TCONS_00004147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004147
Unique NameTCONS_00004147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004147 ID=TCONS_00004147|Name=TCONS_00004147|organism=Clytia hemisphaerica|type=transcript|length=839bp
tTGTTCTTTTGGTTGTGGTTTGTGTGGAGCATGCGTATTGCGTTAAAACA
TTCCACGATGAAGAACTGCATTCGAAAATCCCGCTTCGTTTGAAACGTGA
AATCGAAGAACTTGTTCACAAACAACTTCATCAAACCATCTCATTGCATT
ACAAtacaaatgatgacgtcatcagcttgTCACGTGATCCGATTATCAAA
ACGAATTTTCACCATCGAGCAAGAAGAGATTTAGGTGACGGTATTGCTGG
CAATGAAACAGTGTATTCCGAGTGGAGCCACTTCGGATTTTGTTCAGCCA
AGTGTGGTGGCGGAATTCGCGTACGAAGTCGAGAATGTTTGAATGGAACT
TGTTTGAATGAAGATTTGATAGAAAAACAATCATGTGGCAACTTCCCTTG
TGTCTCTGGTTCATACGTCTTGGAAGGGATTTCCGCAGATTGGATACTCC
GAGATTTGACAGATGCCATCACTATCAAATTCTTTGTTCTACTGAATAAA
ATCTTCCTTGGCAAGTTGACCAGCACTGAGATCAAACTTTACAATTACGA
ACTCACCTCGTCGACATTCAAGTTTGCACAGAGCATCCAAGTTCAAGATG
GCATCTCTTTCACAATCATGGAAACTGAACAATCAATCTACCTGGTGGTC
CTGGAGAAGTTTTCCGGTCATTATTTCGGTGTTTCCTCGAGAATGTACAT
GTATGATCCATCAAGACTCTCCGGAGGTGTCTTCCACACATATCAACCTA
TCTACTTCAAAGTTTACGATCCTTCAGCTGTTACCAGCCTCGAAATTTAT
GGCAAACCGTATTTAGCTGTTGTCAACAGGAAAAATAAA
Run BLAST on NCBI

transcript from alignment at sc0000039:681064..683007-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004147 ID=TCONS_00004147|Name=TCONS_00004147|organism=Clytia hemisphaerica|type=transcript|length=1944bp|location=Sequence derived from alignment at sc0000039:681064..683007- (Clytia hemisphaerica)
TTGTTCTTTTGGTTGTGGTTTGTGTGGAGCATGCGTATTGCGTTAAAACA
TTCCACGATGAAGAACTGCATTCGAAAATCCCGCTTCGTTTGAAACGTGA
AATCGAAGAACTTGTTCACAAACAACTTCATCAAACCATCTCATTGCATT
ACAATACAAATGATGACGTCATCAGCTTGTCACGTGATCCGATTATCAAA
ACGAATTTTCACCATCGAGCAAGAAGAGGTATTGGCCCGATTTCTTTCTG
AAACAGTTTCTATTCAAATGTGTTCGAAAAACCAAACTATAGTGGGAACT
CGTTTTAGTTTTAAACGAGAATCAAAATTTCAATATAAGGAAGTAGAGAT
GGGAATAATTCTGGTCCAGCCAATGGAAAACAATGTCTCACCAAAGACCT
TTTTCTACTGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTAAGACTAATTGTATGACATTTTATTTTAACTCAGATTTAGGT
GACGGTATTGCTGGCAATGAAACAGTGTATTCCGAGTGGAGCCACTTCGG
ATTTTGTTCAGCCAAGTGTGGTGGCGGAATTCGCGTACGAAGTCGAGAAT
GTTTGAATGGAACTTGTTTGAATGAAGATTTGATAGAAAAACAATCATGT
GGCAACTTCCCTTGTGTCTCTGGTAAGCGCTATATTTATTTTGTAATGTT
TGTTTATATTTTCATAACCTGAAAAATAAGAAAAAGGAAGAGATTGCATT
TGCCTCGTTTCTGGATATAGCAGTAATTTTATGTAATTTTTGCAATTTTC
AATGAACACTTTATGATAAGCACAGCTTGAATTTAACTTTTCTTCGAAAT
TTCTCTTTGACAGGTTCATACGTCTTGGAAGGGATTTCCGCAGATTGGAT
ACTCCGAGATTTGACAGATGCCATCACTATCAAATTCTTTGTTCTACTGA
ATAAAATCTTCCTTGGCAAGTTGACCAGCACTGAGATCAAACTTTACAAT
TACGAACTCACCTCGTCGACATTCAAGTTTGCACAGAGCATCCAAGTTCA
AGATGGCATCTCTTTCACAATCATGGAAACTGAACAATCAATCTACCTGG
TGGTCCTGGAGAAGTTTTCCGGTCATTATTTCGGTGTTTCCTCGAGAATG
TACATGTATGATCCATCAAGACTCTCCGGAGGTGTCTTCCACACATATCA
ACCTATCTACTTCAAAGTTTACGATCCTTCAGCTGTTACCAGCCTCGAAA
TTTATGGCAAACCGTATTTAGCTGTTGTCAACAGGAAAAATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002302XLOC_002302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004147-exon-sc0000039-1575043694:682780..683007TCONS_00004147-exon-sc0000039-1575043694:682780..683007Clytia hemisphaericaexon
TCONS_00004147-exon-sc0000039-1575043694:681686..681865TCONS_00004147-exon-sc0000039-1575043694:681686..681865Clytia hemisphaericaexon
TCONS_00004147-exon-sc0000039-1575043694:681064..681494TCONS_00004147-exon-sc0000039-1575043694:681064..681494Clytia hemisphaericaexon
TCONS_00004147-exon-sc0000039-1510915933:682780..683007TCONS_00004147-exon-sc0000039-1510915933:682780..683007Clytia hemisphaericaexon
TCONS_00004147-exon-sc0000039-1510915933:681686..681865TCONS_00004147-exon-sc0000039-1510915933:681686..681865Clytia hemisphaericaexon
TCONS_00004147-exon-sc0000039-1510915933:681064..681494TCONS_00004147-exon-sc0000039-1510915933:681064..681494Clytia hemisphaericaexon
TCONS_00004147-exon-sc0000039-1491911889:682780..683007TCONS_00004147-exon-sc0000039-1491911889:682780..683007Clytia hemisphaericaexon
TCONS_00004147-exon-sc0000039-1491911889:681686..681865TCONS_00004147-exon-sc0000039-1491911889:681686..681865Clytia hemisphaericaexon
TCONS_00004147-exon-sc0000039-1491911889:681064..681494TCONS_00004147-exon-sc0000039-1491911889:681064..681494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:681064..683007 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
224.735	235.658	124.989	87.9587	0.451131	0.625735	0.101368	0.761191	0	0.794748	0.114107	0.337934	0.29849	0	0.0897901	0	0.163061	0.20951	0	0.112664	0	0	31.4816	49.1441	0.36277	0.0973399	1.17736	1.10009	41.0847	50.7218
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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