TCONS_00004095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004095
Unique NameTCONS_00004095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2155

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004095 ID=TCONS_00004095|Name=TCONS_00004095|organism=Clytia hemisphaerica|type=transcript|length=2155bp
TCCAACACAGTCTTAATATAATCGGCACTGAAACATATTATATCAAAAGT
GAACAATTTGATGAAAGATTAAAAGCACAATTAACTCCGTTATGCAATGA
AAATTTctacaaaaacattttaaagGTATTTGAACCACACACTGATACAG
TTCTATGCCAAAAGAAGATTGCAGTCATGAAGTCCTTCCAGACACTGATT
ACTGTCATGTCAAAATTAGAAGATGATTATTGTTCACTCTGTAAGAAAGA
AGTGAAAGACTTACTGTCCTCTTCCATCACGAAGATTATGAAACAATGGG
TTTTCTCTGAAGATGTGTCTAAGAATAGAAATGTAATCGTGGAAATTGCG
AGCTTTACCTGGCTTTTGATCAGAACTTGGAAAGGAACGATTGTTGAGCA
CCAAGACATTGTTTCCACGTTAACTGAATGTTTAACGGAACTGTCGACTT
CCGATCGAACCATATTCGCTGAAGTTGTTTTCCCCGTCTATATGTCGATA
CTGGCTCTATTGCAAACGCAAAATAAGGCTGTGATTGGGAGCACTTTATA
CCTGAACCTTTTAAAACTGGTTATTCAAAATCTACATCATCACGACGAGA
AGAGTGAACAGTTCACTAAACACACACAGGTGAATATTGCAAGTATCAGT
TTGATGACAGAATTGGTTCTCCAGATCTCAAAGGACTCATTACCATCAGT
TATTGAAACATTTCAAAGTCGTGGCACTATACAGAACCTCTTGCGTGACA
TGACAATCAATCTGCAGAAAAGAATCGACTTGGAATATGTGGAAACCGTC
CTGAGATTCATGCTGTCATCCAGCCAAAAAGATTTGATAGCAGAACATTT
GCATCAGTGTGGCATCGGCAAATTCAAATGTCTCAATCTGAACAATGTGC
AAGCTGCAAGGAAATCCTCACAGGTGGCCAGGGAGATCTGGTCATTAATT
TTGTCATTGACTGCACGCTTGTTGAAAAAGTTGAGGTTCACTTTCTTGCA
AGTAGCTGTCGATTTCCTTGGCGCGTACGAAGAAGATATCTTTCAGaGTA
TGAATTTGATGGAAGAGATGACGAATGGATCCTGTTTGTTGATCTCTGAA
CAAATCGccattttgtgttttgaattgGCTCATTATGATCATGATATTGA
ATTCCTGTTACCTGATATTCACCAAAAGTTGAAGTATGGAGTGGCTCAAA
TGGTGAAGCTTTCTGTCGCCCTTCTTGCAAGACAAAAATTAATCACACAT
CTCACCGAGTTCAAATCGACAGACGACCTCCATCAAATGATCAGAGGAAC
TAAAGAACCGAGTCCCGTTTCTTTCCGAAGTGATAGCGTCCGGTCAGGCT
ATAGTACTGCAGATTTCGAAAAGTTAACTGGACTGGCTGAAGTTGCACAA
AACCGGTTGATCAGCATTTTATGTTATTGTTTGGGCTCGTTGAGAAGAAT
CACACCAAGTGTCGTAGAAGCCATTCTTGATGAGGGGATGGATATTGATA
GTTTCACACCATTAGTCGATTTCAAGTTCAATTCACCCACATTGGAAATG
GAGGACAACCCGACGTTCGGTTCCCTTTTAGCGTGTGTTAATATCGCCCT
CAAAATGATTTACAAGCTTGTACAAGGGGATTCGGAGCACGTGACGCCAG
AAAAAGATGTCTTTAATACTTCGCTCCCAACAGATGCTGACAAACAAAGA
TCTCACTTGTGGTTTATTGTGGAGAATTCTTTGATCGTTACAATATCGCA
AGCATCCTGTTATCTCCGCCATCCTAACATCAACGAAGGTGGAAAACAAT
TCTTGAAAAGAGAACTTGGAAGTGAACTGACCAACATTCGACATGCTGTG
CAACGTTATCGATCAAGACGTGGTATCCCGCCCTCGCCCGAGTCCTCAGA
ACGCCTCTCCGCCTCTTCGATGTCCTCGTTTCGTCGTTCTCCAAGCAAAC
TCTCATCTTCAATTAGTCTCAACGAGGAAGAAGAAAACTCTGTCCTTAAA
CTGGTCGATACTTATACTCGCTATTTACTAcgataatattttaatattgt
TTTGTATCCAGGCAATTTATTTGTTAGCAGGTTTTTTATcggaaagaaat
tcaaagaaaagtaaTTTGCTTATTGACTTTCATGATTTGACTTGAAAGAA
ACCGC
Run BLAST on NCBI

