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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004109 ID=TCONS_00004109|Name=TCONS_00004109|organism=Clytia hemisphaerica|type=transcript|length=1079bp
TCTCATCATTGGCTATCTGTCATTCTTGATTGGAACATTACGTCATGCAG
TGGGAGAAGACCCAGAATGCATCTGCTCTAACTGCATCTAcatcaaaaac
ttcaaagatgAAACAAATGCAGTTCAAAATTGCACTGACCCGATGATAAG
CGTCTTTTGCAAATCATTTCAGCAACAGAACTGTgtaaaggggtgttata
tcgtCACAACAAAAAGTGCTCAAATTGATAATTCGCTATTTACCATAAGA
TGTGATTGTTTGCCGGATTTTACTGGTACGAAATGTAACCAACCCATTTC
AAACATCACAACATCTTGGATCACCGAATACACCGAGATGGACACGAATA
GTGGATATACTTTCAATACAGTTCAAAATACAGAAACTTATTTACCTAGC
ACCTTAGATGTCCTCAAAACAAGGTCTTACTTAAGTAATACGAGCTCAAC
CGCTATGAACTACGACATTTCAGCAGCTAGTATCGAATCTATCTATCAAA
CATTTGAAACCACAGCCAGTTTCTTCATCACCTCTACTCCTACTGCATCA
GAAAGAATGGATTTCATGAGTGTCGCTGTCCAAAACATGAACAGCAATTT
TAGCTATGCCGGCAAGCCATCGATGAAATTCTCTCAGCATCCACAACGAT
CAAGCACCATGTTTCTACCACAACAAACACAAATGCTAGTGGTTACAAAT
CCTTATGTTTTGGTGAACCATAATCAACTCCAAACACCCAACATCAAAAC
AGGTGAACGTCTCGTTATCAATGGCTGTCGGTTCCGTAAAAATGGGCCAC
CGATAACACGTGGCAATTACGATCCTGTCTACATCCAAGATGGTTGGAAC
ATTATAGGAACAACAATGACAATGATGGATGCGTCAAACCTGTAccagat
gacgtcattggaGTTCGCCAAATCTGCTCCAGAGCATGTTGGCTGGTACA
GATGCGGCATCAGACACAAAAACGGTTCCATGATCAATATCGATAGTCGG
CCAGTTTATGTTTCACTTCAAGATGTATCTGTAAGCAGATTCAGAGTGAA
GGCAAGTGAAAAAGCCGAGCAAGCTGAAG Run BLAST on NCBI transcript from alignment at sc0000039:254563..263223- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004109 ID=TCONS_00004109|Name=TCONS_00004109|organism=Clytia hemisphaerica|type=transcript|length=8661bp|location=Sequence derived from alignment at sc0000039:254563..263223- (Clytia hemisphaerica)
TCTCATCATTGGCTATCTGTCATTCTTGATTGGAACATTACGTCATGCAG
TGGGAGAAGACCCAGAATGCATCTGCTCTAACTGCATCTACATCAAAAAC
TTCAAAGATGAAACAAATGCAGTTCAAAATTGCACTGACCCGATGATAAG
CGTCTTTTGCAAATCATTTCAGCAACAGAACTGTGTAAAGGGGTGTTATA
TCGTCACAACAAAAAGTGCTCAAATTGATAATTCGCTATTTACCATAAGA
TGTGATTGTTTGCCGGATTTTACTGGTACGAAATGTAACCAACCCATTTC
AAACATCACAACATCTTGGATCACCGAATACACCGAGATGGACACGAATA
