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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004133 ID=TCONS_00004133|Name=TCONS_00004133|organism=Clytia hemisphaerica|type=transcript|length=2649bpRun BLAST on NCBI protein sequence of TCONS_00004133-protein >TCONS_00004133-protein ID=TCONS_00004133-protein|Name=TCONS_00004133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=842bp QVYGVRTSSRSVNIFSTIAGLIGLMRDFYKGIEKEHLYPYLPEFLSTCSQRun BLAST on NCBI transcript from alignment at sc0000039:511016..533918- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004133 ID=TCONS_00004133|Name=TCONS_00004133|organism=Clytia hemisphaerica|type=transcript|length=22903bp|location=Sequence derived from alignment at sc0000039:511016..533918- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000039:511016..533918- >TCONS_00004133 ID=TCONS_00004133|Name=TCONS_00004133|organism=Clytia hemisphaerica|type=CDS|length=58167bp|location=Sequence derived from alignment at sc0000039:511016..533918- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004133 vs. Swiss-Prot (Human)
Match: IPO9 (Importin-9 OS=Homo sapiens GN=IPO9 PE=1 SV=3) HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0 Identity = 316/733 (43.11%), Postives = 484/733 (66.03%), Query Frame = 1
Query: 1 QVYGVRTSSRSVNIFSTIAGLIGLMRDFYKGIEKEHLYPYLPEFLSTCSQQLALPDGPSSDCGIKMEILKALEVLVKHFPKYMLQHITSILPPVWAIFTQSVDHYIKTTINCIDSTDDVVDEDGEILSFENLVYSTFEFIVALVESSKFKKTVQQYLEEILFFTMVYMQITDEQVDLWSNDPNQFVEDEDEETLSYSVRISAQFLILTLCQRFK-EAPQKLFNAVGRLKLKGDELRTQGDEHWWKYYEVILLCLGYVQQSILEKVETGELKDDFKNSVKEMLVTACSTEAGSAFLVGQSFWTSSKLAAILDDQSISHFLQATVGALGEGQNTVLRVFAVKSLYGFCDYLRDSNKTNLLHPFLEQIAAGILSMATQFSESVLALTLETLMIVIKVNLEFTSTLVQNSQLIPLINALYLKYATDHHLEPIIEDLLGDLAEIPTCYAVIMEKIVPTLLSILEAPEDKVPPVMVAPTIDVLTVLIRKGPKPIQQSFILNTFPLVSKKALQSDDEGIIQNCGECIRAFIACSAEEVFSWQDGSGHNGLYYIVQVTCKLLDPKASESSAMFIGKLINTLVIKGGNVLGDNLEIILRSVLSKLQQAKTFSVIQSLLMVFIQLIRYQIEATLEFLSTVPGPTGKSALDYVLTEWCSKQDSFFGNYETKVSYDALCKLLLHAVTTGDSRFEEIVVPDQQMNDTQE-IMTRSKAKQAKTQTTFIPVGIKLFKLVVNEMMLQME 2193
+VYG+RT SR+V IF+T A +I M + KG K ++P + +F Q L +PDGP+SD G KME+LKA+ LVK+FPK+M+ + ILP VW T+S Y++T +N + +D VD DGE+L FENLV+S FEF+ AL+E+SKFK TV++ L E++++ ++YMQIT+EQ+ +W+ +P QFVEDED++T SY+VRI+AQ L+L + F+ E+ L A R + ++ + G EHWWK +E +L LG V+ I + V+ G + D + +++ + S FL+G++ W +S+ + + I FLQATV L E Q +R+ AV++++G+CD L+ S T++L PFL I G++ +A QFS VL L +ETL IV V+ EFT+++ S++ P A++LKY+ D + + +D+ +L++I C + +++PTL+SI++AP DK+P + A ID+LT ++R P+ Q I FP V++ L +DD +QN GEC+RA+++ + E+V W D GHNGL+Y++QV +LLDP+ SE +A F+G+L++TL+ K G LG+NL+ ILR++LSK+QQA+T SV+QSL+MVF L+ Q+E LEFL ++PGPTGK AL++V+ EW S+Q F+G YE KVS ALCKLL H + D R ++I V +++ E I TRSK+ + + T IP+ +K+ KL++NE+ ME
Sbjct: 201 EVYGIRTRSRAVEIFTTCAHMICNMEELEKGAAKVLIFPVVQQFTEAFVQALQIPDGPTSDSGFKMEVLKAVTALVKNFPKHMVSSMQQILPIVWNTLTESAAFYVRTEVNYTEEVEDPVDSDGEVLGFENLVFSIFEFVHALLENSKFKSTVKKALPELIYYIILYMQITEEQIKVWTANPQQFVEDEDDDTFSYTVRIAAQDLLLAVATDFQNESAAALAAAATRHLQEAEQTKNSGTEHWWKIHEACMLALGSVKAIITDSVKNGRIHFDMHGFLTNVILADLNLSV-SPFLLGRALWAASRFTVAMSPELIQQFLQATVSGLHETQPPSVRISAVRAIWGYCDQLKVSESTHVLQPFLPSILDGLIHLAAQFSSEVLNLVMETLCIVCTVDPEFTASM--ESKICPFTIAIFLKYSNDPVVASLAQDIFKELSQIEACQGPMQMRLIPTLVSIMQAPADKIPAGLCATAIDILTTVVRNTKPPLSQLLICQAFPAVAQCTLHTDDNATMQNGGECLRAYVSVTLEQVAQWHDEQGHNGLWYVMQVVSQLLDPRTSEFTAAFVGRLVSTLISKAGRELGENLDQILRAILSKMQQAETLSVMQSLIMVFAHLVHTQLEPLLEFLCSLPGPTGKPALEFVMAEWTSRQHLFYGQYEGKVSSVALCKLLQHGINADDKRLQDIRVKGEEIYSMDEGIRTRSKSAKNPERWTNIPLLVKILKLIINELSNVME 930 The following BLAST results are available for this feature:
BLAST of TCONS_00004133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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