|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004048 ID=TCONS_00004048|Name=TCONS_00004048|organism=Clytia hemisphaerica|type=transcript|length=390bp
agTCAATAAAATAGTATACAAATTTTTAAACACTGGTttacaaaacttta
aaacatgAAATAACAAAGAAGAATGATGATTGTTGGTGAATATGTTCATA
CGAATTTATCATCGCCTTCATCATCTTCACTGCTGCTACAACAAGTGTCA
CTGTATGAAAGAAAATTAGGCACAACATCTCGTGCCCTCCTATCAAAGCT
CACAACATCTTGTGTCCTGCTCTCGAAGCTTGTCAGACCATTGGATATTT
GATCATGCCAACCAAAAGAATGCTACACCCACTGTGACGTGAAATTCTTC
CACCTGGCAATGAACTTCATTTAAAACGACCACCAATACTAGATATACAC
CCCAACACTTCATTCTCGAATGCTTTGGTGTGTTTTAAAG Run BLAST on NCBI transcript from alignment at sc0000039:580135..582401+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004048 ID=TCONS_00004048|Name=TCONS_00004048|organism=Clytia hemisphaerica|type=transcript|length=2267bp|location=Sequence derived from alignment at sc0000039:580135..582401+ (Clytia hemisphaerica)
agTCAATAAAATAGTATACAAATTTTTAAACACTGGTttacaaaacttta
aaacatgAAATAACAAAGAAGAATGATGATTGTTGGTGAATATGTTCATA
CGAATTTATCATCGCCTTCATCATCTTCACTGCTGCTACAACAAGTGTCA
CTGTATGAAAGAAAATTAGGCACAACATCTCGTGCCCTCCTATCAAAGCT
CACAACATCTCGCGCCCTCCTATCAAAGCTTACAACATCTTGTGTCCTGC
TCTCGAAGCTTGTCAGACCATTGGATATTTGATCATGCCAACCAAAAGgt
ttgtgattttttatttcgtttgTTTCTAAGGGTGGAGGAGAGTATTCTCG
GTCCCAAGCCCCTTGTTCATCCTCCTCGTAAAATTCTCCTTCGTATTCTA
TATTATGATATAAATGTTCTtcgattttctgaaaatgcttaTTCTCGTAA
ACAGATTCTTTTCGAACTCTTTTTAATTGTTGCTGAGAAACGCTCCTCAA
TGGCGACAAAAACACGTCATCGTCGTCCAGGTTACCAAGGTGATTATTTT
CCATGATGGGAGAGAAGTAGTGATCATCATATTGCTGATGATAAACATCC
TCATGTTGTCGAATGTTTCCGTTCGAATCGAACATTTCTGAAGAATTTGC
TGAAaacacaaaacttttcaaagaatcgatGACGCTGGTTTTTCTCTGCT
TCTCTGGAGAGTTTGGATACTGGTTACTGTTTGATAGACTCCAATTAAAC
ACTTTTGACATATGAGTGTTATCCCATCGCTCTGGTAAGCTCATCTTCTT
ACGAGACCTGTCTTGAACCACTTTGTGATTTTGTAGATCACCATCATCTT
TCTCCTGATCTTGCAGTTGATCGAATATTTTCCTGTATTGACTGTTCTCC
TCAGCGTTTCCTTGTCTTTTCAATTCGTTGAGAGATATAAGGCGATGTTG
GCGAAAGAGTGTTGGTTGTTGACAGGTCGTTGTTGTATGGCGTCGTGTAT
TTTGTTGAGAGGTCCTCCcttcaacaatattttcatcTTTCGTAACATTT
TGTTGAACTGGTATTGATTGTTGTTTCTTTTGGTGAACTTCTTTTAATCG
CTCTTTATCTCGTTCTGAACGAATATCCAACAAATTATGTAAAGGATTCA
ACGTGTTATTGTTATTGTTGCAAGTTTTTCTCTTACGGTATCTTTCAATA
ACTATTCGTGGCATATACTGATCAACAAATTTGTCGAGAACacttttttc
tgtgttttgtaCTGTATTCCATCTCGACTGTAAAGGTTGTTGTGAGGTGT
GACTTTCAGAGATCCCAGAATCGAAACTTTCTTTATTGATCGAACAAGCT
TCTTTGTATTCTTTTATCCTTGCCAACCGTCTTTTTTCCTCCTCCTTCAA
AAATTTATCCTGTTCACGGAGCATCCGTCGTTGTCGACGTTGCACGCCGC