GTGGATATACTTTCAATACAGTTCAAAATACAGAAACTTATTTACCTAGC
ACCTTAGATGTCCTCAAAACAAGGTCTTACTTAAGTAATACGAGCTCAAC
CGCTATGAACTACGACATTTCAGCAGCTAGTATCGAATCTATCTATCAAA
CATTTGAAACCACAGCCAGTTTCTTCATCACCTCTACTCCTACTGCATCA
GAAAGAATGGATTTCATGAGTGTCGCTGTCCAAAACATGAACAGCAATTT
TAGCTATGCCGGCAAGCCATCGATGAAATTCTCTCAGCATCCACAACGAT
CAAGCACCATGTTTCTACCACAACAAACACAAATGCTAGTGGTTACAAGT
AAGTATTGGTCTGTTAATTTTTCATCCTTCGCATCTCTCTGGTAGTTCTC
TCCAAGCCATCGCGGTGCTCTAAATTTAAAACGATATGCCAAGTATGACT
ATTAAATATATCACAGCCCTACACCTTTAGTTTATTACACATGAAAATGT
CATTGGCTTCCTTGTAGGAAATATATCGTCCCCATATTATACCTGTCTAT
CTAGACACTTCATTGAAATTTTATTGGCAGCAATTAAAACCTTTACCGGA
AAGTGAAAGTGGTAGATAATTCGATTCTAGTTCTTATTACTTAATGTGAA
GCAATTAAAATGTGGTTTAGCTATTCTACTGCGCTATGCTAATTAAGAAA
AAGTCAATTAATTTTTTTATTTTTATTTTATCCACAAATGGTTTTGTTTT
CGGGTTCAGTTTGTCATACTTTTGTTCTTGAATAGAATCTCGATACTGCT
TGATGGGCATCTTTTTGAGAAGTTTTCTGCAATGCTCTGTTTGATTTAAA
TGAAACTGAGAATTTCAACGCGATTTTATAATTTGTTAGAAAGACGACAA
ATGATATCAAAATAGTTGGTTGAAGTCTACGAATTTCAGTATTGCCTAAC
AGGAAATTATGAAATATTGACGAGAGAGGAGTCAAGATGGTAGCTTTATT
GTTGCATTTACAAATTATATTGATAATGTTAATCCAGGCTAGTGCTTCCA
GACCTGAATGTCCTTGTTATTGCGATGACAGTGACCGAATGAACTGCGCA
AACCAGAAATGGGACACTATACCAACAAACATCCCTGATTTTGTGACTGT
TATAAATTTCCAAATCAACGAAGCACAACATATCAAAGAACGTACTTTCG
ATGGTTTGAATGAAATGGTTCTACTCAGAATGGACAGCAACAAGATACAC
ACCATTGAACCGAAAGCGTTTTTCGGAATGCCGAAGCTTGATGAACTTGT
TTTAAACAATAACCAGATAGGTGAATTCGATGAGAGGATGGTCGACCCGA
GATCTCCTTTAAAAAGAGGCATCAAACTTGATACAAACCAGTTGACAAAA
TTTCCTTTGAACCTTTTAAAAAGACACCGAATGTCTATCAGTGTCATTAA
CAATAAAATACAATGTGATTGTTTTACAGTGATACCATCAGATCTGAAGG
AGTTTGTTTACGGTGAATGTCACGCCACCAGTGGTAGAAAAACGATCACT
TCAATGACCTACACAAGTGCTAATTGCCAGAAATGCGAGCACCATAAGTG
TGTCCATGGCTCGTGCTACCTTGATACGAATGGGAATGCTTTATGTCAAT
GTTTTGACGGATATTTTGGTGAATTGTGTGAAATTGACGAGCAACCAGAG
CTGAGACCTATATCAGCAGATGACGTCATACCTACACCGTCATTAATGGG
GTCGTCGATATTACTGACAACCACATTCAAGTTCAATATAAAACCATCGT
CGTCTAGTGCAATTGAACAACATTCAACCAAAGTAATTTCTGAGTCAACC
ATCATAACATCAACAAGAGCTACGAAGCAACTCCAACCCCCTTCAAATAG
TTTGAAAATAGAAACGAGCAGCTCATCAAAACAAGCACACCTTTTGGATA
