TCONS_00004039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004039
Unique NameTCONS_00004039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2018

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004039 ID=TCONS_00004039|Name=TCONS_00004039|organism=Clytia hemisphaerica|type=transcript|length=2018bp
GGGATTTATAAAAATTCACTACTCAAGAAAATTATTTACTCAGTTTACTT
CGAGCAGAAGAGACATAATTGGATTGAAATGAACTTCGTACACGTTTTTG
TTCTTTTGGTGGTTTTCGTCAACAAAATCGAATCAAAATGTGACGCACTC
ACTCGATCAGTTAACGGTCAATacaattcaaaattcattttaaatttgGG
AGATGGATTTCGTTCAACAGATTTAACGATCAAGTTCGTTGACGTTGTAC
AGAATGTTGATGCTTCGCATAGTAAAACACCGAACGCAAAGAGTATTATA
GATGGAgggaaaactttcaaaataacaGGTGGCTTCTCACAAAGAAGAAT
TGAAGTTCACGTCAAGGGTTACAACACTAAACTTTCATCAATCGAAGCAA
CAGGGATCGACTGCAACTTTGAAGGAAAACAATGTAAATCAAGTGACTTT
GGTGCAGCAAAATGTGAAAGAATGCTTCGAGAAAGGACTATTGAGCAAGG
AAAGATTCAAAGTGGAATTTGGTTCACAAGCGGAAATGATTTTCGCTTTG
GTGCAAAATTGACGtttgGTTTTGAAACAGCTGTCCCAGACTTTCACGCA
TGGCAAGGGATCAACAGACTCTATGAAAAACCACaatgtcaaaatatttt
ccacTTTCAATCACAACAAGGAATGGTTGCTGGAGTATCTCGACTTTCTG
TCAAATTTCACTACTCGCCACCTGGCAAATTAGTTTACATCGCTTTTGGG
GATGTAGAATGTCTACAAGTGTGTGGAACAAAACCAGACTGTCTTCTTCC
AACAACGCCtacaacaacaaccactacGACCACAACAACTACAGAAGAAC
CCAAAGTAACCACAGAACCCGAAGTAACCACGGAAGAACCCGAAGTAACT
ACGGAAGAACCCGAGCAAGCCACGGAATCAACACCTACGACAACCACTCG
AAGAAGACCTATCATTGCCGTCTTAGAGGATTTCGAAGtgaattaaaaga
aaaactgttttttattaTCGCTTATCTAGAAAACATGGAAGTAAAGGACG
ATTTTTGTCACATATTGTCTTCTACCATTTCTCAAGCAGACTTCAACAAT
TAAAGTTTGTCTTAGAAGTATGTGGAAACTTTACTTTCTTAACAATTTCT
CAGAATGCTTTAATAGTAAGCTATGCATCGTTGCAAAGATATTTTAGAGG
TGAAGAATCTAAAAGATTGTAACTTACTTTAGTACtaagtaaaaaaaagt
aaagcGTCCACAAATACTTTTGATACGCGGATTTGGGtttcatccgcgaa
attaagtctcaaTGGAATGTTTTCAAACAAATATCCTGTCAAATAAACTA
CTTTTtcaatgtttactggcatcaaagaagtgctAATAGCGCGTCTTtaa
acaaccaacatgcatgatgtgatgatttgacagtaaaagcaACGAActcg
tgaaaatattgtctcccaatagtgccacccgcgaaaatCTATCCTATTAA
AGTATGTATGTCAACACATTGCAAACAATTTGGTAATTTTAGATACCCCA
TTCTCACAAACCCTGCACAGACTCGGTAggatttttgttaaaaagaacGG
ACCAAAGCTCGATGGTTATTGATACTCCCATGTTTTATATGGCTGgagaa
ttccattgtttttgagcaAGAAAATTCAGAGGGGAAGGACGAAATAGCAC
AATATTATGCAGTGAGGATTTTCTTATCTGGTTATTTTCAgcagggacaa
aaattggagaaaaactTTCAGATaggaacgatattttggccaatttttcc
agtagcAAGGGGGTCCCAGTGGAGTGGgtatgtgagaagggggtgtttta
agttttttttaaacctGCATTTCAGCAAGAAGTAAGTGAAGATTATTCTC