GGCCAACATAACAAGCTATGCAGACAGGTATTCCAATAATGGCAGCCAAG
ACTACTATAGGAGCGACTGTTTTCAACCATTTCAGCTGGAGATGAGAATC
TTTTGGTTTGCTCTCTTTACAATCACCATAAAGTGTCATATTGACGTATG
TAACATCCATCAAAATTGATAACTCTGTTTTGAATCTTTGAGAAACTACC
GACTCATCAAAAAGTCGATTGCGTAACTTTTCGATCGCGTCACGATTGCA
TTTTTTTCCATTGTCGATATTTAGGAACGAAAACTTCAAACATTTCTTTG
CGAACTCTTTGATTCTGACATTTTCGATTTTCGTTTCCATTAGCCTATCA
GCCAAAATTTTTACTAAAGCATATCGAGTATCCAGTCTATTCATGAAATT
TTTAGCAGACAAAGTTCGTGTACATACTTTGATTTCGTGTAAATCGTTCA
CGAAAGGTGACGTCACGAAAATTTTTAGCTCTCTGTAGCTTCGATAATTA
TTGGATAAGACTCGAATGAAATAGGTGGAAACTCCTTCGTTTCCTTGCAG
AGGAAAACCATAAATTTCATTGCTAGCCCATTTATATTTCAACCAAGTGT
TTGAGAAAATGGGCTGTTTATCTTCCGTCAGAAGTTCGTAGTAAATATTC
CCAGCGTGATCTCTGAGAAATTCTAAGGAGTGGATTTTCTTGTAGAATGC
TACACCCACTGTGACGTGAAATTCTTCCACCTGGCAATGAACTTCATTTA
AAACGACCACCAATACTAGATATACACCCCAACACTTCATTCTCGAATGC
TTTGGTGTGTTTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004048-exon-sc0000039-1491911889:580135..580340 | TCONS_00004048-exon-sc0000039-1491911889:580135..580340 | Clytia hemisphaerica | exon |
| TCONS_00004048-exon-sc0000039-1510915933:580135..580340 | TCONS_00004048-exon-sc0000039-1510915933:580135..580340 | Clytia hemisphaerica | exon |
| TCONS_00004048-exon-sc0000039-1575043694:580135..580340 | TCONS_00004048-exon-sc0000039-1575043694:580135..580340 | Clytia hemisphaerica | exon |
| TCONS_00004048-exon-sc0000039-1491911889:580371..580432 | TCONS_00004048-exon-sc0000039-1491911889:580371..580432 | Clytia hemisphaerica | exon |
| TCONS_00004048-exon-sc0000039-1510915933:580371..580432 | TCONS_00004048-exon-sc0000039-1510915933:580371..580432 | Clytia hemisphaerica | exon |
| TCONS_00004048-exon-sc0000039-1575043694:580371..580432 | TCONS_00004048-exon-sc0000039-1575043694:580371..580432 | Clytia hemisphaerica | exon |
| TCONS_00004048-exon-sc0000039-1491911889:582280..582401 | TCONS_00004048-exon-sc0000039-1491911889:582280..582401 | Clytia hemisphaerica | exon |
| TCONS_00004048-exon-sc0000039-1510915933:582280..582401 | TCONS_00004048-exon-sc0000039-1510915933:582280..582401 | Clytia hemisphaerica | exon |
| TCONS_00004048-exon-sc0000039-1575043694:582280..582401 | TCONS_00004048-exon-sc0000039-1575043694:582280..582401 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:580135..582401 + |
Blast
The following BLAST results are available for this feature:
|
