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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004136 ID=TCONS_00004136|Name=TCONS_00004136|organism=Clytia hemisphaerica|type=transcript|length=3741bp
CTAAGTATTTGCATCTTCGAACTATATCATCAACAAGCTGTCTCAAATCA
TCAGAATGCAAAATGACAGGTTTGGCCATCTTGCACTGGATGCTATATCT
AAACAGAAGCGTTTCCATTTCATGATCACCACCACTTATATCAAGCTGAA
TATAAGTTTCTTTGGCGTTTTCAAAATCACTCTTCATCTGTTCATGTTTT
TCGTATAAACAAGCTTGGATTTGATGTTCTCTACTGGAGATGTGTTCTCG
TGTTTTACCACCTTGGACATTACAAACGATACAGGTGTCATTCCGATCAA
AGTGTTCCTCAATGAAAGCCTCGACAGCTACTTCTTCTCGTCTCATCTTC
AGCATGAGTCGTTTGTGATGCCACTTTAGAAACCAATGGTGAATCATGAG
GCCAGCCCAATACTCGGTCATCTTCTGCAAAGCTGACTTTcgtttttctc
ttctcttttgaaCAAATGCTCGCCATTTGTCACAGATATCACGACTGATC
ATTCGCTGTCTGGCTTCTTCTTCTTTCTGACGTACTCGTAATGAGACTTG
CTGAGTGTTGTCTTCTGTTTCTTCATCGCTGGCGTCTCCTGTTTTGAAAT
AATCGTCTTCTGGGTCAAAGACTTCTTCTTCGTTTCCTTGAAGAGgtaat
tcttcaattttctctGGGTCAGCCTGTTTGGATGGTTCTGTTGATTTAAC
TTCTTCACCTCTCTTCATAATACGAAAAGTTGTTTGTTGGGCAGGTTGCT
TCTGATTGGCTGACGGTGCAAGAAGTGCACCAGGCATGATCAACCTCTGT
TTTGTACTATCCCACCAACACATTTGCAGCATGTCATTTCGATCCTTCAA
CAATTCTAAGAGTAGATTTTTCGCTTGTTGAAAATGGAGCACGCCACCAA
TTTGCTTGAAAATCTTGGATTGAGTTGTCTGCTGCTTGACATTAAGAAAC
TTTCGAAACAAGTAAACGATATCTTTACCGAAACCATCAATTCCTTGTTG
TAGGTTGGCCAGCACGACAAGATATAAGCATAACAAACGTGAGATCTTCA
ACATACTTTCATTGCTTTGCCTGTCTTCGAATAGAGAGAGCAAAGTTTTG
AATATGCCATCAGGATTAGTCAGCATCTCACAAAATTGCTTGATAAAAGA
TACAATTTTGTCccattcttcttttttctttcgtAGGTTTGCCACAGCTA
AGGAGGCTTTGTGGTTGTAAATGAAATCCCATTCTTCCATTTGCACAGCG
TATGAGCGTGGAACACAAAAAGAAAATGGGCGACCAGGTGGTTGAGTAGC
AGAAAAACTGGCGAAAAGTAGAATGATTGGAACTTCCAGCATATCACAGA
AGGTATCCACATTAGCATTGCttttcctcaaaactttaagAGTCGAGTAA
AAGAAATTCTTGACATGAGAATCATAATACAAGGTTTCAAGGCCTTGGTT
GTGGACTTTGAACACCTCTTGAATGGGCAGCCGGTCCATCCGTCGGTCGA
GACGTAACTCATCGATCAGGGGGTTGTTGGGGTCCATGAGGTAGGAGATG
TGGTTTAATCCGATGTAGAGGTTGATATCAACTTTTCGGTCATTGAGCCT
TTCACTCCATTCGTGACGCATGATCCCCTCCAAGCTTTTCTTTGCTACGT
GTGGAATGGTAGCCATTTGCTCACTGATTTGCGTCTTGATAATGTGATAA
AACGGTTTGTAACATTGAAGTAGTCTGTAAAGCATCCAGAGTTCTTCTGG
ACGTTTCGGTTGCATCCATTTAGAGTGAGGCTCAGTCATTTCTGAAGACA
