TCONS_00004073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004073
Unique NameTCONS_00004073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1154

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004073 ID=TCONS_00004073|Name=TCONS_00004073|organism=Clytia hemisphaerica|type=transcript|length=1154bp
aaacaatggACCTCGAAAATCACTTGCAAAAATCTTCCAACAACTTTTGT
TTAGCTTCTCGTCCCTTCCCTCTACTCTCATTTTTGTaactttgttttta
tgaaatataatattttatcTCAGTTTGTCATGTCATCTGCGTTCATAAAG
CTAAATTATAAAAACCAAACTTTCTTGTCAGTCGGTCATTTCTTTGCTCT
AGACGTTGATGAATGTTTATTACAAACGTTCGATTGTCACACTGATTCCA
CGTGTCACAATCTGATTGGCTCATATTCCTGCACGTGTAACAAGGGTCTT
ATGGGAGACGGAAAGTATTGTGAAGATGTCAATGAATGTCTGACGTCATC
AACAAATAATTGTGATAGTAACGCCATATGCACCAATCAGTATTCATCAT
ATAAATGCGCATGCGCAGAAGGATATGTTGGTAACGGAACTTTTTGTGAA
GATTTGAATGAATGTTTAAACACCTCGACCCATAATTGTCACCCAGATGC
ACAATGTGTGAATGAGCAAGGCACTTTCTCTTGTCATTGTTTACAAGGGT
TTCTGGGTAATGGCACGCAATGCATTGACGAAGATGAATGCTTGGTTAGA
GAACCATGCCATAAAGATGCTTGGTGTTTGAACACATACGGTTCTTTTGT
GTGCACCTGTCGTCAAGGTTACCATGGTAACTCAACGCATTGCCAAGGTA
TCTTATCACATCCATAAATTCATACatttaaaaaatctgaaataatCTAT
AAATACATTGTCTGGTTATTACTTCATTCATACACGCATTCTAAAGTAGG
GCGCTTTTAGATGTGCTTTCATTCACCTATCACACACAACCACACACGTA
TTCTAACAGACGGTTCCCCTCTCAGCGGGGGACTTGTCGAGAACATTCTC
CCATCTCTCTATTGACAGATATCGATGAATGTTCAAGAAACAATTCCGTG
TGTGACCACAATGCATTCTGTACCAACACCAAAGGTTCATTTTTATGTTC
GTGTAACCATGGTTATTCAGGGGATGGTTTCATTTGCCTTGATATAAATG
AATGTCAGAGCAACCAACACGATTGTCATCCAGAAGCTTATTGTTTGAAC
GGAAACGGctcttttgaatgtttttgtaaaCATCCACAGTTTATAGGAAA
TGGC
Run BLAST on NCBI

transcript from alignment at sc0000039:727820..728973+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004073 ID=TCONS_00004073|Name=TCONS_00004073|organism=Clytia hemisphaerica|type=transcript|length=1154bp|location=Sequence derived from alignment at sc0000039:727820..728973+ (Clytia hemisphaerica)
aaacaatggACCTCGAAAATCACTTGCAAAAATCTTCCAACAACTTTTGT
TTAGCTTCTCGTCCCTTCCCTCTACTCTCATTTTTGTaactttgttttta
tgaaatataatattttatcTCAGTTTGTCATGTCATCTGCGTTCATAAAG
CTAAATTATAAAAACCAAACTTTCTTGTCAGTCGGTCATTTCTTTGCTCT
AGACGTTGATGAATGTTTATTACAAACGTTCGATTGTCACACTGATTCCA
CGTGTCACAATCTGATTGGCTCATATTCCTGCACGTGTAACAAGGGTCTT
ATGGGAGACGGAAAGTATTGTGAAGATGTCAATGAATGTCTGACGTCATC
AACAAATAATTGTGATAGTAACGCCATATGCACCAATCAGTATTCATCAT
ATAAATGCGCATGCGCAGAAGGATATGTTGGTAACGGAACTTTTTGTGAA
GATTTGAATGAATGTTTAAACACCTCGACCCATAATTGTCACCCAGATGC
ACAATGTGTGAATGAGCAAGGCACTTTCTCTTGTCATTGTTTACAAGGGT
TTCTGGGTAATGGCACGCAATGCATTGACGAAGATGAATGCTTGGTTAGA
GAACCATGCCATAAAGATGCTTGGTGTTTGAACACATACGGTTCTTTTGT
GTGCACCTGTCGTCAAGGTTACCATGGTAACTCAACGCATTGCCAAGGTA
TCTTATCACATCCATAAATTCATACatttaaaaaatctgaaataatCTAT
AAATACATTGTCTGGTTATTACTTCATTCATACACGCATTCTAAAGTAGG
GCGCTTTTAGATGTGCTTTCATTCACCTATCACACACAACCACACACGTA
TTCTAACAGACGGTTCCCCTCTCAGCGGGGGACTTGTCGAGAACATTCTC
CCATCTCTCTATTGACAGATATCGATGAATGTTCAAGAAACAATTCCGTG
TGTGACCACAATGCATTCTGTACCAACACCAAAGGTTCATTTTTATGTTC
GTGTAACCATGGTTATTCAGGGGATGGTTTCATTTGCCTTGATATAAATG
AATGTCAGAGCAACCAACACGATTGTCATCCAGAAGCTTATTGTTTGAAC
GGAAACGGctcttttgaatgtttttgtaaaCATCCACAGTTTATAGGAAA
TGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002276XLOC_002276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004073-exon-sc0000039-1491911889:727820..728973TCONS_00004073-exon-sc0000039-1491911889:727820..728973Clytia hemisphaericaexon
TCONS_00004073-exon-sc0000039-1510915933:727820..728973TCONS_00004073-exon-sc0000039-1510915933:727820..728973Clytia hemisphaericaexon
TCONS_00004073-exon-sc0000039-1575043694:727820..728973TCONS_00004073-exon-sc0000039-1575043694:727820..728973Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:727820..728973 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.163836	0.306756	0.645306	1.14462	0	0.625409	0	0	0.115217	0.0534598	0.0834087	0.0505239	0.0890989	0	0	0	0.225502	0.314539	0	0	0.171126	0	0	0.176816	0.550111	0.283156	0.21681	0.224523	0	0
Blast
[Close]
BLAST of TCONS_00004073 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.021e-31
Identity = 68/180 (37.78%), Postives = 89/180 (49.44%), Query Frame = 1 
Query:  202 DVDECLLQTFDCHTDSTCHNLIGSYSCTCNKGLMGDGKYCEDVNECLTSSTNNCDSNAICTNQYSSYKCA--CAEGYVG--NGTFCEDLNECLNTSTHNCHPDAQCVNEQGTFSCHCLQGF--LGNGTQCIDEDEC-LVREPCHKDAWCLNTYGSFVCTCRQGYH--GNSTHCQGILSHP 714
            D++EC  ++  CH    C N IGS+ C C  G    G+ C DVNEC     N C  +  C N    YKC   C  G     NGT C D++EC +  TH C  +  C N +G++ C C +G+   G G  C+D +EC  V +PC     C NT GSF C C  G H  G+   C G+   P
Sbjct: 5192 DINECQ-ESSPCH--QRCFNAIGSFHCGCEPGYQLKGRKCMDVNEC---RQNVCRPDQHCKNTRGGYKCIDLCPNGMTKAENGT-CIDIDECKD-GTHQCRYNQICENTRGSYRCVCPRGYRSQGVGRPCMDINECEQVPKPCAHQ--CSNTPGSFKCICPPGQHLLGDGKSCAGLERLP 5361