TTCTACCAAGAAAACATTAGCTTATAATTTTTAATGAGAATTtactatgg
cgcgccaaagcggaaataaatactatctttcatttcgcgacactatcttt
catttcgcgacactatct
Run BLAST on NCBI

transcript from alignment at sc0000039:461146..463642+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004039 ID=TCONS_00004039|Name=TCONS_00004039|organism=Clytia hemisphaerica|type=transcript|length=2497bp|location=Sequence derived from alignment at sc0000039:461146..463642+ (Clytia hemisphaerica)
GGGATTTATAAAAATTCACTACTCAAGAAAATTATTTACTCAGTTTACTT
CGAGCAGAAGAGACATAATTGGATTGAAATGAACTTCGTACACGTTTTTG
TTCTTTTGGTGGTTTTCGTCAACAAAATCGAATCAAAATGTGACGCACTC
ACTCGATCAGTTAACGGTCAATacaattcaaaattcattttaaatttgGG
AGATGGATTTCGTTCAACAGATTTAACGATCAAGTTCGTTGACGTTGTAC
AGAATGTTGATGCTTCGCATAGTAAAACACCGAACGCAAAGAGTATTATA
GATGGAgggaaaactttcaaaataacaGGTGGCTTCTCACAAAGAAGAAT
TGAAGTTCACGTCAAGGGTTACAACACTAAACTTTCATCAATCGAAGCAA
CAGGGATCGACTGCAACTTTGAAGGAAAACAATGTAAATCAAGTGACTTT
GGTGCAGCAAAATGTGAAAGAATGCTTCGAGAAAGGACTATTGAGCAAGG
AAAGATTCAAAGTGGAATTTGGTTCACAAGCGGAAATGATTTTCGCTTTG
GTGCAAAATTGACGGTAAGTTAGTGTAAAAAATCAACTAAAACCTCGCCA
GCATTGATATAACATCAATAGTTTCAAACGAAACCAAAATCcttattttc
acttttaatttttagtttgGTTTTGAAACAGCTGTCCCAGACTTTCACGC
ATGGCAAGGGATCAACAGACTCTATGAAAAACCACaatgtcaaaatattt
tccacTTTCAATCACAACAAGGAATGGTTGCTGGAGTATCTCGACTTTCT
GTCAAATTTCACTACTCGCCACCTGGCAAATTAGTTTACATCGCTTTTGG
GGATGTAGAATGTCTACAAGTGTGTGGAACAAAACCAGACTGTCTTCTTC
CAACAACGCCtacaacaacaaccactacGACCACAACAACTACAGAAGAA
CCCAAAGTAACCACAGAACCCGAAGTAACCACGGAAGAACCCGAAGTAAC
AACGGGAGAACCTGAAGTAACCACAGAACAACCTGAGGCCACCACAGAAC
AACCCGAGGCCACCACAGAACAACCCGAAGTAGCCACAGAACAACCCGAA
GTGATCACGGAACAACCCGAAGTAACAACGGAACAACCCGAAGTAACAAC
GGAACAACCCGAAGTCACCACGGAAGAACCCGAAGTAACCACGGAACAAC
CCGAAGTAACAACGGAACAACCCGAAGTAACAACGGGAGAACCCGAAGTA
ACCACAGAACAACCTGAGGCCACCACAGAACAACCCGAGGCCACCACAGA
ACAACCCGAAGTAGCCACAGAACAACCCGAAGTAACCACGGAAAAACCCG
AAGTCACAACGGAAGAACCCGAGGTAACTACGGAAGAACCCGAGCAAGCC
ACGGAATCAACACCTACGACAACCACTCGAAGAAGACCTATCATTGCCGT
CTTAGAGGATTTCGAAGtgaattaaaagaaaaactgttttttattaTCGC
TTATCTAGAAAACATGGAAGTAAAGGACGATTTTTGTCACATATTGTCTT
CTACCATTTCTCAAGCAGACTTCAACAATTAAAGTTTGTCTTAGAAGTAT
GTGGAAACTTTACTTTCTTAACAATTTCTCAGAATGCTTTAATAGTAAGC
TATGCATCGTTGCAAAGATATTTTAGAGGTGAAGAATCTAAAAGATTGTA
ACTTACTTTAGTACtaagtaaaaaaaagtaaagcGTCCACAAATACTTTT
GATACGCGGATTTGGGtttcatccgcgaaattaagtctcaaTGGAATGTT