CCAAGGGTAAATATTCTTATTGCCTTGAATATATTGTTGTCAACTTTACC
GTTATATCACAATTTTCACCAACAAAGTAAAGCGTCAACTATTTGGAGAA
TAAGCATCTAGGAATGGGCTTTATTATACAGCTTACGAGAACAATAAGTT
TTTCCAGGTTTGAATCGGTATACAGTTGACTCTTGCTAATTCGAAATCGA
ACAGATTTGTTCGGATAACAGAGAGATTCGAATTATAGAGAGTATACTTT
AAGAAGGTTTCTCCCTCCTGACGGAATCTGCAAACAAGTTCGAATTATAG
AAAGATTCGAATAATAGAAGTTCGAATAACGAGAGTGGACTGCAATGCTT
TCTTGGATCAGTTTAGCAGGATCGAAAAAGGGAAATGTTTCCTTCTCTAT
TCACTTTGAATTCCTCTTCAATCAGCAGATTTTTGAACAACATATCGATT
AAGGCTACCCACTCACAAAAATTAAATTTTCACTTCTCAATGACTTTCTG
TCGAACATGTGGTCAATGTCGTCCGCCTAGTAACAATATTATTTTCGTTT
TATGACGAATATTCTGATTTCTAGACAAAGTACAGCAAAACGAATAAAAT
GCAAGCGTAATATTTGTAAGACTGAATCTGCGACGAGTGAAGCTTTGCTT
GTAGAATGTTTCGGATATTTTCTTTTGGTTGAAATGATAATGGTGAGTTG
AATATTTCAAATGAAAAAACGAAAAAGATTGTAATGGAAAAAAAAAGGTT
TCGCTAGCGATTTTCATCTCACAGTTATAGTTCCGTCTTTTTCAAAATGA
CTAAAAAAAATAAAATGACTATGCAAAAGAGGATTTTCGTTTCTCTCTCA
AAACAAGAAAGTTTTAAAATTATCAAAATTTCGATCGTTATTTTAAAGAC
AAAGACAAAAATGATACATCTTCCGGTCGTAAATTTCCTCGTAAGCATGA
AATGTCGAAAGAAAAATCATTTATAATTTATGTAACAAAACCGTGAAATA
TCAAGTTTCCATTGCTGCTTTCTCATGATTGCTTTACGTTAAGAAAAAAA
AAATAAACAATTTGGCTAAGAACATTGATTTATGCTTATAAATTAGTGAT
TCTAATAGATAAAGATTTTTCTTCAGCCAAAAAAAAAAATTTTTAATGAA
ATTCTGCTTGAGCCAACTTTTACCTTTCATGCAAAAGAGAGAAAAATTTA
ATGATCCAAATTTATTCACCAAGTCCAAAAAACCAAATTTTTAGCCATTT
TTTGACAGAAACTTACTCAAAAAACTTTCTTTCCGAAAATCGTGATCCGT
CACATTTTGGCCACCACCGTTTTGCACTTTTGTAACAAAAATCAAAAGAT
TCCTATGATTCAATCCTGAGAAACGTTGGTAACAGAAAAGCGGACGATTA
ATTTATAGGAAATGGAACGAATCCTGACAAAACTTGTATTATGCTTGTTA
TCACTGTTCAGTTTATTTAATGCGAAAGATGCTGAAAAATGTCGGATTCC
CAAGGGGATCTTAACGACTTTTACTACCATCAACCTTCAAATCAGCTCAA
TACAGATGGTTCCTGAAAATGCTTTTGATGAATTGCCAGATGTGGCTTTG
ATCCGTTTGGGTCAAAACAGTATTACAGAAATTCAACCAAAAGCTTTTTA
TAGTTTGCCGAAGCTTAACGAGTGATCAACCGAATCTCGTGTGATTGCCA
AACAGTCATACCCAGCCCTCTTAAAGATCTCGTTATGCGTGGAGGATGTC
TATTTCGTGGTCCTAATGGAAACACGGAAACCAGTAGCGGCCTGGCTTAA
TTTTCTTGGTGGTGCAAACTATGAAATTGGCGCCTCTGGTATTTTTGTCC
TTATTTCCGCCCTATACCATTAAGTGAAACTACTGTAAGAGCAGTGACTG
GTTGAAAGTAACGCCCGGAATCTCTGAGTTAACAAACTTTTATTTATCAT
TAAAGATCAATGGCTGAAAGAGGCCCCAAAAATTAGAAAGTTGGCAAGAA
