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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004111 ID=TCONS_00004111|Name=TCONS_00004111|organism=Clytia hemisphaerica|type=transcript|length=1602bp
CCAAATAAATTAGCAAACATTTTCGAAATATGTCCTTATATAAATAATTC
TTCCATAAATTctaccaaaaaataaatataattttgtaCTCTATGTATCT
ACTAAAGTTACTCtaaaaaaccacaaaaatttgaaaaaaccacaaaaatt
tgaaaaatccatgttcttaaaatttacGATTAAATAAGTGGCAAAGTAGT
CCAGCCACTTTGTAACTACAATTTCTCAGTTCATTGTACTGTTCAAATAT
TCAATTGTTCACCCGATCCAAATAACTGAAAAGCTAAGAAACCTGAGAAT
GAGACAAACGCAGTTAGCGCATACACTGAAAACCAATGCCCAGTTGTTTC
CAAGATGTATCCTGTCACATAAACACCCATTATTCCCGCCAAGGCCGCCA
CACTATTGATCAAGCCATGAAGGGCACCCGCGTGCTGGGGGCATAAATCT
TGTGAATTCAAATTGATGGAGCAGCTAGCGAATGCCTGTATACCAATATT
CAAGCTCATTACAAATAAAGCTTGTTTGAAAGTTTCGACGACTGTCAATA
ACACAGAAAATAACGTTCCACCCAGAAAAAATATAGCGGAATAGGATTTT
CTCAATGCTGTGACAGATGTACCGCTACTAAGTAGCACGTTTGCATAATA
ACTAGAGACGTTAGTGATGATGAAATTAACCACCCATGGTATAACATTAA
ACACCCATCCTTTGCTTTGTGGAAAAACATCGTGGAAATAAATAGGTGTC
CAAGATAGGAGGTTGAAGAATACAAACCCACTGCAAAAATAAGCGATCAC
CAGCCCCCAGAATGGTTTCCTTGAAGCCATCTTCCTCCACGGTACtggct
ctttcatttttataaatttcttttccTTTGTATTCTTGAATTTCGCTGTA
CTGTTGTATAAACGCCTCATCCAATACACCCATAAAAGGGCGGGAATACC
AATAACGATAAAAACCATCTCCCAATCGAACATTTCAATGATAAGAGAAC
CAACGAAACCCGTCATAATTGTCCCTACGGAGGATCCAGAATAAGAAAAC
CCGGAAACAAACCCCTTCTCCTTAACGGGGACATGTTTAGCAAAAATAGT
CGCCTGTGATGGAAAGTAAAATCCTTGAGCCATTCCAGTGAAAAAGCGGG
TTCCAAAAATCGCAAATGTTCCAGAGTATAGAAAGGCTGGGTTTTCAGCA
ACAAAAGGAAGGATGAGGGTGCAGGCCGACCATACGGTAGCCGAATGAAT
AATCATCCGCTCTCCCCCATGTCGGTCCGCAAGATATCCGCCGATGATAT
TTGTTGAAACGTAACCACAGAAAAAAGCGGAAAGAGCCATTCCTGATGTT
TGTTTACTCCAACCCATTTCTTTGGCGATGGCTGGAACACAAATCGACAT
AGCAGATCGAACGCAATAGacgaaaaatgttccaataaaaTAAGTAATAG
TCCATCGCAAACGTAGCGGTTTACTCCAGTGTAAATCAGTGTTTTCTCCG
TGTAATTTTTCATTGTTCAATTTGTTTTTACCACTTGGATCTTCTTCGAT
ATTAAGGTTGGTTTGTTTATTCTTCATCTCATTTTATTATATTGCACTAA
ac Run BLAST on NCBI transcript from alignment at sc0000039:322127..323809- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004111 ID=TCONS_00004111|Name=TCONS_00004111|organism=Clytia hemisphaerica|type=transcript|length=1683bp|location=Sequence derived from alignment at sc0000039:322127..323809- (Clytia hemisphaerica)