transcript from alignment at sc0000039:28038..37327-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004095 ID=TCONS_00004095|Name=TCONS_00004095|organism=Clytia hemisphaerica|type=transcript|length=9290bp|location=Sequence derived from alignment at sc0000039:28038..37327- (Clytia hemisphaerica)
TCCAACACAGTCTTAATATAATCGGCACTGAAACATATTATATCAAAAGG
TACAAATTATTGATTGTGATACAAAACTTAATGAACATATTTAATTGTTG
TTGACAGCATCTGTATTTATTCACTTACCTTAACCGGACAGATGAGTCCT
GGGAAGGACGAAATACGTTCTGTAGATAAATCCTCTTCTCTGATTTTCAG
TGAACAATTTGATGAAAGATTAAAAGCACAATTAACTCCGTTATGCAATG
AAAATTTCTACAAAAACATTTTAAAGGTATTCTATCATGCACACTTTATA
TTCCCTCAGTTTTGAGCTCAGTCAAGTGCTACAAAGATTTCTTGTTTGAC
ACGTTGAATGAATCATCCGTGAAGTGCGAATGTTTCCATAGACTTTTTTA
ACCACGATGTCATTTTGACTCAAAAAATTAGCAGTGAAAACTTTACGTAA
TGACTCCGAAAACATTGTGATAGGGATCAATTTCTTAGTGCTTTGATTTT
ATCTAGCTAAGATTATGTAATGTTTTAGTTTAGTTTTAGAGTCATTGCAA
TGCTTTTGCTGCTAATTTCTAGAGTCAAAATGATATTGTGATTTGCAAAA
GGTGTCTTAATTTATTTGCCATGTATTTTTCATAGTCTTCCAAATAATGA
AAACCTTAAACTTAAAATTTCCATTTTTCCCACCAAAGGTATTTGAACCA
CACACTGATACAGTTCTATGCCAAAAGAAGATTGCAGTCGTGAAGTCCTT
CCAGACACTGATTACTGTCATGTCAAAATTAGAAGTATGTGAAATGAAAC
AATAATAGCTTTCCTTGCAAACTATTTTGATACACCTTTCGGCGTAATTA
TTTAGATTTTCTTTTNGATGAGTCCTGGGAAGGACGAAATACGTTCTGTA
GATAAATCCTCTTCTCTGATTTTCAGTGGACAATTTGATGAAAGATTAAA
AGCACAATTAACTCCGTTATGCAATGAAAATTTCTACAAAAACATTTTAA
AGGTATTCTATCATGCACACTTTATATTCCTTCAGTTTTGAGCTCAGTCA
AGTGCTACAAAGATTTCTTGTTTGACACGTTGAATGAATCATCCGTGAAG
TGCGAATGTTTCCATAGACTTTTTTAACCACGATGTCATTTTGACTCAAA
AAATTAGCAGTGAAAACTTTACGTAATGACTCCGAAAACATTGTGATAGG
GATCAATTTCTTAGTGCTTTGATTTTATCTAGCTAAGATTATGTAATGTT
TTAGTTTAGTTTTAGAGTCATTGCAATGCTTTTGCTGCTAATTTCTAGAG
TCAAAATGATATTGTGATTTGCAAAAGGTGTCTTAATTTATTTGCCATGT
ATTTTTCATAGTCTTCCAAATAATGTAAACCTTAAACTTAAAATTTCCAT
TTTTCCCACCAAAGGTATTTGAACCACACACTGATACAGTTCTATGCCAA
AAGAAGATTGCAGTCATGAAGTCCTTCCAGACACTGATTACTGTCATGTC
AAAATTAGAAGTATGTGAAATGAAACAATAATAGCTTTCCATGCAAACTA
TCTTGATACATCTTTCGGCGTAATTATTTAGATTTTCTTATCATACAAGA
TGTTTTGAGAATTGAGTTGAGAATCAGTTGCATTTTAGAATTTCTAAGAT
ATATAGAGGTTAATCGCTTACTTTATGCCAATATTTGTGAGGATGGAGAG
CTATTAGCACTCTTACTTTTAATGGAAACTCTGTTGTTCTTTCAATAGGA
TGATTATTGTTCACTCTGTAAGAAAGAAGTGAAAGACTTACTGTCCTCTT
CCATCACGAAGATTATGAAACAATGGGTTTTCTCTGAAGATGTGTCTAAG
AATAGAAATGTAATCGTGGAAATTGCGAGCTTTACCTGGCTTTTGATCAG
AACTTGGAAAGGGTAAGTCTGAATGGATCTGAAAATCGTAAAAGGATCAA
GGGTGGGTAGGAGAATTTGACTAATTTCGTTTTTGCTTCATACATAGATG
GATGGGTTTAATTGCTTGCGTTAAGAAACTTTTGCGTATGAAATAAATCT
ATCCAACATGATTCTGTTTGGTTTGTTTCCTTTAGAACGATTGTTGAGCA
CCAAGACATTGTTTCCACGTTAACTGAATGTTTAACGGAACTGTCGACTT
CCGATCGAACCATATTCGCTGAAGTTGTTTTCCCCGTCTATATGTCGATA
CTGGCTCTATTGCAAACGCAAAGTAAGAATGCTTTCATTTACCTCTCCAA
TGCCTGGGTAGTTTTAAAATTAAACTTATGGAAACTCATGACTTAATTGT
TGACTTTAACCATACCTTATGTTAATTCAAGTGAAAAAAAGCTGTACCTG
