TCONS_00004036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004036
Unique NameTCONS_00004036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2087

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004036 ID=TCONS_00004036|Name=TCONS_00004036|organism=Clytia hemisphaerica|type=transcript|length=2087bp
TGACGGACAAAATATGAATATCAAAAAGGGATTTATAAAAATTCACTACT
CAAGAAAATTATTTACTCAGTTTACTTCGAGCAGAAGAGACATAATTGGA
TTGAAATGAACTTCGTACACGTTTTTGTTCTTTTGGTGGTTTTCGTCAAC
AAAATCGAATCAAAATGTGACGCACTCACTCGATCAGTTAACGGTCAATa
caattcaaaattcattttaaatttgGGAGATGGATTTCGTTCAACAGATT
TAACGATCAAGTTCGTTGACGTTGTACAGAATGTTGATGCTTCGCATAGT
AAAACACCGAACGCAAAGAGTATTATAGATGGAgggaaaactttcaaaat
aacaGGTGGCTTCTCACAAAGAAGAATTGAAGTTCACGTCAAGGGTTACA
ACACTAAACTTTCATCAATCGAAGCAACAGGGATCGACTGCAACTTTGAA
GGAAAACAATGTAAATCAAGTGACTTTGGTGCAGCAAAATGTGAAAGAAT
GCTTCGAGAAAGGACTATTGAGCAAGGAAAGATTCAAAGTGGAATTTGGT
TCACAAGCGGAAATGATTTTCGCTTTGGTGCAAAATTGACGtttgGTTTT
GAAACAGCTGTCCCAGACTTTCACGCATGGCAAGGGATCAACAGACTCTA
TGAAAAACCACaatgtcaaaatattttccacTTTCAATCACAACAAGGAA
TGGTTGCTGGAGTATCTCGACTTTCTGTCAAATTTCACTACTCGCCACCT
GGCAAATTAGTTTACATCGCTTTTGGGGATGTAGAATGTCTACAAGTGTG
TGGAACAAAACCAGACTGTCTTCTTCCAACAACGCCtacaacaacaacca
ctacGACCACAACAACTACAGAAGAACCCAAAGTAACCACAGAACCCGAA
GTAACCACGGAAGAACCCGAAGCCACCACAGAACAACCCGAGGCCACCAC
AGAACAACCCGAAGTAACTACGGAAGAACCCGAGCAAGCCACGGAATCAA
CACCTACGACAACCACTCGAAGAAGACCTATCATTGCCGTCTTAGAGGAT
TTCGAAGtgaattaaaagaaaaactgttttttattaTCGCTTATCTAGAA
AACATGGAAGTAAAGGACGATTTTTGTCACATATTGTCTTCTACCATTTC
TCAAGCAGACTTCAACAATTAAAGTTTGTCTTAGAAGTATGTGGAAACTT
TACTTTCTTAACAATTTCTCAGAATGCTTTAATAGTAAGCTATGCATCGT
TGCAAAGATATTTTAGAGGTGAAGAATCTAAAAGATTGTAACTTACTTTA
GTACtaagtaaaaaaaagtaaagcGTCCACAAATACTTTTGATACGCGGA
TTTGGGtttcatccgcgaaattaagtctcaaTGGAATGTTTTCAAACAAA
TATCCTGTCAAATAAACTACTTTTtcaatgtttactggcatcaaagaagt
gctAATAGCGCGTCTTtaaacaaccaacatgcatgatgtgatgatttgac
agtaaaagcaACGAActcgtgaaaatattgtctcccaatagtgccacccg
cgaaaatCTATCCTATTAAAGTATGTATGTCAACACATTGCAAACAATTT
GGTAATTTTAGATACCCCATTCTCACAAACCCTGCACAGACTCGGTAgga
tttttgttaaaaagaacGGACCAAAGCTCGATGGTTATTGATACTCCCAT
GTTTTATATGGCTGgagaattccattgtttttgagcaAGAAAATTCAGAG
GGGAAGGACGAAATAGCACAATATTATGCAGTGAGGATTTTCTTATCTGG
TTATTTTCAgcagggacaaaaattggagaaaaactTTCAGATaggaacga
tattttggccaatttttccagtagcAAGGGGGTCCCAGTGGAGTGGgtat
gtgagaagggggtgttttaagttttttttaaacctGCATTTCAGCAAGAA
GTAAGTGAAGATTATTCTCTTCTACCAAGAAAACATTAGCTTATAATTTT
TAATGAGAATTtactatggcgcgccaaagcggaaataaatactatctttc
atttcgcgacactatctttcatttcgcgacactatct
