), Query Frame = 2
Query: 152 LSDI*MADLAQLSEVLKCTLDNDNAKRKEAEKYLDSADSTPNYGLSLLHLLTAEGADDVVRVAAAITFKNFVKKNWRMIEGEQNKISENDRTLIKTNIVELMLKSPDSIQRQLSEAISIIGREDFPEKWNDLLGNLTGYMKVSTDMNLKVVDGVLQTAHSLFKRFRYEFKSQALWVELKFVLDHFASPLLDLFEGMIKRVTETASNPTLQKEVFEVLVMICKVFYSLNYQDLPEFFEDNIRRWMEPFHMLMVSDFSHLIDKDSNEAGPIEKIRSQICDNVAMYAQKYDEEFQEYLPNFVQAIWNLLTSTDSNIKNDLLVSNAIQFLASVCERPHYKDIFKAEDTLQSICQNVIVPNMMFRDADEELFEDNPEEYIRKDIEGSDIDTRRRSACDLVRGLCKFYEQEVTNIFSAYVNQLLSQYQSNPQSNWKAKDACIYIVTSLATKKSTAKHGTTETNQLVNLEDFYKTQIEPDLSASDVDQYPVLKADAIKYVITFRSVLPREVLLKSLGYMVNLLKTNINVVHSYAANAIERLLMVRAANTTNVITPNDVLPINKELFLNLFGALSFPGSSENEYIMKAIMRVCTTLQDSIAPYIKDIITSLANKLAEVSKNPSKPQFNHYLFESICTLIRGVGKTNKPGIAVIEETIFPVVQIILMNDVTEFLPYVFQVLSLTLETREQGVQGPYMDLFPLLLQPVLWERQGNVPALTRLLQAYVKRGPEEIIK--SNQLNPLLGVFQKLLASRSTDHEAFYLLSTMTELMPWNAISESMKQIFVLLFQRLQTSKTTKYVKGFIVYISIFAGKKSPTDLQKMIDNVQPKLFGMMLEKILVSDLQKVSGMTERKICAVGVTKILTECPPVFEM-YIEHWPKLLEALIGLFELPQDETIGADEHFIDVEDTPGYQTAFSQLAFASKKDADPFSEIV-CPKEFLAKQLYRLSTAHPGKINPLCK-AVNPEALNFLQGYLTKAQVQL 3061
LSD A+L L+E LK TLD D A R+ AEK+L+S + NY L LL L + D+V++V A++TFKN++K+NWR++E E NKI E DR IK NIV LML SP+ IQ+QLS+AISIIGREDFP+KW DLL + + + V++GVL+TAHSLFKR+R+EFKS LW E+K VLD FA PL +LF+ I+ + A++ + + +F L++I K+FYSLN+QDLPEFFEDN+ WM FH L+ D L D EAG +E ++SQICDN A+YAQKYDEEFQ YLP FV AIWNLL +T +K DLLVSNAIQFLASVCERPHYK++F+ ++TL SIC+ VIVPNM FR ADEE FEDN EEYIR+D+EGSDIDTRRR+ACDLVRGLCKF+E VT IFS YVN +L +Y NP NWK KDA IY+VTSLA+K T KHG T+ N+LVNL +F+ I PDL +++V+++PVLKAD IKY++ FR+ +P+E LL S+ ++N L+ VVH+YAA+A+ERL +R N + T ++ P + L NLF AL+ PGSSENEYIMKAIMR + LQ++I PYI +IT L KL VSKNPSKP FNHY+FE+IC IR K N + EE +F V IL NDV EF+PYVFQV+SL LET + + YM LFP LLQPVLWER GN+PAL RLLQA+++RG I ++++ LLGVFQKL+AS++ DH+ FYLL+++ E MP ++ + KQIF+LLFQRLQ SKTTK++K F+V+I+++ K LQ++ D +QPK+FGM+LEKI++ ++QKVSG E+KICAVG+TK+LTECPP+ + Y + W LL++LIGLFELP+D+TI +EHFID+EDTPGYQTAFSQLAFA KK+ DP ++V PK LA+ L++LSTA PG++ + ++N EAL +LQGYL A V L
Sbjct: 3 LSD---ANLQTLTEYLKKTLDPDPAIRRPAEKFLESVEGNQNYPLLLL-TLLEKSQDNVIKVCASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSG---DFHVINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASALRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNLLVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMEFRAADEEAFEDNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNPSVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVLKADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATLFTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQKLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFIPYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRLLQAFLERGSNTIASAAADKIPGLLGVFQKLIASKANDHQGFYLLNSIIEHMPPESVDQYRKQIFILLFQRLQNSKTTKFIKSFLVFINLYCIKYGALALQEIFDGIQPKMFGMVLEKIIIPEIQKVSGNVEKKICAVGITKLLTECPPMMDTEYTKLWTPLLQSLIGLFELPEDDTIPDEEHFIDIEDTPGYQTAFSQLAFAGKKEHDPVGQMVNNPKIHLAQSLHKLSTACPGRVPSMVSTSLNAEALQYLQGYLQAASVTL 970 The following BLAST results are available for this feature:
BLAST of TCONS_00004154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.