CCAAAAAACTTGGAAAAAGTTTCTTTTCTTTCCTAACCCAGTCAGTACGA
AATATCAAGTAATAATTATCTATAAGATGACGTCAGTTGGACCTTGAAAT
AATGTCGCTAGTCAACTGGAACTGCGTTTTTCGGCAAAAAAAAATCCTTT
TACATTTATTTTCCCTTCTACAGATAAGGCTGTGATTGGGAGCACTTTAT
ACCTGAACCTTTTAAAACTGGTTATTCAAAATCTACATCATCACGACGAG
AAGAGTGAACAGTTCACTAAACACACACAGGTAATACATTTAAAAGGTTT
GGTTGCGTCGCTTAAAAGATGTCACGGATCCTAAAGGTTTCCCCCTACTA
TTGCAAATTATTTTTGAAAGGGCTTGTCCAGAAAAAAAATTGATCATATC
AAATTATAGGCCTTTTCTAGATTTTTATGATTAGATAGTTTTTTTACTGA
ATCTTGACTTGAACTTTAATTTTTTGCTCGATTATCCTCAACTATTGTGA
AAACTCGAGAATATTCAATATTTACTCATTTATGATTTTTCAAACTGTAT
GACTCATTGGATATCCACGAGTTTTTGACGAACAAACCCTGGATACCAAT
AAAAATAACCTATATTCGGCCCTGTTTGATGTTTGTCTACCTATCCTCTC
TCTCTCTACGTAGAATTATCATCTGGTAAACCTCAATTTCCAATACTTTA
GGTGAATATTGCAAGTATCAGTTTGATGACAGAATTGGTTCTCCAGATCT
CAAAGGACTCATTACCATCAGTTATTGAAACATTTCAAAGTCGTGGCACT
ATACAGAACCTCTTGCGTGACATGACAATCAATCTGCAGGTAATTTCAGA
ATCTTAAAATTATTCGCCGATTTCTTTTCTTGTATGATTTCAAAACTATT
TTAGTAGCCGCTGGGAGTTAAATTCTTCACGCTCCCACCACCCAACGCTA
CTGTTCGATACGTGTTATTTTTCAATTGTATGACTCAAAACATGGAAGAG
AAGATTTGTAGGGTTGGCATTAATTGAGGGTTGCACTAAGAAGTTTTCTA
GAAAATATTCAAATAATACTAATCTAACAGTGGATTCTATTTTGATTCAT
TTTTGTAAAATTTTTTGTATCATCAATAGAAAAGAATCGACTTGGAATAT
GTGGAAACCGTCCTGAGATTCATGCTGTCATCCAGCCAAAAAGATTTGGT
ATGGTTTCTATATTATTCTCTATGAACATATCACCTAGATTTTACTGGAA
GAGCTATAGAGATTAGAACAATTAGACCAGAATGTTTGGTTTATATCTCC
TTCGTATTTATCTTTTTATCTTTAGTGAACTTTCATGTCCTTACACTTTT
AGATAGCAGAACATTTGCATCAGTGTGGCATCGGCAAATTCAAATGTCTC
AATCTGAACAATGTGCAAGCTGTATGATTTTTTCTTTTCAAAACATAATC
AACCAATAATTTCTGGCAAAGCGAATATGACTCTAAAGTGATGTTACCTA
CACAGTCAACTATCTAATTCGAACCTCTATTATTCAAATCTTTATGTAAT
TCGTACCAAAAGATTACTTCCTTCAATCTGAAAAGTTGTATAAGGTTTTT
CCCGTAACTAAGATACATAACTCTTCTTTCAGGCAAGGAAATCCTCACAG
GTGGCCAGGGAGATCTGGTCATTAATTTTGTCATTGACTGCACGCTTGTT
GAAAAAGTTGAGGTTCACTTTCTTGCAAGTAGCTGTCGATTTCCTTGGCG
CGTACGAAGAAGATATCTTTCAGGTAACACTACTATATACTGGTAACTGC
TTGATCTTTGAAATAAAGCTTTACTTTTAAATATTATCGTGTTTTTTTGC
ATGTGGTTAAAATTGGAAATGTTTTTTTGTTGGCGAATAAACTACTACTT
AGTAGATGGTGTTGTAGTTTGTTATTCCATTTCGAAAAAAATACATATCG
TGTAGCAGGATGGGAGGGGTGAGGTTTTGGAATGAATTGAATGACTAACA
CAAGATATTTTATGTTTAGAGTATGAATTTGATGGAAGAGATGACGAATG
GATCCTGTTTGTTGATCTCTGAACAAATCGCCATTTTGTGTTTTGAATTG
GCTCATTATGATCATGATATTGAATTCCTGTTACCTGATATTCACCAAAA
GTTGAAGGTAAGAAGAAGTGATGGCCAAATGGTTTAAGGGGTCAGTGCCA
CTAACCAAGGTTTGTGGTTCGCACTAACCAAGGTTTGTGGTTCGAATTCC
CCATCCTTCCAATATACCGTTCTGTTCAAAGATAGCTTAGCCGCCTGGCC
TTGGACCTCGTGAAAACAACCAAAAGACTATTTAAAAGTCCTAGATTGCC
GGGCTATTCACGTAAAACAATGATTCAAGGATTGTTTGTTTATCTGTGTT
TTTTTTCTCATTTTGAGATTGAAATATATGAATATATCGGCCTATCTAAA
CCCAATGAAAACTGGGTTGCTTCTGCAATATTTTAAGAAACCATAATTTA
CTTTCTTTCATTTCTTTAGTATGGAGTGGCTCAAATGGTGAAGCTTTCTG
TCGCCCTTCTTGCAAGACAAAAATTAATCACACATCTCACCGAGGTAACT