ATTGCCGATAAGTGGTAGAGCAAACTCCACTGACAGAGAGGCTTCCCAGT
AAAGCTCTCAGTGCACGAACGAATGAGTCTGATGTAGGAGGTTCATGGAG
ACTGCGGCAATGTCGATCGGAACAGTGGTTGGGCACTTGACATATCATAT
TGGTGTTAACTTCTTGGGTGACAAGTTGGCGAAAGTTGAAAATAACTGCT
TTGAAGATAGACAGAAGAATCTTTGCTGCAATTTCCATTGCTTTCACCTT
GGTGATTTTTCCAGATGGTAAGGATGAAGGCATACTGCCAAGCTTGTAGT
AATACTTCAAGGAAGACTGTTCGAACACCAGATAATCTCGACCACTCCTA
CCAAATCCGATCTTTTCCAAGGTTTCGTTGACAAAAGTCTTGTCTGTGCA
AGCATTAGCTAGATTGGCGACCAAATCAAAGATGGATTGAACCAAACCAT
AGAACTTTTTATAAGATTCATACATGTTCTTGAAGACACCATTCCTGTTG
ACTTTATCGAAGGTAATCAGCAATTTGAAAACCACTAACTGCCCGACGGG
GTCTTTCTCAAACCCTTTGATCGCATCAAAAAGGTATTTGGCTTCTTTGG
TTAGAAAGGCGTAGCAGTAATAAGCTTCAGCTTTGAGTGAGAGACTCGTG
ACATCATTGATCAGGCTAAAAACTGATGCAAAGAGTTCGATCAATTCTTC
CTTTGCAACATCCAACGGTTTCAAAGTGTACTCTTTGAAAGCTAAGATAA
GATAACTTAACTTCTCATCAATGTTAACAGCAATTTTGGCAGCTTCAACA
TAGTTGTGTTGATCTTTGTACAATCTGGCTAATTGCTGCATCATTTTGTG
CTCTTGGTAAAGCTGCACCAAATCATCTAACATATCATCTCTGGATCGGA
GATACGAGATTTGGAAATTCAGTGTTCCAAACTTCAAGATTTGACGAATG
GTTTGAATATTGTTGGAATCTTCGTAGAACCTCAATGCTTTTGCCATCAA
TTCAGAACTGTCAACTTCGTTCAAGGAGTGTTGTTGTTGGTATTCCAACG
CTTCGATGAATTTGTTTTCAGACTTGAGGAGAGACATGACTGAACGATGG
TTGTTGTCTGCTTTGTAACATCGGATGGCATCTTCTTTCTTCCCTGCTTT
CTTGTACAGTCTAGCTGCATCTCCGAACTGGAAAAAAAGTACGATAGTAT
ACTACAATATTAAAGACTCGCTGTATAACTTAGTACTAAACAGCAGCAGT
TAATAAGATAAAATCTAGTTGAAATCGTAGGGAAACAAAAGCATAAACCT
AGAAAAAATACCTTGGATTGTTTTTCGTAGAGCAAAGCGAGAAAATCGTT
AGCATGTGCATTTTGTAATGACGTCACGGCATCTCCCACCAGACCACATT
TCAAGAATGACAAAGCACAGATTTTGAAACCGTTCAAGATGGTTGTTTTG
GCGATTTTCCCTTTCTTCGAATCCCAACCATCTTTAGCCTTACGGTAAGC
TAATTCGAATTTCAATTTGGCTTGACACTTCTCTCTCAATTGGTCATTAT
CAGCTTTTATAGCACACTTCATGGCAAGTTTCCAGAGGCCTTTGGTGAAG
AAATATTTGCCTTGTTTATCCCATTGTTCCTCAGAAGACTGCTCAGCGAA
ATGGTGATCACGAACAGCTCCATCTTCAAGTTTGGCAACATCCACCAACT
TTTTCTTAACTAGGAAATCAAACATAGGTGCTCTTTTCTTCTTATCTTCG
TCAAAGATCCAAACATTAACACGAGCTCTGGTGACAGCAGTGTATAACTT
CTTGAGCTCGGAATTCAATAGCTTGTGTTTGTTGTAGTCAAAGTCCAGTG
GACGTGATGAGTAATCAACATCGTTCGGAATGACTTGTAAACTTGAATCA