TAAGAGTTCTTTGTGTAAGAAAGGTCAACCAGTTTATAAGATATTCTTAA
AGGAGAAAGTTAGTCCGCATAAGACCACAAAAACCACAGCGAACAGTTTC
GACCAATCTCTCATTTTGAAGGTGAGCATCCTCTTTAACCCCTGGTGGAT
ACACAACACTTCTCTTGCTTTGACTTTTCGCAATTAAATGTTGATAGTAG
TTTTGAAAAAATTCGTAAAATAAAACGAAGCGCCGCAGGCGAAAAAATTT
ACATTGCACTTATAGAAGGCGCTAAAAATGTGTCAAAGGGCGCAAAATCG
CCCAATCAAACATCAAAAATAATTTTGGCGCCCCCTTGAAAAGCTTTTTT
GGCGCCCCNTAAAATAAAACGAAGCGCCGCAGGCGAAAAAAAAATTTCAG
CGCTAAAAACGTGTCAAAGGGCGCAAAATCGCCCAACGAAACATCAAAAA
AACTTTTGGCGCCCCCTTGAAAAGCTTTTTTGGCGCCCCTCTCAGGTCTT
TCTGGGTGGTGCACTGCACACCCTGCACCCCCTGCCAGGCCGCCACTGAC
GGAAACGGAGACATTTCATCTATCACTTAATGCAGAGGTCGATTGTCAGG
CATGTGCACATAAGAACTGTGGAAATGGCTCATGTGTCCTTACAAATCAA
TGCCGACCCATTTGTAAATGTTTTACTGGCTTCTCTGGTGATGGCTGTGA
ATTTGAAAATGCAGTTTTGAAACACCACTAATGGTTACTCGTTCCAAGGA
TTGAAATGCAGCATAATTCTTAGCATATAATTTTAGTTTTGACCTCGTCA
ACTGGGTGAACAATTTTTTCAAAATTTTCTTAGCAAATTTCGGACATCCT
GATAATAGGGCAAAAAAAGGAAGAGCTTAAAAAAAATTCAGGATTGGGTA
TCAAATGGTTGAAATAAATGTTTGAAAAGAAACCTTTTGAATAAAACGTT
TGCTTTACCAGTAGAATATTAAAAATTCATTTTCTGCGTTTTGTTAGAGG
AAAGTAAAACTAAATTGCAATAGAGATAAAACCTGAAAGTGTTTTCCAAC
ATAGATAAGATCTGTCGTAAAAACGCAAGCAGCCTGTTGAGGTCAATAGC
GAACGTGACTTAAATTAAAAAAAAGAAAAATGAAAATACGTAAAAGCTAA
TAGCCACTTTAATTGTCCCTTTACAATTAAAAATATAATCCAACTTTTGA
TTCTCGTTACATTCGAGGAAAAAACTGTTTTGAATAAAAAATGATGACGA
AATTACAGACGATTTTAACTTTTCAAGAGGTCGTATCCTTCCGTGTAATG
ATCTTAAATCAGAAGGTTTAATTGAATCCAATATGTCTTCCTTGTTCCTA
GGAGTGGTATTGGGTGAACATTAATTTGAAGAAGAGAGCATGCTTAGTAT
ATGATGTATGAAGAATCGTGTTGTTGTTTTTTGTTGTTGTTGTGAACGAT
TAGTGGTTGCTTCCTCAAATATTCCTCTATATGTGGCGTTCATTGGTGTT
TAACAATCAACAATTTATGTCATAATTAACTTCTTTCTCATTAAAATAAT
CGTCTTCTCAATTAACCCGAAACTTTTGTGAATGTGTGGTGTTGTACTTT
TGTTACATTTATATCGAGACAGATCTCATGAGATTGATATCTTTCTTAGA
AATCTTTCATTGATGTGATTGGATTACAAAACATGCAGTTTTTCAAATTA
CTTGTGGTTGTTTTGAATTTTCACTGGGCATGCGCACAAGAGAAATGTCC
CTGTTTTTGTGACAGTAGCAATCGAATGAACTGCGCAAATCAGCGATGGA
AAGATATACCGAAAAATATTCCAAGTTTTGTCACCGTGATCAATATGCAA
ATCAACCGTGTAGTGAACATTAAAAGTGACGCTTTTCAAAACTTGAGCAA
CGTTACCGTGTTGCGATTGGACAGTAACCGTGTCACTAATATCAGAACAA