TTTTTCCATGGCGGGTTCTATGTTCTTTTTTTTATCCTCAACGGAGCAAG
ATTTCCGGAAAAAAAACATGAACTAACTAAGGCCAAAAGTTGTATCATTT
AATTGAAGTTTTAGTTTTTAAGTCCCATAAAAAGTGACGCTACTTCTGTT
TTACGGCGTTTATGGGTTTTTGGGCAAAAAGTTTTGAGCTTATATCCAAT
CCAGTTATATAGCTCAGCTTTCTATTTCCAGTTCAAATCGACAGACGACC
TCCATCAAATGATCAGAGGAACTAAAGAACCGAGTCCCGTTTCTTTCCGA
AGTGATAGCGTCCGGTCAGGCTATAGTACTGCAGATTTCGAAAAGTTAAC
TGGACTGGCTGAAGTTGCACAAAACCGGTAATTGTTTTAAATTTGACTTT
CATTGGCTTACCTTAAATATATTCTTTTTATATATAAAAGAGAAAGGAGG
CTTGCATATATAAAAGAGAAAGGAGGCTTGCCTCTGTTACTACTCTGTAT
CGGAGTGTATCTCACGTTTATCGTTTCGTAGTACGGTAATGAATTTTGAA
ATTAGCCGTAGATATCGGGTCTGTGTACAGACCACTTATTTACTGACATT
AGCAGAATAAACAATAGGATTTCTTAAAAATTTTGTTCGCGTTGCACAGG
AGCCGGAGAAGTTTATTTTTTTCCAGTTTAAAAATGCTCTATGAGCAAAT
AGTAGGAGATACGTTAAATTTTGTCTTTCTCAAGCCAAGTCTCCTTACTT
TTTGAAATCCTCTATACAACTTTAAGCGTTGGCTCATTCATTCTCTTTAC
TGCTGATAGGTTGATCAGCATTTTATGTTATTGTTTGGGCTCGTTGAGAA
GAATCACACCAAGTGTCGTAGAAGCCATTCTTGATGAGGTAAAAAGTTTT
TCCCGTCGAATGTTAGTAGTAAGTAAGTAAGTCTACGACCGCAGTCGGAG
GCGACCCCCCGAAGGCTCCTCTTTCGATAGCTATCTACCCGAAAATAGGA
GAGGGTGCCACTCTTTCTCCCTGGACTGCTCCGCTTACCCTTGACCCTTC
TCTTAATTGCAGTAGTGGTGAAGAAGTAAAGCTCGAATCTCATTGGCTTT
CAACTTTTTCAAAGATCCAGGCTATTTATTATCAAAGATTCAGGCTATTT
AATTCCGTATTCTAATTCAAAGTTGATAAATTTCAGAATTCAAATCCGAA
TCTTGTGTTCTCCGTGTTCTTGTGTCCGCAATGAGAAAAATAAATTTTAA
GATGGTAATGGCTGAATCTTGTGTTCTCTGTGTTCTTGTGTCCGATTTTA
TCAATTACAGAATTTCCAAATCCAAATCTTGTGTTCTCTGTGTTCTTGTG
TCCGATTTTATCAATTACAGAACTCCCAAATCCAAATCTTGTGTTCTGTG
TTCTTGTGTCCGATTTTACGGTTAGTGTAAAACGCAGGTCACAGGTCACA
GGTCACAAGATTTAGTTTTACTATTTTAGAATTTATTTTTCCCATCACGG
TGGACACAAGAACACAGAGAACACAAGATTCAGCCTTACTATTTTAGAAT
TTATTTTTCCCATTGCGATGGACACAAGAACACGGAGAACACAAGTTTCA
GTCTTACTATTTCAGAATTTATTTTTCCTATCGTGGGGACACAAGAACAC
AGAGAACACAAGATTCAGCCTTACTATTTTAGAATTTATTTTTCCCATCG
TGGTGGACACAAGAACACGGAGAACACAAGATTCAGCCTTACTATTTTAG
AATTCATTTTTTCCATCGTGGTGGACAGAAGAACACGGAGAACACAAGAT
TCCGTCTTACTATTTTAAAATTTATTTTTCCAATCGAAAAAATCATGACG
AATCTAGGCTGAGAGAGTATGTCAAGCCTGATGATGAATCTAGCCCATGA
ACATTTTTTAGCCTGAATGACCAGTTCTTTATCAGCCAATCAGATTGCTC
CTTTACTTACTTCACCTTAACCCCTTAATTGCTGAGCACCAAGCAGAGAT
GCATCAAGTACCATTTTGGGAATCTTTGGTCGAATGCTTATTTCACCCAC
GATTTGAAAATGCTCCGTCTTAGCTTTATATATGTTTTTCACATGTTTAT
TGATAAGAAAGTAACTCGTAATACTGATTGATGTATACTGTGTTTAATTC
ATATATCAAGTTTTTCTCGTTTTCTCTCCGTTTTGCTCAGGGGATGGATA
TTGATAGTTTCACACCATTAGTCGATTTCAAGTTCAATTCACCCACATTG
GAAATGGAGGACAACCCGACGTTCGGTTCCCTTTTAGCGTGTGTTAATAT
CGCCCTCAAAATGATTTACAAGGTTTGTATAATGTTTGTTATATGTATTT
TGTTGATGTAACCTTTACGTGTCTTCGACAGAAATCTTAAAAATTACTTG
CGTATTTTTTTGACACAAATTGCTAATGCAATACGAATATTAGAGAATAG
AATTGAAAAGTTTCTAAAAGGCGGATACTTCTAATTAGCATACACTTCTA
ATTAGTGGACACTTCTAACTAGTGGACACTTCTAACTAGTGGACACTTCT