CCAAATAAATTAGCAAACATTTTCGAAATATGTCCTTATATAAATAATTC
TTCCATAAATTCTACCAAAAAATAAATATAATTTTGTACTCTATGTATCT
ACTAAAGTTACTCTAAAAAACCACAAAAATTTGAAAAAACCACAAAAATT
TGAAAAATCCATGTTCTTAAAATTTACGATTAAATAAGTGGCAAAGTAGT
CCAGCCACTTTGTAACTACAATTTCTCAGTTCATTGTACTGTTCAAATAT
TCAATTGTTCACCCGATCCAAATAACTGAAAAGCTAAGAAACCTGAGAAT
GAGACAAACGCAGTTAGCGCATACACTGAAAACCAATGCCCAGTTGTTTC
CAAGATGTATCCTGTCACATAAACACCCATTATTCCCGCCAAGGCCGCCA
CACTATTGATCAAGCCATGAAGGGCACCCGCGTGCTGGGGGCATAAATCT
TGTGAATTCAAATTGATGGAGCAGCTAGCGAATGCCTGTATACCAATATT
CAAGCTCATTACAAATAAAGCTTGTTTGAAAGTTTCGACGACTGTCAATA
ACACAGAAAATAACGTTCCACCCAGAAAAAATATAGCGGAATAGGATTTT
CTCAATGCTGTGACAGATGTACCGCTACTAAGTAGCACGTTTGCATAATA
ACTAGAGACGTTAGTGATGATGAAATTAACCACCCATGGTATAACATTAA
ACACCCATCCTTTGCTTTGTGGAAAAACATCGTGGAAATAAATAGGTGTC
CAAGATAGGAGGTTGAAGAATACAAACCCACTGCAAAAATAAGCGATCAC
CAGCCCCCAGAATGGTTTCCTTGAAGCCATCTTCCTCCACGGTACTGGCT
CTTTCATTTTTATAAATTTCTTTTCCTTTGTATTCTTGAATTTCGCTGTA
CTGTTGTATAAACGCCTCATCCAATACACCCATAAAAGGGCGGGAATACC
AATAACGATAAAAACCATCTCCCAATCGAACATTTCAATGATAAGAGAAC
CAACGAAACCCGTCATAATTGTCCCTACGGAGGATCCAGAATAAGAAAAC
CCGGAAACAAACCCCTTCTCCTTAACGGGGACATGTTTAGCAAAAATAGT
CGCCTGTGATGGAAAGTAAAATCCTTGAGCCATTCCAGTGAAAAAGCGGG
TTCCAAAAATCGCAAATGTTCCAGAGTATAGAAAGGCTGGGTTTTCAGCA
ACAAAAGGAAGGATGAGGGTGCAGGCCGACCATACGGTAGCCGAATGAAT
AATCATCCGCTCTCCCCCATGTCGGTCCGCAAGATATCCGCCGATGATAT
TTGTTGAAACATAACCGNTAGCCGAATAAATAATCATCCGCTCTCCCCCA
TGGCGGTCCGCAAGATATCCACCGATGATATTTGTTGAAACGTAACCACA
GAAAAAAGCGGAAAGAGCCATTCCTGATGTTTGTTTACTCCAACCCATTT
CTTTGGCGATGGCTGGAACACAAATCGACATAGCAGATCGAACGCAATAG
ACGAAAAATGTTCCAATAAAATAAGTAATAGTCCATCGCAAACGTAGCGG
TTTACTCCAGTGTAAATCAGTGTTTTCTCCGTGTAATTTTTCATTGTTCA
ATTTGTTTTTACCACTTGGATCTTCTTCGATATTAAGGTTGGTTTGTTTA
TTCTTCATCTCATTTTATTATATTGCACTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004111-exon-sc0000039-1575043694:322500..323809 | TCONS_00004111-exon-sc0000039-1575043694:322500..323809 | Clytia hemisphaerica | exon |
| TCONS_00004111-exon-sc0000039-1575043694:322127..322418 | TCONS_00004111-exon-sc0000039-1575043694:322127..322418 | Clytia hemisphaerica | exon |
| TCONS_00004111-exon-sc0000039-1510915933:322500..323809 | TCONS_00004111-exon-sc0000039-1510915933:322500..323809 | Clytia hemisphaerica | exon |
