TCONS_00004056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004056
Unique NameTCONS_00004056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004056 ID=TCONS_00004056|Name=TCONS_00004056|organism=Clytia hemisphaerica|type=transcript|length=1316bp
GTCTTAATTTGGTGCGTAAAGACGGGGGTCAAAAACACGACAAGGTCATG
CTATATAAAGTGAATTTCATTACAATTTTAACATATCAGTGATTTTGCTT
TGATTGACGATAATGAAGTTATTAGTTGTATTCGCTGCTCTTATTGCTTT
TGCTGGAGCATGCTCTGACAAGAGTTCATATTGTCGGTTCTTCCCCCGTG
CACAATGCTCGACGAATGCTATTGTTCGTATGCAATGTCCAAAATACTGT
GGAACGTGCGGTGGCAGTGGAAGTGGTAGCAGCGGCTCATGTCGAGATCT
CTCCTCAAATTGTTACATGTTCCACTCTCAGTGTAGCAACTCTTACGTCA
GACAAAGATGCCCAAAGACCTGCAACGCCTGCAGTGGTGGCGGAAGTGGC
GGTAGTGGCGGTGTTCCAAGTTGCGCTGGCAAAGGCACTGGGTTACCCTC
AGGTGCACAATGCGGTCAAGTCAAAGTCAGTTCATCAAGAGTCATTGCTG
GAGAGAACGCAAAAGCTGGAGCATGGCCATGGCAAATTGCCATGACAATG
AAAGATGGGCGTTTTTTCTGTGGAGGATCTTTGGTCAACGCCAAATGGGT
GGTCACTGCATCTCATTGCATCGATAAACAACAAGCTTCCAATATCCAAA
TCGTCTTAGGCGGTCACGATTTAAACCATCCATCTGGTAGCGAACAAACT
CGAAATGTGAAACGCCTTATTATGCATCCTTCATACGGACGCTTGAACAA
TGATATTGCATTGATCGAACTCGACCGTCCAGTAATGTTCACTGATCGTA
TACAGCCTGTGTGTTTGCCAGAGCCTACAGAACAACCAGCTGTGGGAAGC
AAATGCTACTTGACTGGTTGGGGAAAGATTCAACATCCAGGAAGCTCACA
TCCAATCCTTCAACAAGTTGGCCTAACTATACAAGAAAATTCTCAATGTA
ACAGATTGAACTCAAAATACGTCCCCATCTCACAACAAATGGTATGCGCG
GCCAACCCAGGCACACGACAAATGGGTTGTCATGGTGACAGCGGTGGCCC
ACTTGTCTGTCAACAGCCAGATGGTAGCTTCAAACTTCATGGGGCTGTCA
GTTGGGGCTCACCAACATGTACGGCTAGTGACGCTTGGACTGTTTTTGCT
CGTGTCTCCGTTTTCCGTAATTGGTTGAACTGCTATATCAACAACTAGAT
TGGTTAAATTAAcgattatattatttttttagcaaagtTTTCTTTCTCAA
CGAACAAAGATCGCAAAATTAGAACATAAAAGACAGAGATAATACATCAA
ATTATATCCACTTAAG
Run BLAST on NCBI

transcript from alignment at sc0000039:635782..642446+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004056 ID=TCONS_00004056|Name=TCONS_00004056|organism=Clytia hemisphaerica|type=transcript|length=6665bp|location=Sequence derived from alignment at sc0000039:635782..642446+ (Clytia hemisphaerica)
GTCTTAATTTGGTGCGTAAAGACGGGGGTCAAAAACACGACAAGGTCATG
CTATATAAAGTGAATTTCATTACAATTTTAACATATCAGTGATTTTGCTT
TGATTGACGATAATGAAGTTATTAGTTGTATTCGCTGCTCTTATTGCTTT
TGCTGGAGGTAGATATGACTGCTCGCTTATAATTCTATTGCTAACAACGT
TTATACTCGAGCCATCGATATGactgcccagctggcacacaacgttgttt
caacgtttatctaacgttgtatggacgttgtgaatgctagaaaaacgttg
aaacaacgttgtgtgccagctgggtgctCGCTTAAAATTATATCGCTAAA
AACGTTTATACTCGAGCCATCGAGTAAACCTGAGaaaccttatcggccct
ttttacaccacCCCTTATTGGTGTTATATTTTCGTCGCTAGCGTAATGAG
GGCCAGCGTAACGGATCGAAATTAAATTAGGGCTGGGCTAAAAATGAGCT
TTGGCGTGAGGGCCGTTGTAAAAAGAGCCGATAAAAAGCACATTAAAACT
CTATTTCGGTACGGTCTGAGCTCCAAAACTTCTATGAACATCTCTTTTTC
TCAAGATTTGAAATATATGATGATGCTACCTTTCTTTTCAGCATGCTCTG