AATTAGTGGACACTTCTAATTAGTGGACACTTCTAATTAGTGGACACTTC
TAATTAGCGGACACTAACCCTATTCCCCGATGATGTCCGCTAATAAGAGG
TTCCACTGTTCTAGGGCATTTAATTGGCGAGCTTTATATATTTATATTCA
TTTATACAGCTTGTACAAGGGGATTCGGAGCACGTGACGCCAGAAAAAGA
TGTCTTTAATACTTCGCTCCCAACAGATGCTGACAAACAAAGGTAATAGA
TGAAATTTGTCAAGTTCAGGAATAAAGGTTGAAAACTAGTTTCCTATATG
TTTTTCACCCTCTCCCAATTAAAGCAAGAACTTTTTACATGGAATACTCT
TGGCAGAAGATAAACACAGCCAATGATGCTAGATAAAAAATCAAAACAGT
TTAAACATTTATTCTCAGGGGCACAATAAATTTAATAAATTTTGGCGGAT
TTAAAAGTATTCAAATTTTGATATATTCAGTGGGGGAATGTTGGAGTTAA
AGAAATACCCAACCGATAACTTGATAAAATCAGACAACTTGTGCATTGGG
CTTTTCCAGAAAAAATTCGTTCATAGGGGGTGGAGGATGAATTGTCCAGG
GGTAATTTTTTGTGTCCAAGGGGTTGATTTGATGTTTGTCCTGGGGAATA
ACCCGTGTCCAGGGGGTTTAAAATCAAAATGTCCAGGGGTGATTCATGAA
AAAATAATATATCCTCCACCCCCCATGAACGGATTTTTTCTGGAAAAGCC
CATTACAAGAGACCTTTTATTTAAAAATCCTAAACTTTTCTCGAAAACCA
AGGCGGAACGATTTCTTTCTTGGATTAACGATCTGGACGTTTATTAGGAA
CTTGAGATGGTCTAAAATTTGTCGACTATGCTTATTTTAGATCTCACTTG
TGGTTTATTGTGGAGAATTCTTTGATCGTTACAATATCGCAAGCATCCTG
TTATCTCCGCCATCCTAACATCAACGAAGGTGGAAAACAATTCTTGAAAA
GAGAACTTGGAAGTGAACTGGTAAGTTTTTGTTTTTCAAGAAAAAACTTT
CGAGAACTCAAATCGGTACACTCGAAACAATCCCACAGTGCATCGCTTTT
TTAGAAAAATGAAAAACTCCGCAACAACATAAAGCTGCAAGGTGCAACTA
GATTTTTCTGTACATCTACGCACTACAAAATACTTCAACACCGCTTTACG
CCTCTAAATTATCATAGAAATACCAAATTGAGTCAAATGGCAATTATTCG
TAGGATATTATTCCTCTGAAATTGAAATATTGCACCCAAGTCTTGACACA
AATATTGTTTGCTTGGCTGTTAATATTTTTTCGGACGTTGATGATTTCTC
ATTTTNTCCTCTGAGATTGAAATATTGCACCCAAGTCTTGACACAAATAT
TGTTTGCTTGGCTGTTAATATTTTTTCGGACGTTGATGGTTTCTCATTTT
CTTTTTTACCACAGACCAACATTCGACATGCTGTGCAACGTTATCGATCA
AGACGTGGTATCCCGCCCTCGCCCGAGTCCTCAGAACGCCTCTCCGCCTC
TTCGATGTCCTCGTTTCGTCGTTCTCCAAGCAAACTCTCATCTTCAATTA
GTCTCAACGAGGAAGAAGAAAACTCTGTCCTTAAACTGGTCGATACTTAT
ACTCGCTATTTACTACGATAATATTTTAATATTGTTTTGTATCCAGGCAA
TTTATTTGTTAGCAGGTTTTTTATCGGAAAGAAATTCAAAGAAAAGTAAT
TTGCTTATTGACTTTCATGATTTGACTTGAAAGAAACCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002282XLOC_002282Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004095-exon-sc0000039-1575043694:37279..37327TCONS_00004095-exon-sc0000039-1575043694:37279..37327Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:37052..37127TCONS_00004095-exon-sc0000039-1575043694:37052..37127Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:35818..35913TCONS_00004095-exon-sc0000039-1575043694:35818..35913Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:35416..35579TCONS_00004095-exon-sc0000039-1575043694:35416..35579Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:35106..35242TCONS_00004095-exon-sc0000039-1575043694:35106..35242Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:34698..34804TCONS_00004095-exon-sc0000039-1575043694:34