HSP 2 Score: 51.6026 bits (122), Expect = 1.021e-31
Identity = 40/106 (37.74%), Postives = 51/106 (48.11%), Query Frame = 3 
Query:  819 SFTYHTQPHTYSNRRFPSQRGTCREHSPISLLT--DIDECSRNNSVCDHNAFCTNTKGSFLCSCNHGY--SGDGFICLDINECQSNQHDCHPEAYCLNGNGSFECF 1124
            S++ +    T  +R   + R TC E S  S  T  DIDEC  N   C H   C NT GS+ C C  GY  + +G  C DI+EC      C P   C N  GS++C 
Sbjct: 5397 SYSEYRNSRTSLSRTRRTIRKTCPEGSEASHDTCVDIDEC-ENTDACQHE--CKNTFGSYQCICPPGYQLTHNGKTCQDIDECLEQNVHCGPNRMCFNMRGSYQCI 5499

HSP 3 Score: 109.383 bits (272), Expect = 2.478e-25
Identity = 67/166 (40.36%), Postives = 78/166 (46.99%), Query Frame = 1 
Query:  202 DVDECLLQTFDCHTDSTCHNLIGSYSCT--CNKGL--MGDGKYCEDVNECLTSSTNNCDSNAICTNQYSSYKCACAEGYVGNGTFCEDLNECLNTSTHNCHPDAQCVNEQGTFSC--HCLQGFLG--NGTQCIDEDECL-VREPCHKDAWCLNTYGSFVCTCRQGY 672
            D+DEC L    CH    C N IGSY C   C  G     DG  C+D+NEC  SS   C     C N   S+ C C  GY   G  C D+NEC     + C PD  C N +G + C   C  G     NGT CID DEC      C  +  C NT GS+ C C +GY
Sbjct: 5147 DIDECALGRHTCHAGQDCDNTIGSYRCVVRCGSGFRRTSDGLSCQDINECQESSP--CHQR--CFNAIGSFHCGCEPGYQLKGRKCMDVNEC---RQNVCRPDQHCKNTRGGYKCIDLCPNGMTKAENGT-CIDIDECKDGTHQCRYNQICENTRGSYRCVCPRGY 5304

HSP 4 Score: 106.686 bits (265), Expect = 1.721e-24
Identity = 63/168 (37.50%), Postives = 87/168 (51.79%), Query Frame = 1 
Query:  169 TFLSVGHFFALDVDECLLQTFDCHTDSTCHNLIGSYSCTCNKGLM--GDGKYCEDVNECLTSSTNNCDSNAICTNQYSSYKCA--CAEGY--VGNGTFCEDLNECLNTSTHNCHPDAQCVNEQGTFSCHCLQGFLGNGTQCIDEDECLVREPCHKDAWCLNTYGSFVC 654
            T  SVG F A D DEC       H+   CHN +G+Y C+C KGL    DG+ C+D++EC     + C +   C N   SY+C   C  G+    +G  C+D+NEC  +S   CH   +C N  G+F C C  G+   G +C+D +EC  +  C  D  C NT G + C
Sbjct: 5097 TLDSVGPFCA-DEDECAAGNPCSHS---CHNAMGTYYCSCPKGLTIAADGRTCQDIDECALGR-HTCHAGQDCDNTIGSYRCVVRCGSGFRRTSDGLSCQDINECQESSP--CH--QRCFNAIGSFHCGCEPGYQLKGRKCMDVNECR-QNVCRPDQHCKNTRGGYKC 5254
The following BLAST results are available for this feature:
BLAST of TCONS_00004073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.021e-3137.78Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
back to top