| TCONS_00004111-exon-sc0000039-1510915933:322127..322418 | TCONS_00004111-exon-sc0000039-1510915933:322127..322418 | Clytia hemisphaerica | exon |
| TCONS_00004111-exon-sc0000039-1491911889:322500..323809 | TCONS_00004111-exon-sc0000039-1491911889:322500..323809 | Clytia hemisphaerica | exon |
| TCONS_00004111-exon-sc0000039-1491911889:322127..322418 | TCONS_00004111-exon-sc0000039-1491911889:322127..322418 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:322127..323809 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00004111 vs. Swiss-Prot (Human)
Match: S17A9 (Solute carrier family 17 member 9 OS=Homo sapiens GN=SLC17A9 PE=1 SV=2) HSP 1 Score: 258.455 bits (659), Expect = 3.503e-79 Identity = 146/428 (34.11%), Postives = 239/428 (55.84%), Query Frame = -2
Query: 246 NEKLHGENTDLHWSKPLRLRWTITYFIGTFFVYCVRSAMSICVPAIAKEMGWSKQTSGMALSAFFCGYVSTNIIGGYLADRHGGERMIIHSATVWSACTLILPFVAE-NPAFLYSGTFAIFGTRFFTGMAQGFYFPSQATIFAKHVPVKEKXXXXXXXXXXXXXGTIMTGFVGSLIIEMFDWEMVFIVIGIPALLWVYWMRRLYNSTAXXXXXXXXXXXXXXEP----VPWRKMASRKPFWGLVIAYFCSGFVFFNLLSWTPIYFHDVFPQSKGWVFNVIPWVVNFIITNVSSYYANVLLSSGTSVTALRKSYSAIFFLGGTLFSVLLTVVETFKQALFVMSLNIGIQAFASCSINLNSQDLCPQHAGALHGLINSVAALAGIMGVYVTGYILETTGHWFSVYALTAFVSFSGFLAFQLFGSGEQLNI 1514
+E D WS+P WT T +GT +YC RS+M IC +++++ GW+K+ +G+ LS+FF GY T ++GG+L DR GGE++I+ SA+ W + T + P +A + A L TF +R G+ QG YFP+ ++ ++ V E+ F +GS GT++TG VGSL++E + W+ +F G LLWV+++ R S VPWR++ + W V++ + FF LLSW P +F + FP +KGW+FNV+PW+V + S + ++ L++ G +RK + ++F++ L +F +++ S +IG+Q F I++N QDL P AG L G+ N+ ALAG++GV + GY++ETTG W ++ L A +S G F +FG +++++
Sbjct: 6 DEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWNKKEAGIVLSSFFWGYCLTQVVGGHLGDRIGGEKVILLSASAWGSITAVTPLLAHLSSAHLAFMTF----SRILMGLLQGVYFPALTSLLSQKVRESERAFTYSIVGAGSQFGTLLTGAVGSLLLEWYGWQSIFYFSGGLTLLWVWYVYRYLLSEKDLILALGVLAQSRPVSRHNRVPWRRLFRKPAVWAAVVSQLSAACSFFILLSWLPTFFEETFPDAKGWIFNVVPWLVAIPASLFSGFLSDHLINQGYRAITVRKLMQGMGLGLSSVFALCLGHTSSFCESVVFASASIGLQTFNHSGISVNIQDLAPSCAGFLFGVANTAGALAGVVGVCLGGYLMETTGSWTCLFNLVAIISNLGLCTFLVFGQAQRVDL 429
The following BLAST results are available for this feature:
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