CTTTCAGTGACATCTACTTCGATTTCGTTGGATTTGGATGC Run BLAST on NCBI transcript from alignment at sc0000039:572300..578365- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004136 ID=TCONS_00004136|Name=TCONS_00004136|organism=Clytia hemisphaerica|type=transcript|length=6066bp|location=Sequence derived from alignment at sc0000039:572300..578365- (Clytia hemisphaerica)
CTAAGTATTTGCATCTTCGAACTATATCATCAACAAGCTGTCTCAAATCA
TCAGAATGCAAAATGACAGGTTTGGCCATCTTGCACTGGATGCTATATCT
AAACAGAAGCGTTTCCATTTCATGATCACCACCACTTATATCAAGCTGAA
TATAAGTTTCTTTGGCGTTTTCAAAATCACTCTTCATCTGTTCATGTTTT
TCGTATAAACAAGCTTGGATTTGATGTTCTCTACTGGAGATGTGTTCTCG
TGTTTTACCACCTTGGACATTACAAACGATACAGGTGTCATTACGATCAA
AGTGTTCCTCAATGAAAGCCTCGACAGCTACTTCTTCTCGTCTCATCTTC
AGCATGAGTCGTTTGTGATGCCACTTTAGAAACCAATGGTGAATCATGAG
GCCAGCCCAATACTTGGTCATCTTCTGCAAAGCTGACTTTCGTTTTTCTC
TTCTCTTTTGAACAAATGCTCGCCATTTGTCACAGATATCACGACTGATC
ATTCGCTGTCTGGCTTCTTCTTCTTTCTGACGTACTCGTAATGAGACTTG
CTGAGTGTTGTCTTCTGTTTCTTCATCGCTGGCGTCTCCTGTTTTGAAAT
AATCGTCTTCTGGGTCAAAGACTTCTTCTTCGTTTCCTTGAAGAGGTAAT
TCTTCAATTTTCTCTGGGTCAGCCTGTTTGGATGGTTCTGTTGATTTAAC
TTCTTCACCTCTCTTCATAATGCGAAAAGTTGTTTGTTGGGCAGGTTGCT
TCTGATTGGCTGACGGTGCAAGAAGTGCACCAGGCATGATCAACCTCAGT
TTTGTACTATCCCACCAACACANGTTGCTTCTGATTGGCTGACGGTGCAA
GAAGTGCACCAGGCATGATCAACCTCTGTTTTGTACTATCCCACCAACAC
ATTTGCAGCATGTCATTTCGATCCTTCAACAATTCTAAGAGTAGATTTTT
CGCTTGTTGAAAATGGAGCACGCCACCAATTTGCTTGAAAATCTTGGATT
GAGTTGTCTGCTGCTTGACATTAAGAAACTTTCGAAACAAGTAAACGATA
TCTTTACCGAAACCATCAATTCCTTGTTGTAGGTTGGCCAGCACGACAAG
ATATAAGCATAACAAACGTGAGATCTTCAACATACTTTCATTGCTTTGCC
TGTCTTCGAATAGAGAGAGCAAAGTTTTGAATATGCCATCAGGATTAGTC
AGCATCTCACAAAATTGCTTGATAAAAGATACAATTTTGTCCCATTCTTC
TTTTTTCTTTCGTAGGTTTGNTAGTGTTAAAACGATCTAAACATCTAATC
ATTATTTACATAAAAACATTCACAATATACATATAATATATAATCAAGCA
ATCCTTAAAATATCAGAATCATACAATGTTCTCATATAGAAATATCTTTT
CTTAAATACCAAATCTTTTTGAGTCTATACAATGCGGTAACCGATTACAA
CTCAAAGAACACAAAACTTATGATCAAAATCAAAACAAAAACCGTGAATG
ACTAAAAAGAACGAAATCAAAAAGTGTGATGTGGTGTGACCAAAATGGAC
AAAAAATCGACAAAAAAATCTTTAAAAACATATTAAAATAAAGACGAAAA
AAGATCTTAAAAAGCTAAAAAACATGAAAAGTAAAATTAAAAAACTGCTG
CAAATCAACACCATCTGAATATGATTAAAAAACCAATGGGGAAATTTGGT
TTCATCGCCAAAATCTACAGATTCTCAAAGAATCACCCAAAGCATCAAAA
