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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004028 ID=TCONS_00004028|Name=TCONS_00004028|organism=Clytia hemisphaerica|type=transcript|length=1490bp
GCAATTTACGACTTGATAATATAAAGTGTTGTAGTATTTCGCACTCAATT
ATCATTCAACAGCTTAAAGAGTGGAAATAAGAGCAGAATTGAAAACGTTA
CGAAGATGAGGTTACTTTTGGCTTTGTCAGtcctttgcttgcttgttttg
aTACAAGGAGGTGATTGTAAGAAAAAGGAAGGCGAGAAAAATAACGAAGT
CGAAAGCAAGAAAGATGCAGCCCACTTTCATCACTACAAAAAGaaacatA
TCCCGCGAAAAGCCATGTTCGTTTGCAGACGATTTGCCAACTGTCCAGGA
CCTCGACTGCCACTCAGAATACGAAATTCTGATCGATTCTCATGCTGTTT
GAAATGTGTACAGAAGAGAAATAAGAAGAACAGATTGGTTTTCAGTGCCA
GAGCTGAAAGCTTCGACTGTCTTTGCAAATGTCCTGCCTGTGCACAACTT
AGAGGTTGACTCTACCAAACCTGTAACCTAATAATGATTTTGaatcaaga
aaaaataaaagattattatcaaaacttaaaataatTTGTCGATACCTTTA
TTGAACTATATTTCTGAATAACAAAGcaatgattgaaaaaaatgagaaaa
accgCAAAGAGTTCAGTTTTCAGCAAAATATATTTCTATATTCAAGGAGT
AATAATGGTCtgttgtttatcttttttctgttctTCGATATTCAATCTGG
TCATCACTTTAGACAAAAGGGTGTTCAATCGGCCAACCATTTCACGAGGA
TCGTCCAACAAACCAGCAGTAATAAGTGCGTTGTCAAAAAGCTAAAACGA
TAAAAGAAAATAGAGGTGgtttaaaattgttaaaattgatTATAATGGCA
ACACAAAGCAAAGAATCAGTccaagttttttattttgaagatttttgtcg
CAGTTTGTGAAGCAAGCGATACTAGATTGATGTAACGCTTTCTACGCAAA
TTCCCGGGTTTTGCAACTAGatgaaaaaatgaagcaattattttttcctt
actttaaatttgccactactggcaaaaaccggggtgttTCCGTAAGAAAT
TTAACGTCCTGAACTCATCTAAATATgtaatttccaaaaagaaactCTTG
CCAAGCAGTGACTCAAGAAGGCTAAGAAAGGTAACTTGAACAGCCGTACA
CCCCGTACTGCTTTCTGCAGGTACCTTCCGTTGACATAAAACTTTTTTCT
GAATTAAAACCACACCTTTTTTGATATGAAAACCTGCATTCAATTATACT
TAATATGGTGATTACAAGTTCAGCTTGTGAGCCTACGCAAAAGGTCGTAC
CATTAAATCGAAATGATgcacggttttttataagaaaagtgtTTCTTTTT
GGCTGAGGATGAAGTATTCTTAGGAGTTTTCCGAATCCGAGGATGAGATT
TTCTTtacattattcttattttttataaaaaaatatttttcattttctaa
gacgatatcaaaatttcttatttacgTTTTACgtataaaa Run BLAST on NCBI protein sequence of TCONS_00004028-protein >TCONS_00004028-protein ID=TCONS_00004028-protein|Name=TCONS_00004028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MRLLLALSVLCLLVLIQGGDCKKKEGEKNNEVESKKDAAHFHHYKKKHIP
RKAMFVCRRFANCPGPRLPLRIRNSDRFSCCLKCVQKRNKKNRLVFSARA
ESFDCLCKCPACAQLRG Run BLAST on NCBI transcript from alignment at sc0000039:389411..391225+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004028 ID=TCONS_00004028|Name=TCONS_00004028|organism=Clytia hemisphaerica|type=transcript|length=1815bp|location=Sequence derived from alignment at sc0000039:389411..391225+ (Clytia hemisphaerica)
GCAATTTACGACTTGATAATATAAAGTGTTGTAGTATTTCGCACTCAATT
ATCATTCAACAGCTTAAAGAGTGGAAATAAGAGCAGAATTGAAAACGTTA
CGAAGATGAGGTTACTTTTGGCTTTGTCAGtcctttgcttgcttgttttg
aTACAAGGAGGTGATTGTAAGAAAAAGGAAGGCGAGAAAAATAACGAAGT
CGAAAGCAAGAAAGATGCAGCCCACTTTCATCACTACAAAAAGGTAATAT
TAATAACTGTGGCCAATAGTGATCAATCAATTAATATTGTTCGACCGACA
GCAATTAATTATGCCTCGCCCCATGAGCGACCAGATCTTTTTTACTGTAT
GACTATAAGACCAAGTAAGTTCAAATAACGCAAAATGAAGTGATAGAAAT
AGGGTATGATGTCTGATATACCtcaattttgcctgaaaaaaagaacagtt
tACGCGAAGAATTTGAGTCTCAAAGTGCCTCAACAAAAATAAGGTTCCAA
GGAGGTACAACCCTGTGCTTCCATACTCAGACGATAAAACTCTaacttct
ttttccttttttttatagaaacatATCCCGCGAAAAGCCATGTTCGTTTG
CAGACGATTTGCCAACTGTCCAGGACCTCGACTGCCACTCAGAATACGAA
ATTCTGATCGATTCTCATGCTGTTTGAAATGTGTACAGAAGAGAAATAAG
AAGAACAGATTGGTTTTCAGTGCCAGAGCTGAAAGCTTCGACTGTCTTTG