ATGCATTTAGAGGGATGAAGAAACTCAACCAATTAGAGCTCACAAGCAAC
AGAGTCAATAAATTTGACTTATCTATGCTGGATCCTCAGTCTCCATTGAA
AGACGGTATTATCCTGAGGAATAACAGATTAAAGACGTTCCCTATGGACG
TATTAATGCATTATAAAGTGCCTATTGATGTGAGTGGGAATCGCATCAGA
TGTGATTGCTTGTCAGTTATACCACAAGAACTGAAACATTTGGTGACGGG
GTCATGCGATAAACCAAAATGGGTTCAAGGAGTCAAACTAAGAGATTTAG
AATACAAAGATGTTGCATGTGATGCTTGCGAAAGTTTGGGATGTGTCAAT
GGTTTTTGTGAAGCCACAGGAAATAGAGCTTTTTGCACATGCTCAGAAGG
TTATATGGGCCGTCTTTGCGACGAGGGTGGTCCTATCGTAGCAACGACAG
CGTCCCTGACAACTAGCATAACACCTGGTGTAATTGAAGTTACAAGATCA
CCAAACACATCACTTATAAAAGTAACGAAATCAACAAAAACAACCATTTC
TGGGAACTTAACTGTATCAAAAGGTCCTATTGTAACACCAAGAGACAAAC
GTAAGATCTTTATTTTCATTGAAATGACGTGGTTATGACAGGATGTCGTG
AGACATGTCATTTTCTCCACGTCAGTGGTATAGAGCGTTCTTTGACGTAC
TTTTCTATCCTTCCTCAATTTCTTTCCTCTAACCATTCCACAACAAATTT
AGAATGAAACTCGTTTTTTGGCCATATTTGAATTCGAACTAGCAAATCTG
AAGAGGTGTCAACATCCTGAATAGCCTATACTAGACGTTACCCGCGTTTT
TTTACGCAATTAACGTTTATTCCACTTTGCGACTTTTTCGAATATTTTGA
GCGCGGGTTTTCGGGCTCTAAACATTCGATTTTTTTGACGTTCGTTTTAA
CTTTCGAAGCTCCTGCAGTAGCAAAATAATCAAATCTGCGTCAAAACACT
TGAAAGGCTTCTATTTTTCGAAAATCGTCAAAGTGGAACTCACTAAGAAA
CGAGATGAAAAATCCCGGTTTTTAGTGAGGTGCTCGCTAGATCCTGAAGT
GATTCACGAGAATAATTTGGCAGTTTGGCACGTACATGCGTACGGTCGAA
ATTTATCAGGGTTCATCAGGTTCTCAAAGTAAAACAGATTTCAAGTCTTT
AAGCAGTCAAAAGTTATATAGAAAAAAAGTCACCACACAAATTGAATTCA
TATTCTATTGGAAAAGCTTTGAACCCGAATGGATACATCAATGAATAATA
TTTGAATGTAATATTTGGGGAAAAGGGATCTTATCTAGCATCACAAATCT
CCTGCTGTGAAGCATATCTCTCGTAGAAAGTCTTTCTGATTGAAAAATAG
AAAAAACAAAGCCACAATTACAATCATTTAATATCCATTAATTAATTACA
AATAAATTAATTGGTTTATTTGATCTTTTTCATCATGATACAGCAAAAGG
CTAAACTAAAATTATATCAGTCATTAACTCAAGGACACCATTCACCAATT
AACCAAGTCCATCTCAATCTATCTCAATCGAAATATCTGACTAATACCAT
TTCACCATGCCCATTATAATAACCGTGATACTGAACTTGCATTCTTTGAC
CCTGGTATCACATCGGTGAAAAAGACACTGACTTTCAAATTTGTTTTTTC
GAGCTTCAAGGTTTTTGTTTTCCTCGCTTCAAGACAGTTTGCTTATGACA
ACAGATAGTTCTGTAAGAAAATCAAGCATCGTAATATCACATTTGATGAA
GGAGGTTGCTATTCGTTTGTATCATATTTTAAGTTATTTTTTTCTCGACA
GATCCTTATGTTTTGGTGAACCATAATCAACTCCAAACACCCAACATCAA
AACAGGTGAACGTCTCGTTATCAATGGCTGTCGGTTCCGTAAAAATGGGC