ACAATCAAATGTGAATGAGATGAGAATCACCATATCGTTCCAATTAAAAA
AAAACAAGAAAAAATTTGACCATCCATGCTTAATGATCGTTTAAAACGGT
ACAGTAATCGGGGAAAACCAAGGATTAGCACAGTAATTTCTCCACCAAAT
ATGCAAAATAACTGTTTATCATACCATACACCAAGTTCAACGTCGTTTGT
TTTGAGATTTGGAGGCTTTCAAATTCTTCTTCTTACGACTTTCAATGTTG
GTGAACTCGTTTTCTTCTTCGTGTAATTTTCGCTCTTCTTCCATTTCTGA
AATAAGGACGGTCATCAAAATTAACATTTTTTTAGACGGCCGGTATGACA
GGACGACGGTAAATTAAAAATTTCTACTTAAGGATTAAAGAAGCAATTAT
TGACGTCAAAAGAAGGCATGACTTTAAAAAGTCAACATTTTGCAGACTCT
GGTTATAAGCGATAAATTCGGTCTTAGAGTAGAGGATATAGATAAAGCGA
GCTCTCGTTAGAATTTTAAAACAACGGTGAAACAAAACCAGGAAGCACTG
ACATTGAAATTTAGTTCTCACTCACCTAAGTATTTGCATCTTCGAACTAT
ATCATCAACAAGCTGTCTCAAATCATCAGAATGCAAAATGACAGGTTTGG
CCATCTTGCACTGGATGCTATATCTAAACAGAAGCGTTTCCATTTCATGA
TCACCACCACTTATATCAAGCTGAATATAAGTTTCTTTGGCGTTTTCAAA
ATCACTCTTCATCTGTTCATGTTTTTCGTATAAACAAGCTTGGATTTGAT
GTTCTCTACTGGAGATGTGTTCTCGTGTTTTACCCCCTTGGACATTACAA
ACGATACAGGTGTCATTCCGATCAAAGTGTTCCTCAATGAAAGCCTCGAC
AGCTACTTCTTCTCGTCTCATCTTCAGCATGAGTCGTTTGTGATGCCACT
TTAGAAACCAATGGTGAATCATGAGGCCAGCCCAATACTCGGTCATCTTC
TGCAAAGCTGACTTTCGTTTTTCTCTTCTCTTTTGAACAAATGCTCGCCA
TTTGTCACAGATATCACGACTGATCATTCGCTGTCTGGCTTCTTCTTCTT
TCTGACGTACTCGTAATGAGACTTGCTGAGTGTTGTCTTCTGTTTCTTCA
TCGCTGGCGTCTCCTGTTTTGAAATAATCGTCTTCTGGGTCAAAGACTTC
TTCTTCGTTTCCTTGAAGAGGTAATTCTTCAATTTTCTCTGGGTCAGCCT
GTTTGGATGGTTCTGTTGATTTAACTTCTTCACCTCTCTTCATAATACGA
AAAGTTGTTTGTTGGGCAGGTTGCTTCTGATTGGCTGACGGTGCAAGAAG
TGCACCAGGCATGATCAACCTCTGTTTTGTACTATCCCACCAACACATTT
GCAGCATGTCATTTCGATCCTTCAACAATTCTAAGAGTAGATTTTTCGCT
TGTTGAAAATGGAGCACGCCACCAATTTGCTTGAAAATCTTGGATTGAGT
TGTCTGCTGCTTGACATTAAGAAACTTTCGAAACAAGTAAACGATATCTT
TACCGAAACCATCAATTCCTTGTTGTAGGTTGGCCAGCACGACAAGATAT
AAGCATAACAAACGTGAGATCTTCAACATACTTTCATTGCTTTGCCTGTC
TTCGAATAGAGAGAGCAAAGTTTTGAATATGCCATCAGGATTAGTCAGCA
TCTCACAAAATTGCTTGATAAAAGATACAATTTTGTCCCATTCTTCTTTT
TTCTTTCGTAGGTTTGCCACAGCTAAGGAGGCTTTGTGGTTGTAAATGAA
ATCCCATTCTTCCATTTGCACAGCGTATGAGCGTGGAACACAAAAAGAAA
ATGGGCGACCAGGTGGTTGAGTAGCAGAAAAACTGGCGAAAAGTAGAATG
ATTGGAACTTCCAGCATATCACAGAAGGTATCCACATTAGCATTGCTTTT
CCTCAAAACTTTAAGAGTCGAGTAAAAGAAATTCTTGACATGAGAATCAT