ACAAGAGTTCATATTGTCGGTTCTTCCCCCGTGCACAATGCTCGACGAAT
GCTATTGTTCGTATGCAATGTCCAAAATACTGTGGAACGTGCGGTGGCAG
TGGAAGTGGTAGCAGCGGCTGTGAGTGTGTTCTTCTCTGAATATTTTCCC
CCTCCTGTATTGTAGTTTTGAGATTGTTAGGTCAACCTCCCCATAAGAAC
CCTGGAAAGCTCGAGGTCCttgacttttttctaaattcctaacttttttc
CGATAGGCTGAATTTTCCGAGTGAATTTCTGTATCGTTATTAGGATCATA
TTGCTCGAGTAAAAAAGGGCAACTTTCCGTCTGGGATCTAAAGTGGTCAG
GGGCTATGGCCTTCATCACCCAGTATGGTTGAAGGTTCATTTTCGATTTT
ATTTaatgcataatttcaatttgttGTCGTATTAGCATGTCGAGATCTCT
CCTCAAATTGTTACATGTTCCACTCTCAGTGTAGCAACTCTTACGTCAGA
CAAAGATGCCCAAAGACCTGCAACGCCTGCAGTGGTGGCGGAAGTGGCGG
TAGTGGCGGTGTTCCAAGTAAGTGTTTAGACTTTCACCAAAGTCTGTAAA
AACCTCGGCCttgaagccttttgtttctttccattggaaaacttgaactt
gcgtttgTTTTGCTCGTTTGATCAAATCTCGAACCAATGCCAAGAGGAGA
ACTTGAAAActtgatcaaaaactgagcacaAAGGGCACTATAAGGGTCGA
AATGAACAAAtgtaaaaaatattacactctaagggtgtaaaatttggaaa
atgttgCCATATTTCGCCTGAAaacggtcgtttttgaatcgagtgccccc
ccccaggCCATGGAAATGTCGATAAAAAAATCTGACTTCTTCGCCTAAAC
TGGAAAGAGTAGTAATACCAATAACAAAGGATATGTTGGGGCTCTCCATA
AAGCACACAAGTCAACTTGATTCATAAAACAACCACATCCAGATCcttga
aaaatattctccaTTCTACCTTTGAAGGTTGCGCTGGCAAAGGCACTGGG
TTACCCTCAGGTAAGAATTACATTAAAATTCCAAGAAACTCGACCTAAAA
ATGGAAAGATAAAATGGACTCTTTTTGTCTTGGATATATATATCtaagaa
tttcttttcttttgaagcATTTTATCAAGTCTAGCGAGTTGAAATAAAAC
AAGTCCCTTACCTAATTTAAATCAATTAACTTGCAAATAAGTTCACATAC
TTTCGAAGAAGATGAAATAACTGATAACTTCTGTCTATGTATATTTCTAC
TCAAATTTAGGTGCACAATGCGGTCAAGTCAAAGTCAGTTCATCAAGAGT
CATTGCTGGAGAGAACGCAAAAGCTGGAGCATGGCCATGGCAAATTGCCA
TGACAATGAAAGATGGGCGTTTTTTCTGTGGAGGATCTTTGGTCAACGCC
AAATGGGTGGTCACTGCATCTCATTGCATCGATAAACAACAAGCTTCCAA
TATCCAAATCGTCTTAGGTACACGATAGTTATTTTCTAAGTAATCTAACA
ACCTGTGAATAGCTTCTTCGCCCTTTTTAAAGTCTAACATCACGTGACTA
TGGAGCGCCAAAAGAACAATAATAAATTCACTTATCTTTTGGCTATCTTT
ACAACAGAGTCCCACGGGATATATAGTCGTAACCTTTTAATAATGTCGAG
GTCGAGCTTTACAGAGAAAATCCGTGAGTAGTTGTTTAGAAATGTTGAGT
TTTTATCTGACGCAATATACCACTAAATCTCAAGATACaaaatgaaaagg
tattttgGAAGAACACGTGCTTTCTACAGGAAAATAGTACAAGCCAAAAC
TCTCATCCTTAAAAGGCAATCTTTTCGTTACAGGCGGTCACGATTTAAAC
CATCCATCTGGTAGCGAACAAACTCGAAATGTGAAACGCCTTATTATGCA
TCCTTCATACGGACGCTTGAACAATGATATTGCATTGATCGAACTCGACC
GTCCAGTAATGTTCACTGATCGTATACAGCCTGTGTGTTTGCCAGAGCCT
ACAGAACAACCAGCTGTGGGAAGCAAATGCTACTTGACTGGTAAGAATCT
CTTTCCATCAAACCTTTCGTCAAAGATTATAACATCCCTGTCTAGCTAAC
ATGCCGgaaaatttgttaatttttctaatttaaggcatggcaataaataa
ttattttggaagCTACGCGTGAAAAAATAGAGAAGAATTTAGTTACGATT
CAGGCATGTAAAATACGCGTTAATGATTAAGGAAATTCAAGTCTAAAATT
TAAATCTAAGTTTTAATGTCAAAAGCTTGATATGCGCTATAATTTAATAA
TGCAAAACTTAGCCCACGTCTTAATATAGTAAGATTAATTGGGTTTTTTT
GGAAGAGTAcgctttaaattaaaaaaagttacaatatCTTGTATGATTTA
tctatttttaaggttttgtattgctttatgtttttatttctgTTCTGTCA
CGCTTTTTTCACATAAAATTGAGGAATGATAGAatttgttggacctacct
ggaggtcctataaattaacctttgtccgtctgttaccctgcttttctcga