Run BLAST on NCBI

transcript from alignment at sc0000039:461119..463642+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004036 ID=TCONS_00004036|Name=TCONS_00004036|organism=Clytia hemisphaerica|type=transcript|length=2524bp|location=Sequence derived from alignment at sc0000039:461119..463642+ (Clytia hemisphaerica)
TGACGGACAAAATATGAATATCAAAAAGGGATTTATAAAAATTCACTACT
CAAGAAAATTATTTACTCAGTTTACTTCGAGCAGAAGAGACATAATTGGA
TTGAAATGAACTTCGTACACGTTTTTGTTCTTTTGGTGGTTTTCGTCAAC
AAAATCGAATCAAAATGTGACGCACTCACTCGATCAGTTAACGGTCAATa
caattcaaaattcattttaaatttgGGAGATGGATTTCGTTCAACAGATT
TAACGATCAAGTTCGTTGACGTTGTACAGAATGTTGATGCTTCGCATAGT
AAAACACCGAACGCAAAGAGTATTATAGATGGAgggaaaactttcaaaat
aacaGGTGGCTTCTCACAAAGAAGAATTGAAGTTCACGTCAAGGGTTACA
ACACTAAACTTTCATCAATCGAAGCAACAGGGATCGACTGCAACTTTGAA
GGAAAACAATGTAAATCAAGTGACTTTGGTGCAGCAAAATGTGAAAGAAT
GCTTCGAGAAAGGACTATTGAGCAAGGAAAGATTCAAAGTGGAATTTGGT
TCACAAGCGGAAATGATTTTCGCTTTGGTGCAAAATTGACGGTAAGTTAG
TGTAAAAAATCAACTAAAACCTCGCCAGCATTGATATAACATCAATAGTT
TCAAACGAAACCAAAATCcttattttcacttttaatttttagtttgGTTT
TGAAACAGCTGTCCCAGACTTTCACGCATGGCAAGGGATCAACAGACTCT
ATGAAAAACCACaatgtcaaaatattttccacTTTCAATCACAACAAGGA
ATGGTTGCTGGAGTATCTCGACTTTCTGTCAAATTTCACTACTCGCCACC
TGGCAAATTAGTTTACATCGCTTTTGGGGATGTAGAATGTCTACAAGTGT
GTGGAACAAAACCAGACTGTCTTCTTCCAACAACGCCtacaacaacaacc
actacGACCACAACAACTACAGAAGAACCCAAAGTAACCACAGAACCCGA
AGTAACCACGGAAGAACCCGAAGTAACAACGGGAGAACCTGAAGTAACCA
CAGAACAACCTGAGGCCACCACAGAACAACCCGAGGCCACCACAGAACAA
CCCGAAGTAGCCACAGAACAACCCGAAGTGATCACGGAACAACCCGAAGT
AACAACGGAACAACCCGAAGTAACAACGGAACAACCCGAAGTCACCACGG
AAGAACCCGAAGTAACCACGGAACAACCCGAAGTAACAACGGAACAACCC
GAAGTAACAACGGGAGAACCCGAAGTAACCACAGAACAACCTGAGGCCAC
CACAGAACAACCCGAGGCCACCACAGAACAACCCGAAGTAGCCACAGAAC
AACCCGAAGTAACCACGGAAAAACCCGAAGTCACAACGGAAGAACCCGAG
GTAACTACGGAAGAACCCGAGCAAGCCACGGAATCAACACCTACGACAAC
CACTCGAAGAAGACCTATCATTGCCGTCTTAGAGGATTTCGAAGtgaatt
aaaagaaaaactgttttttattaTCGCTTATCTAGAAAACATGGAAGTAA
AGGACGATTTTTGTCACATATTGTCTTCTACCATTTCTCAAGCAGACTTC
AACAATTAAAGTTTGTCTTAGAAGTATGTGGAAACTTTACTTTCTTAACA
ATTTCTCAGAATGCTTTAATAGTAAGCTATGCATCGTTGCAAAGATATTT
TAGAGGTGAAGAATCTAAAAGATTGTAACTTACTTTAGTACtaagtaaaa
aaaagtaaagcGTCCACAAATACTTTTGATACGCGGATTTGGGtttcatc
cgcgaaattaagtctcaaTGGAATGTTTTCAAACAAATATCCTGTCAAAT
AAACTACTTTTtcaatgtttactggcatcaaagaagtgctAATAGCGCGT
CTTtaaacaaccaacatgcatgatgtgatgatttgacagtaaaagcaACG
AActcgtgaaaatattgtctcccaatagtgccacccgcgaaaatCTATCC
TATTAAAGTATGTATGTCAACACATTGCAAACAATTTGGTAATTTTAGAT
