TCONS_00004066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004066
Unique NameTCONS_00004066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length977

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004066 ID=TCONS_00004066|Name=TCONS_00004066|organism=Clytia hemisphaerica|type=transcript|length=977bp
CAAAATCAGTGTGTATAAGAAAATCTGGATATAAAATGATTTTCATAGGT
TTATGAATTCTGTctgttattttttaaagaacacccactcataaaatttt
gatagttTGATTACTCAGTAACTCACTGTTTTCTCTTCGTTTTTTGAACC
ACaatagaaaatgattttgatatcGAAAAGAACGTTTTCGTAAAGACAAT
TGCGGTCATGCGCACACTAAGAAAATGATCttcacttgaaataaaaaatt
ttaaatcaccTTTTCTTTTCAGTGCTCTTTCTTTATACTAGTTTTAATAT
TGCATAAGAataagaaattttctttcattcCATAATTTGGAGATTAATGA
ATATTTTCATCGAATTCGATCGAGACCAACGCAACTTAGACTTTTATCTT
CGAGTGTTCTTAGTGACAAGATGAATTTAGATTCTCAGTCGGTTTAAGTC
CAACTTATTCTTAGTTGGTTTGGCTTACCTAGATTTAATTTAGGTCGAAG
CTCTATCTGCTATACTTAATTATATACCAAACTGCTATACCTAATtatgt
aataatattttaataaagGTTTCTGGGTAAATTTTAACGTATTCTGAGTA
TCTGTAAATAGAATCaaatgtttttgttaatttgaaAGCTAATTCGAAAA
TGCTTTAATTATTTTACCGTTGAATCAACAAATGGATTAAGATGGTCGTC
TTTTTGTATGGGTTGTTTATGATAGCTGTGCTAATACAAAACGTTAACGG
ACAATGCGCCAGTGTGCTTACACGTACAGAATGGGCTGGCCAAATCAAAT
CACCTGACTATCCTTCATATCGGAAAAGTTTAGATTGCCGATGGATTATC
ATGGTCTCCCTTGGAAATACTGTCAATATTCAATTCAGTGATTTCTCTGT
AGGTTTCTTTCATactttaaggcttggggacacgagaagtttttttcgcg
ttggtgcaatgcaacatgctccatccc
Run BLAST on NCBI

transcript from alignment at sc0000039:719618..720906+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004066 ID=TCONS_00004066|Name=TCONS_00004066|organism=Clytia hemisphaerica|type=transcript|length=1289bp|location=Sequence derived from alignment at sc0000039:719618..720906+ (Clytia hemisphaerica)
CAAAATCAGTGTGTATAAGAAAATCTGGATATAAAATGATTTTCATAGGT
TTATGAATTCTGTctgttattttttaaagaacacccactcataaaatttt
gatagttTGATTACTCAGTAACTCACTGTTTTCTCTTCGTTTTTTGAACC
ACaatagaaaatgattttgatatcGAAAAGAACGTTTTCGTAAAGACAAT
TGCGGTCATGCGCACACTAAGAAAATGATCttcacttgaaataaaaaatt
ttaaatcaccTTTTCTTTTCAGTGCTCTTTCTTTATACTAGTTTTAATAT
TGCATAAGAataagaaattttctttcattcCATAATTTGGAGATTAATGA
ATATTTTCATCGAATTCGATCGAGACCAACGCAACTTAGACTTTTATCTT
CGAGTGTTCTTAGTGACAAGATGAATTTAGATTCTCAGTCGGTTTAAGTC
CAACTTATTCTTAGTTGGTTTGGCTTACCTAGATTTAATTTAGGTCGAAG
CTCTATCTGCTATACTTAATTATATACCAAACTGCTATACCTAATtatgt
aataatattttaataaagGTTTCTGGGTAAATTTTAACGTATTCTGAGTA
TCTGTAAATAGAATCaaatgtttttgttaatttgaaAGCTAATTCGAAAA
TGCTTTAATTATTTTACCGTTGAATCAACAAATGGATTAAGATGGTCGTC
TTTTTGTATGGGTTGTTTATGATAGCTGTGCTAATACAAAACGTTAACGG
TAAGTTAATTATCTTATAGAATAATTGCTGGCAGCAACTTTTGTCACCAA
ATTTTTCGATTGTTCCTTTACTGTTCTTTTATGATCAGGGACGTTGTTTC
TAGCTTGGTCTGTGATAGCTTGAAAGACTGTTGTGAATTCCTGAATTTAG
GACGATAACTAAATAATGTAGATATTCAAATATTCGCTGTAGATACTGGT
AGATAATCTGCCCTTGGGATCGATAAGTAAAAGGTCAAAATTGTGAATTC
CTTCCTTGCGTCGAAGAAATTCTTCATTGAcagtttctttataaacaaaC
AATATTTATAGGACAATGCGCCAGTGTGCTTACACGTACAGAATGGGCTG
GCCAAATCAAATCACCTGACTATCCTTCATATCGGAAAAGTTTAGATTGC
CGATGGATTATCATGGTCTCCCTTGGAAATACTGTCAATATTCAATTCAG
TGATTTCTCTGTAGGTTTCTTTCATactttaaggcttggggacacgagaa
gtttttttcgcgttggtgcaatgcaacatgctccatccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002275XLOC_002275Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004066-exon-sc0000039-1491911889:719618..720366TCONS_00004066-exon-sc0000039-1491911889:719618..720366Clytia hemisphaericaexon
TCONS_00004066-exon-sc0000039-1510915933:719618..720366TCONS_00004066-exon-sc0000039-1510915933:719618..720366Clytia hemisphaericaexon
TCONS_00004066-exon-sc0000039-1575043694:719618..720366TCONS_00004066-exon-sc0000039-1575043694:719618..720366Clytia hemisphaericaexon
TCONS_00004066-exon-sc0000039-1491911889:720679..720906TCONS_00004066-exon-sc0000039-1491911889:720679..720906Clytia hemisphaericaexon
TCONS_00004066-exon-sc0000039-1510915933:720679..720906TCONS_00004066-exon-sc0000039-1510915933:720679..720906Clytia hemisphaericaexon
TCONS_00004066-exon-sc0000039-1575043694:720679..720906TCONS_00004066-exon-sc0000039-1575043694:720679..720906Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:719618..720906 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0470361	0.0918057	0.0554337	0.268644	0.812876	0.397635	0.541336	0.342592	0.358626	0.146612	0.571223	0.314168	0.130183	0.0988531	0	0.0571891	0.210557	0.358596	0.403855	0.42715	0.420203	0.751086	0.161789	0.49705	0.302271	0.588904	0.0667399	0.069819	0.104494	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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