TCONS_00004038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004038
Unique NameTCONS_00004038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2144

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004038 ID=TCONS_00004038|Name=TCONS_00004038|organism=Clytia hemisphaerica|type=transcript|length=2144bp
ACAAAATATGAATATCAAAAAGGGATTTATAAAAATTCACTACTCAAGAA
AATTATTTACTCAGTTTACTTCGAGCAGAAGAGACATAATTGGATTGAAA
TGAACTTCGTACACGTTTTTGTTCTTTTGGTGGTTTTCGTCAACAAAATC
GAATCAAAATGTGACGCACTCACTCGATCAGTTAACGGTCAATacaattc
aaaattcattttaaatttgGGAGATGGATTTCGTTCAACAGATTTAACGA
TCAAGTTCGTTGACGTTGTACAGAATGTTGATGCTTCGCATAGTAAAACA
CCGAACGCAAAGAGTATTATAGATGGAgggaaaactttcaaaataacaGG
TGGCTTCTCACAAAGAAGAATTGAAGTTCACGTCAAGGGTTACAACACTA
AACTTTCATCAATCGAAGCAACAGGGATCGACTGCAACTTTGAAGGAAAA
CAATGTAAATCAAGTGACTTTGGTGCAGCAAAATGTGAAAGAATGCTTCG
AGAAAGGACTATTGAGCAAGGAAAGATTCAAAGTGGAATTTGGTTCACAA
GCGGAAATGATTTTCGCTTTGGTGCAAAATTGACGtttgGTTTTGAAACA
GCTGTCCCAGACTTTCACGCATGGCAAGGGATCAACAGACTCTATGAAAA
ACCACaatgtcaaaatattttccacTTTCAATCACAACAAGGAATGGTTG
CTGGAGTATCTCGACTTTCTGTCAAATTTCACTACTCGCCACCTGGCAAA
TTAGTTTACATCGCTTTTGGGGATGTAGAATGTCTACAAGTGTGTGGAAC
AAAACCAGACTGTCTTCTTCCAACAACGCCtacaacaacaaccactacGA
CCACAACAACTACAGAAGAACCCAAAGTAACCACAGAACCCGAAGTAACC
ACGGAAGAACCCGAAGCCACCACAGAACAACCCGAGGCCACCACAGAACA
ACCCGAAGTAGCCACAGAACAACCCGAAGTAACCACGGAAAAACCCGAAG
TCACAACGGAAGAACCCGAGGTAACTACGGAAGAACCCGAGCAAGCCACG
GAATCAACACCTACGACAACCACTCGAAGAAGACCTATCATTGCCGTCTT
AGAGGATTTCGAAGtgaattaaaagaaaaactgttttttattaTCGCTTA
TCTAGAAAACATGGAAGTAAAGGACGATTTTTGTCACATATTGTCTTCTA
CCATTTCTCAAGCAGACTTCAACAATTAAAGTTTGTCTTAGAAGTATGTG
GAAACTTTACTTTCTTAACAATTTCTCAGAATGCTTTAATAGTAAGCTAT
GCATCGTTGCAAAGATATTTTAGAGGTGAAGAATCTAAAAGATTGTAACT
TACTTTAGTACtaagtaaaaaaaagtaaagcGTCCACAAATACTTTTGAT
ACGCGGATTTGGGtttcatccgcgaaattaagtctcaaTGGAATGTTTTC
AAACAAATATCCTGTCAAATAAACTACTTTTtcaatgtttactggcatca
aagaagtgctAATAGCGCGTCTTtaaacaaccaacatgcatgatgtgatg
atttgacagtaaaagcaACGAActcgtgaaaatattgtctcccaatagtg
ccacccgcgaaaatCTATCCTATTAAAGTATGTATGTCAACACATTGCAA
ACAATTTGGTAATTTTAGATACCCCATTCTCACAAACCCTGCACAGACTC
GGTAggatttttgttaaaaagaacGGACCAAAGCTCGATGGTTATTGATA
CTCCCATGTTTTATATGGCTGgagaattccattgtttttgagcaAGAAAA
TTCAGAGGGGAAGGACGAAATAGCACAATATTATGCAGTGAGGATTTTCT
TATCTGGTTATTTTCAgcagggacaaaaattggagaaaaactTTCAGATa
ggaacgatattttggccaatttttccagtagcAAGGGGGTCCCAGTGGAG
TGGgtatgtgagaagggggtgttttaagttttttttaaacctGCATTTCA