AATACAAGGTTTCAAGGCCTTGGTTGTGGACTTTGAACACCTCTTGAATG
GGCAGCCGGTCCATCCGTCGGTCGAGACGTAACTCATCGATCAGGGGGTT
GTTGGGGTCCATGAGGTAGGAGATGTGGTTTAATCCGATGTAGAGGTTGA
TATCAACTTTTCGGTCATTGAGCCTTTCACTCCATTCGTGACGCATGATC
CCCTCCAAGCTTTTCTTTGCTACGTGTGGAATGGTAGCCATTTGCTCACT
GATTTGCGTCTTGATAATGTGATAAAACGGTTTGTAACATTGAAGTAGTC
TGTAAAGCATCCAGAGTTCTTCTGGACGTTTCGGTTGCATCCATTTAGAG
TGAGGCTCAGTCATTTCTGAAGACAATTGCCGATAAGTGGTAGAGCAAAC
TCCACTGACAGAGAGGCTTCCCAGTAAAGCTCTCAGTGCACGAACGAATG
AGTCTGATGTAGGAGGTTCATGGAGACTGCGGCAATGTCGATCGGAACAG
TGGTTGGGCACTTGACATATCATATTGGTGTTAACTTCTTGGGTGACAAG
TTGGCGAAAGTTGAAAATAACTGCTTTGAAGATAGACAGAAGAATCTTTG
CTGCAATTTCCATTGCTTTCACCTTGGTGATTTTTCCAGATGGTAAGGAT
GAAGGCATACTGCCAAGCTTGTAGTAATACTTCAAGGAAGACTGTTCGAA
CACCAGATAATCTCGACCACTCCTACCAAATCCGATCTTTTCCAAGGTTT
CGTTGACAAAAGTCTTGTCTGTGCAAGCATTAGCTAGATTGGCGACCAAA
TCAAAGATGGATTGAACCAAACCATAGAACTTTTTATAAGATTCATACAT
GTTCTTGAAGACACCATTCCTGTTGACTTTATCGAAGGTAATCAGCAATT
TGAAAACCACTAACTGCCCGACGGGGTCTTTCTCAAACCCTTTGATCGCA
TCAAAAAGGTATTTGGCTTCTTTGGTTAGAAAGGCGTAGCAGTAATAAGC
TTCAGCTTTGAGTGAGAGACTCGTGACATCATTGATCAGGCTAAAAACTG
ATGCAAAGAGTTCGATCAATTCTTCCTTTGCAACATCCAACGGTTTCAAA
GTGTACTCTTTGAAAGCTAAGATAAGATAACTTAACTTCTCATCAATGTT
AACAGCAATTTTGGCAGCTTCAACATAGTTGTGTTGATCTTTGTACAATC
TGGCTAATTGCTGCATCATTTTGTGCTCTTGGTAAAGCTGCACCAAATCA
TCTAACATATCATCTCTGGATCGGAGATACGAGATTTGGAAATTCAGTGT
TCCAAACTTCAAGATTTGACGAATGGTTTGAATATTGTTGGAATCTTCGT
AGAACCTCAATGCTTTTGCCATCAATTCAGAACTGTCAACTTCGTTCAAG
GAGTGTTGTTGTTGGTATTCCAACGCTTCGATGAATTTGTTTTCAGACTT
GAGGAGAGACATGACTGAACGATGGTTGTTGTCTGCTTTGTAACATCGGA
TGGCATCTTCTTTCTTCCCTGCTTTCTTGTACAGTCTAGCTGCATCTCCG
AACTGGAAAAAAAGTACGATAGTATACTACAATATTAAAGACTCGCTGTA
TAACTTAGTACTAAACAGCAGCAGTTAATAAGATAAAATCTAGTTGAAAT
CGTAGGGAAACAAAAGCATAAACCTAGAAAAAATACCTTGGATTGTTTTT
CGTAGAGCAAAGCGAGAAAATCGTTAGCATGTGCATTTTGTAATGACGTC
ACGGCATCTCCCACCAGACCACATTTCAAGAATGACAAAGCACAGATTTT
GAAACCGTTCAAGATGGTTGTTTTGGCGATTTTCCCTTTCTTCGAATCCC
AACCATCTTTAGCCTTACGGTAAGCTAATTCGAATTTCAATTTGGCTTGA
CACTTCTCTCTCAATTGGTCATTATCAGCTTTTATAGCACACTTCATGGC
AAGTTTCCAGAGGCCTTTGGTGAAGAAATATTTGCCTTGTTTATCCCATT