CAAATGTCCTGCCTGTGCACAACTTAGAGGTTGACTCTACCAAACCTGTA
ACCTAATAATGATTTTGaatcaagaaaaaataaaagattattatcaaaac
ttaaaataatTTGTCGATACCTTTATTGAACTATATTTCTGAATAACAAA
GcaatgattgaaaaaaatgagaaaaaccgCAAAGAGTTCAGTTTTCAGCA
AAATATATTTCTATATTCAAGGAGTAATAATGGTCtgttgtttatctttt
ttctgttctTCGATATTCAATCTGGTCATCACTTTAGACAAAAGGGTGTT
CAATCGGCCAACCATTTCACGAGGATCGTCCAACAAACCAGCAGTAATAA
GTGCGTTGTCAAAAAGCTAAAACGATAAAAGAAAATAGAGGTGgtttaaa
attgttaaaattgatTATAATGGCAACACAAAGCAAAGAATCAGTccaag
ttttttattttgaagatttttgtcgCAGTTTGTGAAGCAAGCGATACTAG
ATTGATGTAACGCTTTCTACGCAAATTCCCGGGTTTTGCAACTAGatgaa
aaaatgaagcaattattttttccttactttaaatttgccactactggcaa
aaaccggggtgttTCCGTAAGAAATTTAACGTCCTGAACTCATCTAAATA
TgtaatttccaaaaagaaactCTTGCCAAGCAGTGACTCAAGAAGGCTAA
GAAAGGTAACTTGAACAGCCGTACACCCCGTACTGCTTTCTGCAGGTACC
TTCCGTTGACATAAAACTTTTTTCTGAATTAAAACCACACCTTTTTTGAT
ATGAAAACCTGCATTCAATTATACTTAATATGGTGATTACAAGTTCAGCT
TGTGAGCCTACGCAAAAGGTCGTACCATTAAATCGAAATGATgcacggtt
ttttataagaaaagtgtTTCTTTTTGGCTGAGGATGAAGTATTCTTAGGA
GTTTTCCGAATCCGAGGATGAGATTTTCTTtacattattcttatttttta
taaaaaaatatttttcattttctaagacgatatcaaaatttcttatttac
gTTTTACgtataaaa Coding sequence (CDS) from alignment at sc0000039:389411..391225+ >TCONS_00004028 ID=TCONS_00004028|Name=TCONS_00004028|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0000039:389411..391225+ (Clytia hemisphaerica)
ATGAGGTTACTTTTGGCTTTGTCAGtcctttgcttgcttgttttgaTACA
AGGAGGTGATTGTAAGAAAAAGGAAGGCGAGAAAAATAACGAAGTCGAAA
GCAAGAAAGATGCAGCCCACTTTCATCACTACAAAAAGaaacatATCCCG
CGAAAAGCCATGTTCGTTTGCAGACGATTTGCCAACTGTCCAGGACCTCG
ACTGCCACTCAGAATACGAAATTCTGATCGATTCTCATGCTGTTTGAAAT
GTGTACAGAAGAGAAATAAGAAGAACAGATTGGTTTTCAGTGCCAGAGCT
GAAAGCTTCGACTGTCTTTGCAAATGTCCTGCCTGTGCACAACTTAGAGG
TTGAATGAGGTTACTTTTGGCTTTGTCAGtcctttgcttgcttgttttga
TACAAGGAGGTGATTGTAAGAAAAAGGAAGGCGAGAAAAATAACGAAGTC
GAAAGCAAGAAAGATGCAGCCCACTTTCATCACTACAAAAAGaaacatAT
CCCGCGAAAAGCCATGTTCGTTTGCAGACGATTTGCCAACTGTCCAGGAC
CTCGACTGCCACTCAGAATACGAAATTCTGATCGATTCTCATGCTGTTTG
AAATGTGTACAGAAGAGAAATAAGAAGAACAGATTGGTTTTCAGTGCCAG
AGCTGAAAGCTTCGACTGTCTTTGCAAATGTCCTGCCTGTGCACAACTTA
GAGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004028-exon-sc0000039-1491911889:389411..389653 | TCONS_00004028-exon-sc0000039-1491911889:389411..389653 | Clytia hemisphaerica | exon |
| TCONS_00004028-exon-sc0000039-1510915933:389411..389653 | TCONS_00004028-exon-sc0000039-1510915933:389411..389653 | Clytia hemisphaerica | exon |
| TCONS_00004028-exon-sc0000039-1575043694:389411..389653 | TCONS_00004028-exon-sc0000039-1575043694:389411..389653 | Clytia hemisphaerica | exon |
| TCONS_00004028-exon-sc0000039-1491911889:389979..391225 | TCONS_00004028-exon-sc0000039-1491911889:389979..391225 | Clytia hemisphaerica | exon |
| TCONS_00004028-exon-sc0000039-1510915933:389979..391225 | TCONS_00004028-exon-sc0000039-1510915933:389979..391225 | Clytia hemisphaerica | exon |
| TCONS_00004028-exon-sc0000039-1575043694:389979..391225 | TCONS_00004028-exon-sc0000039-1575043694:389979..391225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000039 | supercontig | sc0000039:389411..391225 + |
Blast
The following BLAST results are available for this feature:
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