GCAAGAAGTAAGTGAAGATTATTCTCTTCTACCAAGAAAACATTAGCTTA
TAATTTTTAATGAGAATTtactatggcgcgccaaagcggaaataaatact
atctttcatttcgcgacactatctttcatttcgcgacactatct
Run BLAST on NCBI

transcript from alignment at sc0000039:461125..463642+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004038 ID=TCONS_00004038|Name=TCONS_00004038|organism=Clytia hemisphaerica|type=transcript|length=2518bp|location=Sequence derived from alignment at sc0000039:461125..463642+ (Clytia hemisphaerica)
ACAAAATATGAATATCAAAAAGGGATTTATAAAAATTCACTACTCAAGAA
AATTATTTACTCAGTTTACTTCGAGCAGAAGAGACATAATTGGATTGAAA
TGAACTTCGTACACGTTTTTGTTCTTTTGGTGGTTTTCGTCAACAAAATC
GAATCAAAATGTGACGCACTCACTCGATCAGTTAACGGTCAATacaattc
aaaattcattttaaatttgGGAGATGGATTTCGTTCAACAGATTTAACGA
TCAAGTTCGTTGACGTTGTACAGAATGTTGATGCTTCGCATAGTAAAACA
CCGAACGCAAAGAGTATTATAGATGGAgggaaaactttcaaaataacaGG
TGGCTTCTCACAAAGAAGAATTGAAGTTCACGTCAAGGGTTACAACACTA
AACTTTCATCAATCGAAGCAACAGGGATCGACTGCAACTTTGAAGGAAAA
CAATGTAAATCAAGTGACTTTGGTGCAGCAAAATGTGAAAGAATGCTTCG
AGAAAGGACTATTGAGCAAGGAAAGATTCAAAGTGGAATTTGGTTCACAA
GCGGAAATGATTTTCGCTTTGGTGCAAAATTGACGGTAAGTTAGTGTAAA
AAATCAACTAAAACCTCGCCAGCATTGATATAACATCAATAGTTTCAAAC
GAAACCAAAATCcttattttcacttttaatttttagtttgGTTTTGAAAC
AGCTGTCCCAGACTTTCACGCATGGCAAGGGATCAACAGACTCTATGAAA
AACCACaatgtcaaaatattttccacTTTCAATCACAACAAGGAATGGTT
GCTGGAGTATCTCGACTTTCTGTCAAATTTCACTACTCGCCACCTGGCAA
ATTAGTTTACATCGCTTTTGGGGATGTAGAATGTCTACAAGTGTGTGGAA
CAAAACCAGACTGTCTTCTTCCAACAACGCCtacaacaacaaccactacG
ACCACAACAACTACAGAAGAACCCAAAGTAACCACAGAACCCGAAGTAAC
CACGGAAGAACCCGAAGTAACAACGGGAGAACCTGAAGTAACCACAGAAC
AACCTGAGGCCACCACAGAACAACCCGAGGCCACCACAGAACAACCCGAA
GTAGCCACAGAACAACCCGAAGTGATCACGGAACAACCCGAAGTAACAAC
GGAACAACCCGAAGTAACAACGGAACAACCCGAAGTCACCACGGAAGAAC
CCGAAGTAACCACGGAACAACCCGAAGTAACAACGGAACAACCCGAAGTA
ACAACGGGAGAACCCGAAGTAACCACAGAACAACCTGAGGCCACCACAGA
ACAACCCGAGGCCACCACAGAACAACCCGAAGTAGCCACAGAACAACCCG
AAGTAACCACGGAAAAACCCGAAGTCACAACGGAAGAACCCGAGGTAACT
ACGGAAGAACCCGAGCAAGCCACGGAATCAACACCTACGACAACCACTCG
AAGAAGACCTATCATTGCCGTCTTAGAGGATTTCGAAGtgaattaaaaga
aaaactgttttttattaTCGCTTATCTAGAAAACATGGAAGTAAAGGACG
ATTTTTGTCACATATTGTCTTCTACCATTTCTCAAGCAGACTTCAACAAT
TAAAGTTTGTCTTAGAAGTATGTGGAAACTTTACTTTCTTAACAATTTCT
CAGAATGCTTTAATAGTAAGCTATGCATCGTTGCAAAGATATTTTAGAGG
TGAAGAATCTAAAAGATTGTAACTTACTTTAGTACtaagtaaaaaaaagt
aaagcGTCCACAAATACTTTTGATACGCGGATTTGGGtttcatccgcgaa