ACCCCATTCTCACAAACCCTGCACAGACTCGGTAggatttttgttaaaaa
gaacGGACCAAAGCTCGATGGTTATTGATACTCCCATGTTTTATATGGCT
GgagaattccattgtttttgagcaAGAAAATTCAGAGGGGAAGGACGAAA
TAGCACAATATTATGCAGTGAGGATTTTCTTATCTGGTTATTTTCAgcag
ggacaaaaattggagaaaaactTTCAGATaggaacgatattttggccaat
ttttccagtagcAAGGGGGTCCCAGTGGAGTGGgtatgtgagaagggggt
gttttaagttttttttaaacctGCATTTCAGCAAGAAGTAAGTGAAGATT
ATTCTCTTCTACCAAGAAAACATTAGCTTATAATTTTTAATGAGAATTta
ctatggcgcgccaaagcggaaataaatactatctttcatttcgcgacact
atctttcatttcgcgacactatct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002266XLOC_002266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004036-exon-sc0000039-1491911889:461119..461709TCONS_00004036-exon-sc0000039-1491911889:461119..461709Clytia hemisphaericaexon
TCONS_00004036-exon-sc0000039-1510915933:461119..461709TCONS_00004036-exon-sc0000039-1510915933:461119..461709Clytia hemisphaericaexon
TCONS_00004036-exon-sc0000039-1575043694:461119..461709TCONS_00004036-exon-sc0000039-1575043694:461119..461709Clytia hemisphaericaexon
TCONS_00004036-exon-sc0000039-1491911889:461811..462140TCONS_00004036-exon-sc0000039-1491911889:461811..462140Clytia hemisphaericaexon
TCONS_00004036-exon-sc0000039-1510915933:461811..462140TCONS_00004036-exon-sc0000039-1510915933:461811..462140Clytia hemisphaericaexon
TCONS_00004036-exon-sc0000039-1575043694:461811..462140TCONS_00004036-exon-sc0000039-1575043694:461811..462140Clytia hemisphaericaexon
TCONS_00004036-exon-sc0000039-1491911889:462183..462224TCONS_00004036-exon-sc0000039-1491911889:462183..462224Clytia hemisphaericaexon
TCONS_00004036-exon-sc0000039-1510915933:462183..462224TCONS_00004036-exon-sc0000039-1510915933:462183..462224Clytia hemisphaericaexon
TCONS_00004036-exon-sc0000039-1575043694:462183..462224TCONS_00004036-exon-sc0000039-1575043694:462183..462224Clytia hemisphaericaexon
TCONS_00004036-exon-sc0000039-1491911889:462519..463642TCONS_00004036-exon-sc0000039-1491911889:462519..463642Clytia hemisphaericaexon
TCONS_00004036-exon-sc0000039-1510915933:462519..463642TCONS_00004036-exon-sc0000039-1510915933:462519..463642Clytia hemisphaericaexon
TCONS_00004036-exon-sc0000039-1575043694:462519..463642TCONS_00004036-exon-sc0000039-1575043694:462519..463642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:461119..463642 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.136225	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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