698..34804Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:34139..34276TCONS_00004095-exon-sc0000039-1575043694:34139..34276Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:33780..33848TCONS_00004095-exon-sc0000039-1575043694:33780..33848Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:33557..33625TCONS_00004095-exon-sc0000039-1575043694:33557..33625Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:33205..33345TCONS_00004095-exon-sc0000039-1575043694:33205..33345Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:32821..32958TCONS_00004095-exon-sc0000039-1575043694:32821..32958Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:32384..32458TCONS_00004095-exon-sc0000039-1575043694:32384..32458Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:32001..32146TCONS_00004095-exon-sc0000039-1575043694:32001..32146Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:31490..31568TCONS_00004095-exon-sc0000039-1575043694:31490..31568Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:30056..30187TCONS_00004095-exon-sc0000039-1575043694:30056..30187Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:29586..29668TCONS_00004095-exon-sc0000039-1575043694:29586..29668Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:28808..28937TCONS_00004095-exon-sc0000039-1575043694:28808..28937Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1575043694:28038..28363TCONS_00004095-exon-sc0000039-1575043694:28038..28363Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:37279..37327TCONS_00004095-exon-sc0000039-1510915933:37279..37327Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:37052..37127TCONS_00004095-exon-sc0000039-1510915933:37052..37127Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:35818..35913TCONS_00004095-exon-sc0000039-1510915933:35818..35913Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:35416..35579TCONS_00004095-exon-sc0000039-1510915933:35416..35579Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:35106..35242TCONS_00004095-exon-sc0000039-1510915933:35106..35242Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:34698..34804TCONS_00004095-exon-sc0000039-1510915933:34698..34804Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:34139..34276TCONS_00004095-exon-sc0000039-1510915933:34139..34276Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:33780..33848TCONS_00004095-exon-sc0000039-1510915933:33780..33848Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:33557..33625TCONS_00004095-exon-sc0000039-1510915933:33557..33625Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:33205..33345TCONS_00004095-exon-sc0000039-1510915933