gattggctcattaattTGTTCCgcatttttgcataaagatgtgtattagc
actgcccaaaaaaaaaaatccaggccaaaaatgccggaaatatgccggga
aaaccggctttttggcattttctagagatttcatcatttgtttttttctg
aattttcgaACTAAGATGTAAATCagcaatgcctaaaatatgacctagtc
cgattttcgatggaaatttttttctggccgaaaatgacagaaatatgccg
gaaatcaccgtttttgcagatttcatTGGATCTTTATaattcatattttt
gtttttcaaaaaaaagcatTATAATAAAATGCCCACGATTCAgtatggtt
caattttcaatgaaactgattttggtagcCGGAACAGCCGAAGATCACTA
GGAAACCGTTCGCTCGTCCGTTCTTTTTTCACGATCTTTTCCATCATCGC
TTTAAACTACAGTCGACTTTCCATAACTTGAACCTCCTCAACTCAATTAT
CTCCATAAACTCGAAAGATTTTTTCGGTCTCTTGAGAAGATTCTTAGACT
ATTCTGCCTCTCTATATCTCGAATTTCCATAACTGGAACAATTACTGATT
ATCCCCTGGGCGTTCCAGCACTCGACTATATTACACTTCCCTACTTTAtt
ttatttcgtattttcaacactttctctccttgagNNNNNNNNNNNNNNNN
NNccaaaaatgctggaaatatgccgggaaaaccggctttttggcattttc
tagagatttcatcatttgtttttttctgaattttcgaACTAAGATGTAAA
TCagcaatgcctaaaatatgacctagtccgattttcgatggaaatttttt
tctggccgaaaatgacagaaatatgccggaaatcaccgtttttgcagatt
tcatTGGATCTTTATaattcatatttttgtttttcaaaaaaaagcatTAT
AATAAAATGCCCACGATTCAgtatggttcaattttcaatgaaactgattt
tggtagcCGGAACAGCCGAAGATCACTAGGAAACCGTTCGCTCGTCCGTT
CTTTTTTCACGATCTTTTCCATCATCGCTTTAAACTACAGTCGGCTTCCC
ATAACTTGAACCTCCTCAACTCAATTATCTCCATAAACTCGAAAGATTTT
TTCGGTCTCTTGAGAAGATTCTTAGACTATTCTGCCTCTCTATATCTCGA
ATTTCCATAACTGGAACAATTACTGATTATCCCCTGGGCGTTCCAGCACT
CGACTATATTACACTTCCCTACTTTAttttatttcgtattttcaacactt
tctctccttgaggtcagatctctgatcttcaccatatatattcATCAGGT
TTGTCCAATCAGCGTTCcggcttgttttttttttttggtttagtCGATTG
ATTGTAcattattttatagatttttttttctggttttGACAAGTTTTTGG
TTTGTtgggtttgaaaatttacacacGTGTATGAAACACTCAAAAGGAAA
ACTCGTTGTTATCGAAACAATTTTTTACCTACTATGGTCAGAGCCATTTT
ACAGAATGAGTCgtcttattttttgaataaatacatATTCTTGATCTAAA
CTGATAAATAATTTTCAGGGTTAACGAGAAGGAGAGATGACTGAGTGGTC
TGTGGTATCAGACCTCAACCATTTTACCGAAATATCATGGTTATTTGAAA
AGAGAATTTGATAGATTCAGCATCGccttttataaagtttttaaaatagt
TGTATCTATTTCGAGTAGAACTTTCTTGGAGTGTTATTGTTTGAGATGCC
TTGTAAACTTTTTATAAGcttttgaggctgaaatttgtaAAAAGATCTTG
AGAAATTATgtactgaaaatgaaatcaatGAGACAGGGGGGTATACAACg
aatagaaattgaaaataatctaaggctgaaaattaaattttgctaaGTAT
GACGAGCCTCAGTTTTAATTTCCCGTATGCTTCTAAACCTTGTGGCTTGT
TTCTATGGCGGTGGTTAAGCAGAAAATGGCACTCTCATCGgaggtttttt
attttttggcgagCCTTCTTCATAAGTTTTCATCTAGGAGAAAATGCAAA
CGAGAGAAATTTTGAACTATGAAAATTCATTGGAAGCAGTCCCAAGCCat
ggtttttcaaaatttattttttgatagcAGCACCTGAAAAGTCTTCAAGT
AGTGCCCATTCTCCGAGGGAACTGCTGCGGAGGACACTGACCACTCCCAT
TACACCTTCACAAAACCATGACAAAATGTTTTAACTTTATAAAAGATTTA
AACAAGACTAGTAATGATGCTGATAAGActcattcatttttatttaacaa
CAGGCTGGGGAAAGATTCAACATCCTGGAAGCTCACATCCAATCCTTCAA
CAAGTTGGCTTAACTATACAAGAAAATTCTCAATGTAACAGATTGAACTC
AAAATACGTCCCCATCTCACAACAAATGGTATGCGCGGCCAACCCAGGCA
CACGACAAATGGGTTGTCATGGTGACAGCGGTGGCCCACTTGTCTGTCAA
