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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004112 ID=TCONS_00004112|Name=TCONS_00004112|organism=Clytia hemisphaerica|type=transcript|length=2204bpRun BLAST on NCBI protein sequence of TCONS_00004112-protein >TCONS_00004112-protein ID=TCONS_00004112-protein|Name=TCONS_00004112-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp LIVPTLHHLMLTKNLGVLHQLHQITQRSLNFLRYNQTRNLQRSTISMVLDRun BLAST on NCBI transcript from alignment at sc0000039:337250..357640- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004112 ID=TCONS_00004112|Name=TCONS_00004112|organism=Clytia hemisphaerica|type=transcript|length=20391bp|location=Sequence derived from alignment at sc0000039:337250..357640- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000039:337250..357640- >TCONS_00004112 ID=TCONS_00004112|Name=TCONS_00004112|organism=Clytia hemisphaerica|type=CDS|length=16620bp|location=Sequence derived from alignment at sc0000039:337250..357640- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004112 vs. Swiss-Prot (Human)
Match: SYSC (Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3) HSP 1 Score: 648.662 bits (1672), Expect = 0.000e+0 Identity = 318/482 (65.98%), Postives = 380/482 (78.84%), Query Frame = 3
Query: 141 MVLDLELFRADKGGCPDKIKENQSKRFKDVKLVDTVIECDGKWRKLRFQADNWNKLINLCSKTIGKKMKNKEPVGDSDAIPDTLTTAEQLQEIKPETLEQLTVRQIKKLRTMIDDNMKKCVAERVECEKVRHSNLFEVGNWLHESVVVSKDE-AENEIVRTWGDVSQRKKYSHFDLLVMIDGVDYERGASVSGNRGYFLKGAGVLLQQALKNLAVQILLKKGFTPLYTPFFMKKEVMQEVAQLSQFDDELYKVIGKGSEKEDDKSVSENYLIATSEQPIAAYHRGEWMDTAELPKKYAGVSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVICSPHDNQSWELLDEMVNNAEEFYQALNIPYQIVGIVSGXXXXXXXXXXDLEAWFPGSGAFRELCSCSNCTDYQSRRLLVRYGQTKKMNDKAEFCHMLNATMCATTRVICCILENNQTEDGIVVPALLRPFM--GNMDFIKFVKPAPIDEQ 1577
MVLDL+LFR DKGG P I+E Q KRFKD LVD +++ D +WR+ RF+ADN NKL NLCSKTIG+KMK KEPVGD +++P+ + + ++ + L L V QIKK+R +ID+ + KC AER++ E R NL E+GN LH SV +S DE +N++ R WGD + RKKYSH DL+VM+DG + E+GA V+G+RGYFLKG V L+QAL A++ L +G+ P+YTPFFM+KEVMQEVAQLSQFD+ELYKVIGKGSEK DD S E YLIATSEQPIAA HR EW+ +LP KYAG+STCFRQEVGSHGRDTRGIFRVHQFEKIEQFV SPHDN+SWE+ +EM+ AEEFYQ+L IPY IV IVSG+LN+AA+KKLDLEAWFPGSGAFREL SCSNCTDYQ+RRL +RYGQTKKM DK EF HMLNATMCATTR IC ILEN QTE GI VP L+ FM G + I FVKPAPI+++
Sbjct: 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLS---FDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKPAPIEQE 479 The following BLAST results are available for this feature:
BLAST of TCONS_00004112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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