:33205..33345Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:32821..32958TCONS_00004095-exon-sc0000039-1510915933:32821..32958Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:32384..32458TCONS_00004095-exon-sc0000039-1510915933:32384..32458Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:32001..32146TCONS_00004095-exon-sc0000039-1510915933:32001..32146Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:31490..31568TCONS_00004095-exon-sc0000039-1510915933:31490..31568Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:30056..30187TCONS_00004095-exon-sc0000039-1510915933:30056..30187Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:29586..29668TCONS_00004095-exon-sc0000039-1510915933:29586..29668Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:28808..28937TCONS_00004095-exon-sc0000039-1510915933:28808..28937Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1510915933:28038..28363TCONS_00004095-exon-sc0000039-1510915933:28038..28363Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:37279..37327TCONS_00004095-exon-sc0000039-1491911889:37279..37327Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:37052..37127TCONS_00004095-exon-sc0000039-1491911889:37052..37127Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:35818..35913TCONS_00004095-exon-sc0000039-1491911889:35818..35913Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:35416..35579TCONS_00004095-exon-sc0000039-1491911889:35416..35579Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:35106..35242TCONS_00004095-exon-sc0000039-1491911889:35106..35242Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:34698..34804TCONS_00004095-exon-sc0000039-1491911889:34698..34804Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:34139..34276TCONS_00004095-exon-sc0000039-1491911889:34139..34276Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:33780..33848TCONS_00004095-exon-sc0000039-1491911889:33780..33848Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:33557..33625TCONS_00004095-exon-sc0000039-1491911889:33557..33625Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:33205..33345TCONS_00004095-exon-sc0000039-1491911889:33205..33345Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:32821..32958TCONS_00004095-exon-sc0000039-1491911889:32821..32958Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:32384..32458TCONS_00004095-exon-sc0000039-1491911889:32384..32458Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:32001..32146TCONS_00004095-exon-sc0000039-1491911889:32001..32146Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:31490..31568TCONS_00004095-exon-sc0000039-1491911889:31490..31568Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:30056..30187TCONS_00004095-exon-sc0000039-1491911889:30056..30187Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:29586..29668TCONS_00004095-exon-sc0000039-1491911889:29586..29668Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:28808..28937TCONS_00004095-exon-sc0000039-1491911889:28808..28937Clytia