TCONS_00004152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004152
Unique NameTCONS_00004152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1164

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004152 ID=TCONS_00004152|Name=TCONS_00004152|organism=Clytia hemisphaerica|type=transcript|length=1164bp
tagctttccaaaaatgtataacaagtgctttgactaaaaaaatcgagcga
cctcaaaaaaacgaacaaatttccccctactataaacacatcaatttttt
caagcaaCATATGTCGCGTGTATTCAGTGTATTTTGTAATTATtaaattg
aatgtttttaaagaagaaaatcttttgatacattttaagaaatcaaaaga
cgTTAACAACCAATTACCAAAAAtttcaactcctgttttctcCTGTTGAA
AACTTTTGGGCAAAATGCATTACAGGCCTATTGATTgttgtttctttttg
tttattgtcAAACCGCTGTCTCTGTGGGTTCTTATTCTTTACTTGGACCT
TGGGTGAATATGGAATTCTCTTGATAGCTTTAGAAGTTGATAAGTTAACA
TAATGAAATATTCTTGGATCATTACAGCTCAAAATTAACACAAAATCTCT
CATGTCTTTGACATGATATAATAATACCCGTGAAGGCTTGCTGCCCATCG
TAGAAATCTTCAAATTATAATAATACATATTCTTTTTTAGTAGGAATCGG
ctcgaaaacatttttttcaatgaatGTTCTGGTGTTAGGTACTGAAGGCT
CTGGAAAGTCacttttgataaaaagattGCAATTTCTGTTGACCCATGGA
ACCGAGATAAAGCCAACCAGTTTCAGTATTCAGCGTCCTGTATTCTATTG
CTTTCTGTGTTATCGAATCCTTTGAATAATCATAAACGAGTACTGATTTT
GTTCAACAAAACAGATTTTCCCACTGCTATGAATAGTTTAATGATAAGAA
ATTTATTTCGATTAAACGATCTGGTAAAATCTGAAAAGCATGGTATTGAG
ATTCTGGAATGCAGTTGTGTTgacaaaaatggatttaaagaCTTGATTAA
CTGGTTAAATCAGTCAGTGACAGAATTCATGAAAGGTCAGAGAGCACTTT
AAATAATATCTATCATATTATATTGTCTGTACATAAATTTTATTTGTATT
ATTTATATCATTTgcattttattttgtatattttagttATCTCTATGGAT
ATAATATTTGGTTTTCTCCTTCCATACTGAGGTCTTGTTCTGTTAACTCC
CAATATTTTTAAGTGGTTTCATGAAATATTCACGAGACTCCTACTGTTTc
atttactttctttt
Run BLAST on NCBI

transcript from alignment at sc0000039:696855..698181-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004152 ID=TCONS_00004152|Name=TCONS_00004152|organism=Clytia hemisphaerica|type=transcript|length=1327bp|location=Sequence derived from alignment at sc0000039:696855..698181- (Clytia hemisphaerica)
TAGCTTTCCAAAAATGTATAACAAGTGCTTTGACTAAAAAAATCGAGCGA
CCTCAAAAAAACGAACAAATTTCCCCCTACTATAAACACATCAATTTTTT
CAAGCAACATATGTCGCGTGTATTCAGTGTATTTTGTAATTATTAAATTG
AATGTTTTTAAAGAAGAAAATCTTTTGATACATTTTAAGAAATCAAAAGA
CGTTAACAACCAATTACCAAAAATTTCAACTCCTGTTTTCTCCTGTTGAA
AACTTTTGGGCAAAATGCATTACAGGCCTATTGATTGTTGTTTCTTTTTG
TTTATTGTCAAACCGCTGTCTCTGTGGGTTCTTATTCTTTACTTGGACCT
TGGGTGAATATGGAATTCTCTTGATAGCTTTAGAAGTTGATAAGTTAACA
TAATGAAATATTCTTGGATCATTACAGCTCAAAATTAACACAAAATCTCT
CATGTCTTTGACATGATATAATAATACCCGTGAAGGCTTGCTGCCCATCG
TAGAAATCTTCAAATTATAATAATACATATTCTTTTTTAGTAGGAATCGG
CTCGAAAACATTTTTTTCAATGAATGTTCTGGTGTTAGGTACTGAAGGCT
CTGGAAAGTCACTTTTGATAAAAAGATTGCAATTTCTGTTGACCCATGGA
ACCGAGGTAAATTTTGAAGATGTCCCATCCACTATTCCTACAGTTGGTAT
CAATCTAACCAAAGTTAATGTTGGTAAACTAGATGTAGAGTTGAGAGAAG
TGGGTGGCGCTGTGGCACCACTATGGAAAAAATATTTTGCTGAGTCAAAT
TGTATTATTTATGTTGTAGATAAAGCCAACCAGTTTCAGTATTCAGCGTC
CTGTATTCTATTGCTTTCTGTGTTATCGAATCCTTTGAATAATCATAAAC
GAGTACTGATTTTGTTCAACAAAACAGATTTTCCCACTGCTATGAATAGT
TTAATGATAAGAAATTTATTTCGATTAAACGATCTGGTAAAATCTGAAAA
GCATGGTATTGAGATTCTGGAATGCAGTTGTGTTGACAAAAATGGATTTA
AAGACTTGATTAACTGGTTAAATCAGTCAGTGACAGAATTCATGAAAGGT
CAGAGAGCACTTTAAATAATATCTATCATATTATATTGTCTGTACATAAA
TTTTATTTGTATTATTTATATCATTTGCATTTTATTTTGTATATTTTAGT
TATCTCTATGGATATAATATTTGGTTTTCTCCTTCCATACTGAGGTCTTG
TTCTGTTAACTCCCAATATTTTTAAGTGGTTTCATGAAATATTCACGAGA
CTCCTACTGTTTCATTTACTTTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002304XLOC_002304Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004152-exon-sc0000039-1575043694:697526..698181TCONS_00004152-exon-sc0000039-1575043694:697526..698181Clytia hemisphaericaexon
TCONS_00004152-exon-sc0000039-1575043694:696855..697362TCONS_00004152-exon-sc0000039-1575043694:696855..697362Clytia hemisphaericaexon
TCONS_00004152-exon-sc0000039-1510915933:697526..698181TCONS_00004152-exon-sc0000039-1510915933:697526..698181Clytia hemisphaericaexon
TCONS_00004152-exon-sc0000039-1510915933:696855..697362TCONS_00004152-exon-sc0000039-1510915933:696855..697362Clytia hemisphaericaexon
TCONS_00004152-exon-sc0000039-1491911889:697526..698181TCONS_00004152-exon-sc0000039-1491911889:697526..698181Clytia hemisphaericaexon
TCONS_00004152-exon-sc0000039-1491911889:696855..697362TCONS_00004152-exon-sc0000039-1491911889:696855..697362Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:696855..698181 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.2056	22.5161	13.51	10.5047	13.5434	7.99404	6.22726	6.16795	3.87233	4.74639	5.24018	2.56546	2.03785	2.18126	1.74732	1.80196	2.80402	2.14791	1.42424	1.37829	4.55495	3.33219	12.1935	10.7782	1.87185	3.03095	3.9133	2.83813	4.51307	5.59803
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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