CACCGATAACACGTGGCAATTACGATCCTGTCTACATCCAAGATGGTTGG
AACATTATAGGAACAACAATGACAATGATGGATGCGTCAAACCTGTACCA
GATGACGTCATTGGAGTTCGCCAAATCTGCTCCAGAGCATGTTGGCTGGT
ACAGATGCGGCATCAGACACAAAAACGGTTCCATGATCAATATCGATAGT
CGGCCAGTTTATGTTTCACTTCAAGGTACGTTTGATGGAGAGCTGGATCG
ATTTCCACAAAGAAGAGTTAAAAGCCTCGCATTATTTCCAAGTTAAATCC
ATGTTTACTCCGTTGCTTTTATTAAAATCAACAAACTCTTGAGCCAATCA
GACGGTTGGTAATACTGAACTTGATATCATAATATTCATTTTCTTTCATT
ATAGATGTATCTGTAAGCAGATTCAGAGTGAAGGCAAGTGAAAAAGCCGA
GCAAGCTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004109-exon-sc0000039-1575043694:262526..263223 | TCONS_00004109-exon-sc0000039-1575043694:262526..263223 | Clytia hemisphaerica | exon |
| TCONS_00004109-exon-sc0000039-1575043694:254799..255122 | TCONS_00004109-exon-sc0000039-1575043694:254799..255122 | Clytia hemisphaerica | exon |
| TCONS_00004109-exon-sc0000039-1575043694:254563..254619 | TCONS_00004109-exon-sc0000039-1575043694:254563..254619 | Clytia hemisphaerica | exon |
| TCONS_00004109-exon-sc0000039-1510915933:262526..263223 | TCONS_00004109-exon-sc0000039-1510915933:262526..263223 | Clytia hemisphaerica | exon |
| TCONS_00004109-exon-sc0000039-1510915933:254799..255122 | TCONS_00004109-exon-sc0000039-1510915933:254799..255122 | Clytia hemisphaerica | exon |
| TCONS_00004109-exon-sc0000039-1510915933:254563..254619 | TCONS_00004109-exon-sc0000039-1510915933:254563..254619 | Clytia hemisphaerica | exon |
| TCONS_00004109-exon-sc0000039-1491911889:262526..263223 | TCONS_00004109-exon-sc0000039-1491911889:262526..263223 | Clytia hemisphaerica | exon |
| TCONS_00004109-exon-sc0000039-1491911889:254799..255122 | TCONS_00004109-exon-sc0000039-1491911889:254799..255122 | Clytia hemisphaerica | exon |
| TCONS_00004109-exon-sc0000039-1491911889:254563..254619 | TCONS_00004109-exon-sc0000039-1491911889:254563..254619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:254563..263223 - |
Blast
The following BLAST results are available for this feature:
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