hemisphaericaexon
TCONS_00004095-exon-sc0000039-1491911889:28038..28363TCONS_00004095-exon-sc0000039-1491911889:28038..28363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:28038..37327 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.6261	17.0547	17.9232	22.6303	3.73e-10	0.000160873	0	0.136237	0	0	0	4.09458e-10	0	0	6.97378	10.235	10.7304	6.46672	4.27651	3.70507	4.31223	6.28764	11.1538	6.8547	0	5.74247e-06	3.82935	5.614	7.01995	4.81962
Blast
[Close]
BLAST of TCONS_00004095 vs. Swiss-Prot (Human)
Match: NU188 (Nucleoporin NUP188 homolog OS=Homo sapiens GN=NUP188 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.944e-31
Identity = 116/402 (28.86%), Postives = 197/402 (49.00%), Query Frame = 3 
Query:  729 IQNLLRDMTINLQKRIDLEYVETVLRFMLSSSQKDLIAEHLHQCGIGKFKCLNLNNV------------QAARKSSQVAR--EIWSLILSLTARLLKKLRFTFLQVAVDFLGAYEEDIFQSMNLMEEMTNGSCLLISEQIAILCFELAHYDHDIEFLLPDIHQKLKYGVAQMVKLSVALLARQKLITHLTEFKSTDDLHQMIRGTKEPSPVSFRSDSVRSGYSTADFEKLTGLA-EVAQNRLISILCYCLGSLRRITPSVVEAILDEGMDIDSFTPLVDFKFNSPTLEMEDNPTFGSLLACVNIALKMIYKLVQGDSEHVTPEKDVFNTSLPTDADKQR---SHLWFIVENSLIVTISQASCYLRHPNINEGGKQFLKRELGSELTNIRHAVQRYRSRRGIP 1880
            +  LL  + ++L+ + +L + E  L  +L+ ++    A  +   GI +  CL L +V             A+RKS        ++ L +SL  +LLK LR+ FL  A+DF+G ++E   Q +N +  + + +CL  ++       +L+++  +  F LP + + ++  +  + +   +LL  +K++ H  + K+ D L   +    +  P +  +    S    AD E     A    Q  L+ IL   L +LR  TP V + +LD+ +D+  +  L    F +PT + E  P+FG+LLA VN+AL M+ +L +        E       L T A+  R   S L F +EN   + ISQA  YLR P ++   KQ +K+EL SEL+ +  ++ RY  RRG P
Sbjct: 1313 LPTLLTTLEVSLRMKQNLHFTEATLHLLLTLARTQQGATAVAGAGITQSICLPLLSVYQLSTNGTAQTPSASRKSLDAPSWPGVYRLSMSLMEQLLKTLRYNFLPEALDFVGVHQERTLQCLNAVRTVQSLACLEEADHTVGFILQLSNFMKEWHFHLPQLMRDIQVNLGYLCQACTSLLHSRKMLQHYLQNKNGDGLPSAVAQRVQRPPSAASAAPSSSKQPAADTEASEQQALHTVQYGLLKILSKTLAALRHFTPDVCQILLDQSLDLAEYNFLFALSFTTPTFDSEVAPSFGTLLATVNVALNMLGELDKKK------EPLTQAVGLSTQAEGTRTLKSLLMFTMENCFYLLISQAMRYLRDPAVHPRDKQRMKQELSSELSTLLSSLSRY-FRRGAP 1707
The following BLAST results are available for this feature:
BLAST of TCONS_00004095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NU1883.944e-3128.86Nucleoporin NUP188 homolog OS=Homo sapiens GN=NUP1... [more]
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