TTCAAACAAATATCCTGTCAAATAAACTACTTTTtcaatgtttactggca
tcaaagaagtgctAATAGCGCGTCTTtaaacaaccaacatgcatgatgtg
atgatttgacagtaaaagcaACGAActcgtgaaaatattgtctcccaata
gtgccacccgcgaaaatCTATCCTATTAAAGTATGTATGTCAACACATTG
CAAACAATTTGGTAATTTTAGATACCCCATTCTCACAAACCCTGCACAGA
CTCGGTAggatttttgttaaaaagaacGGACCAAAGCTCGATGGTTATTG
ATACTCCCATGTTTTATATGGCTGgagaattccattgtttttgagcaAGA
AAATTCAGAGGGGAAGGACGAAATAGCACAATATTATGCAGTGAGGATTT
TCTTATCTGGTTATTTTCAgcagggacaaaaattggagaaaaactTTCAG
ATaggaacgatattttggccaatttttccagtagcAAGGGGGTCCCAGTG
GAGTGGgtatgtgagaagggggtgttttaagttttttttaaacctGCATT
TCAGCAAGAAGTAAGTGAAGATTATTCTCTTCTACCAAGAAAACATTAGC
TTATAATTTTTAATGAGAATTtactatggcgcgccaaagcggaaataaat
actatctttcatttcgcgacactatctttcatttcgcgacactatct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002266XLOC_002266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004039-exon-sc0000039-1491911889:461146..461709TCONS_00004039-exon-sc0000039-1491911889:461146..461709Clytia hemisphaericaexon
TCONS_00004039-exon-sc0000039-1510915933:461146..461709TCONS_00004039-exon-sc0000039-1510915933:461146..461709Clytia hemisphaericaexon
TCONS_00004039-exon-sc0000039-1575043694:461146..461709TCONS_00004039-exon-sc0000039-1575043694:461146..461709Clytia hemisphaericaexon
TCONS_00004039-exon-sc0000039-1491911889:461811..462140TCONS_00004039-exon-sc0000039-1491911889:461811..462140Clytia hemisphaericaexon
TCONS_00004039-exon-sc0000039-1510915933:461811..462140TCONS_00004039-exon-sc0000039-1510915933:461811..462140Clytia hemisphaericaexon
TCONS_00004039-exon-sc0000039-1575043694:461811..462140TCONS_00004039-exon-sc0000039-1575043694:461811..462140Clytia hemisphaericaexon
TCONS_00004039-exon-sc0000039-1491911889:462519..463642TCONS_00004039-exon-sc0000039-1491911889:462519..463642Clytia hemisphaericaexon
TCONS_00004039-exon-sc0000039-1510915933:462519..463642TCONS_00004039-exon-sc0000039-1510915933:462519..463642Clytia hemisphaericaexon
TCONS_00004039-exon-sc0000039-1575043694:462519..463642TCONS_00004039-exon-sc0000039-1575043694:462519..463642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:461146..463642 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0165397	0	0	0	0.0174945	0	0.213164	0	0	0	0	0.0099042	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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