TCONS_00004097 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004097
Unique NameTCONS_00004097
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004097 ID=TCONS_00004097|Name=TCONS_00004097|organism=Clytia hemisphaerica|type=transcript|length=539bp
CTACCGCTCTACCAAATGGAGGTTCATCTACAATGATCACTCTCTCACCG
AcTGTCTGCGAATTGGAAGTAATAGAAGCAATATACTATAAAATTCAAAA
GAAGGAGATCTTTGATGGATGCACTTCTCCAGATTATGTATCGCGGAAAG
CAATTGCAGGAGAAATTTGCAAACTGTTTCCAGACAATCCGCTGGCGAGA
ATGGCTTACACTAAGAACAACTTGATAGAGGTTGGATGTAAGTTCAAGTT
AAAACATtcaaatgatacaaaacaaactGCTCGACTTTGATGAGGCCAAA
CCACCAAACAAATTGATTGACAGTGATTTCTGACTCTAAGCGTCGAAGTT
GTGTATGTTTGCCATGATATCGAGGAGAGAATATCTTAACATCTAATTGC
CAAGCCTCCAAATCCCgctaaaaatgaaagatttgaATCAACcaaaagaa
ttttatttaatttgacaATATTATTTCTAATACTTTGTATAAAAATTGTA
GTTAAATATTTTCACTATGTTAAAATAGATAGATAGGTG
Run BLAST on NCBI

transcript from alignment at sc0000039:92947..94768-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004097 ID=TCONS_00004097|Name=TCONS_00004097|organism=Clytia hemisphaerica|type=transcript|length=1822bp|location=Sequence derived from alignment at sc0000039:92947..94768- (Clytia hemisphaerica)
CTACCGCTCTACCAAATGGAGGTTCATCTACAATGATCACTCTCTCACCG
AGTAAGATATTTTAAATCATTCGACTCCATGTCTTCGAGATATTTAACTC
ATTTTAGCCCTTCATTTGTTTCATCGGGCACAGTTACCATCTCCAAATAT
GAATTGAATGAATGTCCTAATGTGAATGTCCTAATTTGAATGTCCTAATG
TTAATGTCCTTTATAAATAAATAACATCAGGAAAATTACTCACGGCATAA
CGTTGATGGTTTTTATCAAGCCCAATGCCATCCATCACGTCTGATCACTT
CCACTATGGTTTTGGCGGTTCCTGGTAACTCAAACCATCTAAAAACTGAA
CAAAAAAGAATCCATCAAAATTGATCGAAAATCTAGGTCATCAGTAGTGT
AGCTAAGAGCGCCAAAATCCCTGTAAAAGAGCAAATGTATGTCATTATAA
AAAGACCTCCAATAATTTTGTGTACTTCGCTACACTACGTTTCGTAAATA
AACTAAATTTGGAATGTTAAAGTAATTTGTTTTTCATTTTAGCTGTCTGC
GAATTGGAAGTAATAGAAGCAATATACTATAGTAAGTAAAACACGTTCAA
AATATTTCACATGAAGTTAAATTCAGTCCGCCGTCAAGTTGATATACAGT
AGAACCCGACATTCTAATAAACGGACCGCTCCTCTGGTTATCGGGCAAAA
TATTATTCCCCCAGGTCGTTTTATCCTAGTTGAATCATTCTGAAAAGTTT
CAGGCGGAGACATCTCTTTTATGCAGACACAGATTTCTTCCCTTCATTTA
ACTGCCATCGAGGGTAAAACTAATTTCAGACATGAAAATATGAAAAATAA
GTGTTTTTTTAACTTTTTTTGTTTTGTTTTCCAAATTATCTTCTCAAATT
CTTTTTGAATTCTCTTGTAGATTGTCCAATTGCCGGACACCTCTAATCAT
CGGACATAATCCGATTCCTGATGGTGTCCGCTGATTAGAGGTTCAACTGT
GCATAATAAATTTCAAACCTTCACGATGTTTTTTCTCGTAGAAATTCAAA
AGAAGGAGATCTTTGATGGATGCACTTCTCCAGGTAGCTTTCTTTTCATA
TTCAATGTAACCCTGAAAAACAAAAAGAAACCTGATCTTAAATAAAGAGA
CATCGTTCTTCAAGCGTTCAAGCTTTCACGAAACATCATCTAATAAATTT
TGTTTTGAAAATACATCTTCTTGGTCTTTTCTGAGTCAGAAGCTTAAAAA
AAAGGTCCCCATTAAAGCAGGCAGTCATCTTAATTACAATTCAGCGAGTA
AGACTCGATGAGGGCATTATTGTAACATTCAAGAGAAGAGAAGAGAAGCG