CAGCCAGATGGTAGCTTCAAACTTCATGGGGCTGTCAGTTGGGGCTCACC
AACATGTACGGCTAGTGACGCTTGGACTGTTTTTGCTCGTGTCTCCGTTT
TCCGTAATTGGTTGAACTGCTATATCAACAACTAGATTTGTTAAATTAAC
GANGAATGCAAACGAGAGAAATTTTGAACTATGAAAATTCATTAGAAGCA
GTCCCAAGCCatggtttttcaaaatttattttttaatagcAGCACCTGAA
AAGTCTTCAAGTAGTGCCCATTCTCCGAAGGAACTGCTGCGGAGGACACT
GACCACTCCCATTACACCTTCACAAAACCATGACAAAATGTTATAAGTTT
ATAAGAGCTTTAAACAAGACTAGTAATGATGCTGATAAGActcattcatt
tttatttaacaaCAGGTTGGGGAAAGATTCAACATCCAGGAAGCTCACAT
CCAATCCTTCAACAAGTTGGCCTAACTATACAAGAAAATTCTCAATGTAA
CAGATTGAACTCAAAATACGTCCCCATCTCACAACAAATGGTATGCGCGG
CCAACCCAGGCACACGACAAATGGGTTGTCATGGTGACAGCGGTGGCCCA
CTTGTCTGTCAACAGCCAGATGGTAGCTTCAAACTTCATGGGGCTGTCAG
TTGGGGCTCACCAACATGTACGGCTAGTGACGCTTGGACTGTTTTTGCTC
GTGTCTCCGTTTTCCGTAATTGGTTGAACTGCTATATCAACAACTAGATT
GGTTAAATTAAcgattatattatttttttagcaaagtTTTCTTTCTCAAC
GAACAAAGATCGCAAAATTAGAACATAAAAGACAGAGATAATACATCAAA
TTATATCCACTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002272XLOC_002272Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004056-exon-sc0000039-1491911889:635782..635939TCONS_00004056-exon-sc0000039-1491911889:635782..635939Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1510915933:635782..635939TCONS_00004056-exon-sc0000039-1510915933:635782..635939Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1575043694:635782..635939TCONS_00004056-exon-sc0000039-1575043694:635782..635939Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1491911889:636423..636551TCONS_00004056-exon-sc0000039-1491911889:636423..636551Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1510915933:636423..636551TCONS_00004056-exon-sc0000039-1510915933:636423..636551Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1575043694:636423..636551TCONS_00004056-exon-sc0000039-1575043694:636423..636551Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1491911889:636867..636998TCONS_00004056-exon-sc0000039-1491911889:636867..636998Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1510915933:636867..636998TCONS_00004056-exon-sc0000039-1510915933:636867..636998Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1575043694:636867..636998TCONS_00004056-exon-sc0000039-1575043694:636867..636998Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1491911889:637459..637491TCONS_00004056-exon-sc0000039-1491911889:637459..637491Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1510915933:637459..637491TCONS_00004056-exon-sc0000039-1510915933:637459..637491Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1575043694:637459..637491TCONS_00004056-exon-sc0000039-1575043694:637459..637491Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