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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004113 ID=TCONS_00004113|Name=TCONS_00004113|organism=Clytia hemisphaerica|type=transcript|length=2573bpRun BLAST on NCBI transcript from alignment at sc0000039:337250..362437- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004113 ID=TCONS_00004113|Name=TCONS_00004113|organism=Clytia hemisphaerica|type=transcript|length=25188bp|location=Sequence derived from alignment at sc0000039:337250..362437- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004113 vs. Swiss-Prot (Human)
Match: SYSC (Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3) HSP 1 Score: 647.892 bits (1670), Expect = 0.000e+0 Identity = 318/482 (65.98%), Postives = 380/482 (78.84%), Query Frame = 1
Query: 91 MVLDLELFRADKGGCPDKIKENQSKRFKDVKLVDTVIECDGKWRKLRFQADNWNKLINLCSKTIGKKMKNKEPVGDSDAIPDTLTTAEQLQEIKPETLEQLTVRQIKKLRTMIDDNMKKCVAERVECEKVRHSNLFEVGNWLHESVVVSKDE-AENEIVRTWGDVSQRKKYSHFDLLVMIDGVDYERGASVSGNRGYFLKGAGVLLQQALKNLAVQILLKKGFTPLYTPFFMKKEVMQEVAQLSQFDDELYKVIGKGSEKEDDKSVSENYLIATSEQPIAAYHRGEWMDTAELPKKYAGVSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVICSPHDNQSWELLDEMVNNAEEFYQALNIPYQIVGIVSGXXXXXXXXXXDLEAWFPGSGAFRELCSCSNCTDYQSRRLLVRYGQTKKMNDKAEFCHMLNATMCATTRVICCILENNQTEDGIVVPALLRPFM--GNMDFIKFVKPAPIDEQ 1527
MVLDL+LFR DKGG P I+E Q KRFKD LVD +++ D +WR+ RF+ADN NKL NLCSKTIG+KMK KEPVGD +++P+ + + ++ + L L V QIKK+R +ID+ + KC AER++ E R NL E+GN LH SV +S DE +N++ R WGD + RKKYSH DL+VM+DG + E+GA V+G+RGYFLKG V L+QAL A++ L +G+ P+YTPFFM+KEVMQEVAQLSQFD+ELYKVIGKGSEK DD S E YLIATSEQPIAA HR EW+ +LP KYAG+STCFRQEVGSHGRDTRGIFRVHQFEKIEQFV SPHDN+SWE+ +EM+ AEEFYQ+L IPY IV IVSG+LN+AA+KKLDLEAWFPGSGAFREL SCSNCTDYQ+RRL +RYGQTKKM DK EF HMLNATMCATTR IC ILEN QTE GI VP L+ FM G + I FVKPAPI+++
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLS---FDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQE 479 The following BLAST results are available for this feature:
BLAST of TCONS_00004113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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