AAGAAAACAAATCTTACAAGAAATAAAGTGGATCGAATTAAAAATGAATC
GACTCTTTTTTTCAGATTATGTATCGCGGAAAGCAATTGCAGGAGAAATT
TGCAAACTGTTTCCAGACAATCCGCTGGCGAGAATGGCTTACACTAAGAA
CAACTTGATAGAGGTTGGATGTAAGTTCAAGTTAAAACATTCAAATGATA
CAAAACAAACTGCTCGACTTTGATGAGGCCAAACCACCAAACAAATTGAT
TGACAGTGATTTCTGACTCTAAGCGTCGAAGTTGTGTATGTTTGCCATGA
TATCGAGGAGAGAATATCTTAACATCTAATTGCCAAGCCTCCAAATCCCG
CTAAAAATGAAAGATTTGAATCAACCAAAAGAATTTTATTTAATTTGACA
ATATTATTTCTAATACTTTGTATAAAAATTGTAGTTAAATATTTTCACTA
TGTTAAAATAGATAGATAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002283XLOC_002283Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004097-exon-sc0000039-1575043694:94718..94768TCONS_00004097-exon-sc0000039-1575043694:94718..94768Clytia hemisphaericaexon
TCONS_00004097-exon-sc0000039-1575043694:94188..94226TCONS_00004097-exon-sc0000039-1575043694:94188..94226Clytia hemisphaericaexon
TCONS_00004097-exon-sc0000039-1575043694:93686..93727TCONS_00004097-exon-sc0000039-1575043694:93686..93727Clytia hemisphaericaexon
TCONS_00004097-exon-sc0000039-1575043694:92947..93353TCONS_00004097-exon-sc0000039-1575043694:92947..93353Clytia hemisphaericaexon
TCONS_00004097-exon-sc0000039-1510915933:94718..94768TCONS_00004097-exon-sc0000039-1510915933:94718..94768Clytia hemisphaericaexon
TCONS_00004097-exon-sc0000039-1510915933:94188..94226TCONS_00004097-exon-sc0000039-1510915933:94188..94226Clytia hemisphaericaexon
TCONS_00004097-exon-sc0000039-1510915933:93686..93727TCONS_00004097-exon-sc0000039-1510915933:93686..93727Clytia hemisphaericaexon
TCONS_00004097-exon-sc0000039-1510915933:92947..93353TCONS_00004097-exon-sc0000039-1510915933:92947..93353Clytia hemisphaericaexon
TCONS_00004097-exon-sc0000039-1491911889:94718..94768TCONS_00004097-exon-sc0000039-1491911889:94718..94768Clytia hemisphaericaexon
TCONS_00004097-exon-sc0000039-1491911889:94188..94226TCONS_00004097-exon-sc0000039-1491911889:94188..94226Clytia hemisphaericaexon
TCONS_00004097-exon-sc0000039-1491911889:93686..93727TCONS_00004097-exon-sc0000039-1491911889:93686..93727Clytia hemisphaericaexon
TCONS_00004097-exon-sc0000039-1491911889:92947..93353TCONS_00004097-exon-sc0000039-1491911889:92947..93353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:92947..94768 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.129399	0.0905952	0	0.762442	0.2148	0.715004	0.148508	0.793608	0	0	0.0827211	0.228567	1.67426	0.103945	0	0.616335	0.224135	1.15427	1.23619	4.42246	8.81023	0.119326	0.121574
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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