1491911889:637742..637948TCONS_00004056-exon-sc0000039-1491911889:637742..637948Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1510915933:637742..637948TCONS_00004056-exon-sc0000039-1510915933:637742..637948Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1575043694:637742..637948TCONS_00004056-exon-sc0000039-1575043694:637742..637948Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1491911889:638315..638521TCONS_00004056-exon-sc0000039-1491911889:638315..638521Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1510915933:638315..638521TCONS_00004056-exon-sc0000039-1510915933:638315..638521Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1575043694:638315..638521TCONS_00004056-exon-sc0000039-1575043694:638315..638521Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1491911889:641997..642446TCONS_00004056-exon-sc0000039-1491911889:641997..642446Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1510915933:641997..642446TCONS_00004056-exon-sc0000039-1510915933:641997..642446Clytia hemisphaericaexon
TCONS_00004056-exon-sc0000039-1575043694:641997..642446TCONS_00004056-exon-sc0000039-1575043694:641997..642446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:635782..642446 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0183494	0	0	0	0	0	0.159366	0.237382	0.327531	0.264222	5.9678	1.88299	0	0.193531	0	0	0	0	0	0	0.41826	0.474168	56.3572	75.3411	0.0854399	0	0	0
Blast
[Close]
BLAST of TCONS_00004056 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.888e-46
Identity = 95/235 (40.43%), Postives = 130/235 (55.32%), Query Frame = 2 
Query:  482 SSRVIAGENAKAGAWPWQIAMTMKDGRFFCGGSLVNAKWVVTASHCIDKQQASNIQIVLGGHDLNHPSGSEQTRNVKRLIMHPSYGR--LNNDIALIELDRPVMFTDRIQPVCLPEPTEQPAVGSKCYLTGWGKIQHPGSSHPI-LQQVGLTIQENSQCNRLNSKYVPISQQMVCAANPGTRQMGCHGDSGGPLVCQQPDGSFKLHGAVSWGSPTCTASDAWTVFARVSVFRNWL 1177
            S R++ GENA  G+WPWQ+++    G  FCGGSL++  WVVTA+HC          +VLG +D +  +   Q  +V R I HPS+    +NND+ L++L  P  +T RI PVCL    E    G  C  TGWG++   G+  P  LQQV L +   +QC +       I+  M+CA   G     C GDSGGPLVCQ+ + ++ L G VSWG+  C    A  V+ RVS F  W+
Sbjct:   31 SQRIVNGENAVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHC--NVSPGRHFVVLGEYDRSSNAEPLQVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCRQYWGS--SITDSMICAGGAGASS--CQGDSGGPLVCQKGN-TWVLIGIVSWGTKNCNV-RAPAVYTRVSKFSTWI 257
The following BLAST results are available for this feature:
BLAST of TCONS_00004056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRL1.888e-4640.43Chymotrypsin-like protease CTRL-1 OS=Homo sapiens ... [more]
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