TCONS_00004024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004024
Unique NameTCONS_00004024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004024 ID=TCONS_00004024|Name=TCONS_00004024|organism=Clytia hemisphaerica|type=transcript|length=1340bp
cgatttttaaaggttggAAGAATGACAACAGTTGAGATATTTCCTAAACA
AACCAAAGGAGATTATTGGAATGAAACAAACAAATGGAAATGGACCATCA
ATCTTTGTGTTGGCTCAGTTCTATTATTTTCTACTAGAAACTCAATGGCT
GTATGTGTACCTGCTATTAGTAAAGAACTTGCATGGAATAAAGAAATTTC
TGGAATGGCTCTTTCGTCTTTCTTTTTTGGATATGTTGGTTCTAATATTG
TCGGTGGTTATTTTGCAGATCGATTTGGTGGAGCAAAGACAATTTTGTAC
TCTTCTCTTATATGGTCTTCACTGACTTTCATTTTGCCTCATTTTGCAAA
TTCGCAGGGTATTTTCATATCTggtaattttgacatttttgcgATAAGAT
TTTTAACAGGATGTTCTCAAGGTTTTTTCTACCCTTCCTTTGTAGCCTTG
ATTTCAAGGTACGTGAGAACTGATGATAAAGGATTTGTTGTTGGCATTGT
TTATTCTGGATGTGCTATTGGTATTATTCTGACCGGTTTTTTTGGATCAC
TTTTAATAGAAGCTGGCCATTGGTCCTATGTTTTTATGATAAGTGGATTT
TCTTCATTGCTATGGCTTATTTGGTTTCGAAACCTTTCTCGCGAGACGAT
TCAACAAGAAACAGTAGAAAATTTCAACTCTGGAAGTAAATCCACGGATA
CCACGAAATTCATAAAAAGTTTACTCTGCCAGCCATCAATTTGGGCACTT
TTAATTGCCTACTTTGGATCTGGCTGCACTTATGCTGTATTGAATTCTTG
GACCCCTGTATATTTTCATGATGTGTTTCCAAACAGTAAAGGATGGGTAT
TCAATGTCATACCATGGTTGACCAGTTTTATCTTTGAGCTTGTAACTGGT
TATTATGCAAATGGTTTATTGAAAAGTGGAAAATCTGTATTATTTGTTCG
AAAAACTTATGCTGCTATTCTTTTCATTGGAACAGCACTGTTTTCTGTGC
TTTTAaccaaagtaaaaattttcgaaCAAGCTTTACTATTGATGAGCTTA
GTAGCTGGATTTTCTGCATTTGGCTCAAGCTCGATATCCATGAATCCTCA
AGATGTTTGTCCAAACAAAGCTGGTTCTTTGTTCGGGCTATCAAACGCTA
TAGCCTCTTTTGGAGGTACTATTGGTGTTTATCTCACTGGACTGGTATTG
GAAACCAATAATAACTGGTCATTGATTTTTATTTGTAATGCAATAATatc
aattttatcatttttagtttttcaattATTCGGCTCCACTAAGCCAATTG
ATAACTTATAGTACCTTTtggatttttaatttcataTAAA
Run BLAST on NCBI

transcript from alignment at sc0000039:318513..319852+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004024 ID=TCONS_00004024|Name=TCONS_00004024|organism=Clytia hemisphaerica|type=transcript|length=1340bp|location=Sequence derived from alignment at sc0000039:318513..319852+ (Clytia hemisphaerica)
cgatttttaaaggttggAAGAATGACAACAGTTGAGATATTTCCTAAACA
AACCAAAGGAGATTATTGGAATGAAACAAACAAATGGAAATGGACCATCA
ATCTTTGTGTTGGCTCAGTTCTATTATTTTCTACTAGAAACTCAATGGCT
GTATGTGTACCTGCTATTAGTAAAGAACTTGCATGGAATAAAGAAATTTC
TGGAATGGCTCTTTCGTCTTTCTTTTTTGGATATGTTGGTTCTAATATTG
TCGGTGGTTATTTTGCAGATCGATTTGGTGGAGCAAAGACAATTTTGTAC
TCTTCTCTTATATGGTCTTCACTGACTTTCATTTTGCCTCATTTTGCAAA
TTCGCAGGGTATTTTCATATCTggtaattttgacatttttgcgATAAGAT
TTTTAACAGGATGTTCTCAAGGTTTTTTCTACCCTTCCTTTGTAGCCTTG
ATTTCAAGGTACGTGAGAACTGATGATAAAGGATTTGTTGTTGGCATTGT
TTATTCTGGATGTGCTATTGGTATTATTCTGACCGGTTTTTTTGGATCAC
TTTTAATAGAAGCTGGCCATTGGTCCTATGTTTTTATGATAAGTGGATTT
TCTTCATTGCTATGGCTTATTTGGTTTCGAAACCTTTCTCGCGAGACGAT
TCAACAAGAAACAGTAGAAAATTTCAACTCTGGAAGTAAATCCACGGATA
CCACGAAATTCATAAAAAGTTTACTCTGCCAGCCATCAATTTGGGCACTT
TTAATTGCCTACTTTGGATCTGGCTGCACTTATGCTGTATTGAATTCTTG
GACCCCTGTATATTTTCATGATGTGTTTCCAAACAGTAAAGGATGGGTAT
TCAATGTCATACCATGGTTGACCAGTTTTATCTTTGAGCTTGTAACTGGT
TATTATGCAAATGGTTTATTGAAAAGTGGAAAATCTGTATTATTTGTTCG
AAAAACTTATGCTGCTATTCTTTTCATTGGAACAGCACTGTTTTCTGTGC
TTTTAaccaaagtaaaaattttcgaaCAAGCTTTACTATTGATGAGCTTA