GTTCCTCAGAAGACTGCTCAGCGAAATGGTGATCACGAACAGCTCCATCT
TCAAGTTTGGCAACATCCACCAACTTTTTCTTAACTAGGAAATCAAACAT
AGGTGCTCTTTTCTTCTTATCTTCGTCAAAGATCCAAACATTAACACGAG
CTCTGGTGACAGCAGTGTATAACTTCTTGAGCTCGGAATTCAATAGCTTG
TGTTTGTTGTAGTCAAAGTCCAGTGGACGTGATGAGTAATCAACATCGTT
CGGAATGACTTGTAAACTTGAATCACTTTCAGTGACATCTACTTCGATTT
CGTTGGATTTGGATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004136-exon-sc0000039-1575043694:578082..578365 | TCONS_00004136-exon-sc0000039-1575043694:578082..578365 | Clytia hemisphaerica | exon |
| TCONS_00004136-exon-sc0000039-1575043694:572300..575756 | TCONS_00004136-exon-sc0000039-1575043694:572300..575756 | Clytia hemisphaerica | exon |
| TCONS_00004136-exon-sc0000039-1510915933:578082..578365 | TCONS_00004136-exon-sc0000039-1510915933:578082..578365 | Clytia hemisphaerica | exon |
| TCONS_00004136-exon-sc0000039-1510915933:572300..575756 | TCONS_00004136-exon-sc0000039-1510915933:572300..575756 | Clytia hemisphaerica | exon |
| TCONS_00004136-exon-sc0000039-1491911889:578082..578365 | TCONS_00004136-exon-sc0000039-1491911889:578082..578365 | Clytia hemisphaerica | exon |
| TCONS_00004136-exon-sc0000039-1491911889:572300..575756 | TCONS_00004136-exon-sc0000039-1491911889:572300..575756 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:572300..578365 - |
Blast
BLAST of TCONS_00004136 vs. Swiss-Prot (Human)
Match: TRNK1 (TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1 PE=2 SV=4) HSP 1 Score: 87.0409 bits (214), Expect = 6.742e-17 Identity = 51/121 (42.15%), Postives = 70/121 (57.85%), Query Frame = -1
Query: 3364 VDVTESDSSLQVIPNDVDYSS--RPLDFDYNKHKLLNSELKKLYTAVTRARVNVWIFDEDKKKRAPMFD-FXXXXXXXXXXXLEDGAVRDHHFAEQSSEEQWDKQGKYFFTKGLWKLAMKC 3717
D E + L +P D SS R L + +KLLN ELK+LYTA+TRARVN+WIFDE+++KRAP F F+ + + V E+ D F + S+ +W QG Y+ WK+A KC
Sbjct: 1601 TDSREENRPLVEVPLDKPGSSQGRSLMVNPEMYKLLNGELKQLYTAITRARVNLWIFDENREKRAPAFKYFIRRDFVQVVKTDENKDFDDSMFVKTSTPAEWIAQGDYYAKHQCWKVAAKC 1721
The following BLAST results are available for this feature:
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