attaagtctcaaTGGAATGTTTTCAAACAAATATCCTGTCAAATAAACTA
CTTTTtcaatgtttactggcatcaaagaagtgctAATAGCGCGTCTTtaa
acaaccaacatgcatgatgtgatgatttgacagtaaaagcaACGAActcg
tgaaaatattgtctcccaatagtgccacccgcgaaaatCTATCCTATTAA
AGTATGTATGTCAACACATTGCAAACAATTTGGTAATTTTAGATACCCCA
TTCTCACAAACCCTGCACAGACTCGGTAggatttttgttaaaaagaacGG
ACCAAAGCTCGATGGTTATTGATACTCCCATGTTTTATATGGCTGgagaa
ttccattgtttttgagcaAGAAAATTCAGAGGGGAAGGACGAAATAGCAC
AATATTATGCAGTGAGGATTTTCTTATCTGGTTATTTTCAgcagggacaa
aaattggagaaaaactTTCAGATaggaacgatattttggccaatttttcc
agtagcAAGGGGGTCCCAGTGGAGTGGgtatgtgagaagggggtgtttta
agttttttttaaacctGCATTTCAGCAAGAAGTAAGTGAAGATTATTCTC
TTCTACCAAGAAAACATTAGCTTATAATTTTTAATGAGAATTtactatgg
cgcgccaaagcggaaataaatactatctttcatttcgcgacactatcttt
catttcgcgacactatct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002266XLOC_002266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004038-exon-sc0000039-1491911889:461125..461709TCONS_00004038-exon-sc0000039-1491911889:461125..461709Clytia hemisphaericaexon
TCONS_00004038-exon-sc0000039-1510915933:461125..461709TCONS_00004038-exon-sc0000039-1510915933:461125..461709Clytia hemisphaericaexon
TCONS_00004038-exon-sc0000039-1575043694:461125..461709TCONS_00004038-exon-sc0000039-1575043694:461125..461709Clytia hemisphaericaexon
TCONS_00004038-exon-sc0000039-1491911889:461811..462140TCONS_00004038-exon-sc0000039-1491911889:461811..462140Clytia hemisphaericaexon
TCONS_00004038-exon-sc0000039-1510915933:461811..462140TCONS_00004038-exon-sc0000039-1510915933:461811..462140Clytia hemisphaericaexon
TCONS_00004038-exon-sc0000039-1575043694:461811..462140TCONS_00004038-exon-sc0000039-1575043694:461811..462140Clytia hemisphaericaexon
TCONS_00004038-exon-sc0000039-1491911889:462414..463642TCONS_00004038-exon-sc0000039-1491911889:462414..463642Clytia hemisphaericaexon
TCONS_00004038-exon-sc0000039-1510915933:462414..463642TCONS_00004038-exon-sc0000039-1510915933:462414..463642Clytia hemisphaericaexon
TCONS_00004038-exon-sc0000039-1575043694:462414..463642TCONS_00004038-exon-sc0000039-1575043694:462414..463642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:461125..463642 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.776035	1.05143	5.39025e-06	1.03679e-05	1.65354	1.60505	0.325734	2.24925	0	0	0.130305	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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