GTAGCTGGATTTTCTGCATTTGGCTCAAGCTCGATATCCATGAATCCTCA
AGATGTTTGTCCAAACAAAGCTGGTTCTTTGTTCGGGCTATCAAACGCTA
TAGCCTCTTTTGGAGGTACTATTGGTGTTTATCTCACTGGACTGGTATTG
GAAACCAATAATAACTGGTCATTGATTTTTATTTGTAATGCAATAATatc
aattttatcatttttagtttttcaattATTCGGCTCCACTAAGCCAATTG
ATAACTTATAGTACCTTTtggatttttaatttcataTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002260XLOC_002260Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004024-exon-sc0000039-1491911889:318513..319852TCONS_00004024-exon-sc0000039-1491911889:318513..319852Clytia hemisphaericaexon
TCONS_00004024-exon-sc0000039-1510915933:318513..319852TCONS_00004024-exon-sc0000039-1510915933:318513..319852Clytia hemisphaericaexon
TCONS_00004024-exon-sc0000039-1575043694:318513..319852TCONS_00004024-exon-sc0000039-1575043694:318513..319852Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:318513..319852 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.82551	6.57593	3.49494	4.79704	6.35591	3.5461	5.98551	7.96836	4.09286	5.14457	2.73441	2.97601	3.66996	3.48183	3.36963	4.47817	4.54226	4.81014	1.64246	2.3993	4.47939	3.76813	8.6065	9.51068	4.01491	4.81903	4.2149	3.58527	5.93778	6.48424
Blast
[Close]
BLAST of TCONS_00004024 vs. Swiss-Prot (Human)
Match: S17A9 (Solute carrier family 17 member 9 OS=Homo sapiens GN=SLC17A9 PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 1.019e-72
Identity = 143/431 (33.18%), Postives = 240/431 (55.68%), Query Frame = 1 
Query:   43 PKQTKGD-----YWNETNKWKWTINLCVGSVLLFSTRNSMAVCVPAISKELAWNKEISGMALSSFFFGYVGSNIVGGYFADRFGGAKTILYSSLIWSSLTFILPHFANSQGIFISGNFDIFAIRFLTGCSQGFFYPSFVALISRYVRTDDKGFVVGIVYSGCAIGIILTGFFGSLLIEAGHWSYVFMISGFSSLLWLIWF--RNLSRETIQQETVENFNSGSKSTDTTKFIK----SLLCQPSIWALLIAYFGSGCTYAVLNSWTPVYFHDVFPNSKGWVFNVIPWLTSFIFELVTGYYANGLLKSGKSVLFVRKTYAAILFIGTALFSVLLTKVKIFEQALLLMSLVXXXXXXXXXXISMNPQDVCPNKAGSLFGLSNAIASFGGTIGVYLTGLVLETNNNWSLIFICNAIISILSFLVFQLFGSTKPID 1302
            P + + D      W+      WT  L +G+ LL+  R+SM +C  ++S++  WNK+ +G+ LSSFF+GY  + +VGG+  DR GG K IL S+  W S+T + P  A+     ++  F  F+ R L G  QG ++P+  +L+S+ VR  ++ F   IV +G   G +LTG  GSLL+E   W  +F  SG  +LLW +W+  R L  E   ++ +      ++S   ++  +     L  +P++WA +++   + C++ +L SW P +F + FP++KGW+FNV+PWL +    L +G+ ++ L+  G   + VRK    +    +++F++ L     F ++++  S   G   F  S IS+N QD+ P+ AG LFG++N   +  G +GV L G ++ET  +W+ +F   AIIS L    F +FG  + +D
Sbjct:    5 PDEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWNKKEAGIVLSSFFWGYCLTQVVGGHLGDRIGGEKVILLSASAWGSITAVTPLLAHLSSAHLA--FMTFS-RILMGLLQGVYFPALTSLLSQKVRESERAFTYSIVGAGSQFGTLLTGAVGSLLLEWYGWQSIFYFSGGLTLLW-VWYVYRYLLSE---KDLILALGVLAQSRPVSRHNRVPWRRLFRKPAVWAAVVSQLSAACSFFILLSWLPTFFEETFPDAKGWIFNVVPWLVAIPASLFSGFLSDHLINQGYRAITVRKLMQGMGLGLSSVFALCLGHTSSFCESVVFASASIGLQTFNHSGISVNIQDLAPSCAGFLFGVANTAGALAGVVGVCLGGYLMETTGSWTCLFNLVAIISNLGLCTFLVFGQAQRVD 428
The following BLAST results are available for this feature:
BLAST of TCONS_00004024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S17A91.019e-7233.18Solute carrier family 17 member 9 OS=Homo sapiens ... [more]
back to top