TCONS_00004023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004023
Unique NameTCONS_00004023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004023 ID=TCONS_00004023|Name=TCONS_00004023|organism=Clytia hemisphaerica|type=transcript|length=1408bp
CAGATatatcccaaattttagtcatttttcaagcaatgttaagaaaaatt
tccttttttgaatttaatattTAAAAGAATAATAGGATGGTACTGGAAGA
AATCTTTCCTAAGCCAACTAGAACAAACTATTGGAGCGAACATGAGAAAT
GGAAATGGACTATCAATCTTTGTATTGGCTCAGTTCTATTATTTTCCACC
AGGAACTCAATGGCCGTATGTGTGCCTGCTATAAGTAAAGAACTTGGATG
GGATAAAGAAATTTCTGGCACTGCTTTGTCATCCTTCTTTGTAGGATACA
TTGGTTCTAACCTAGTTGGTGGTTCTTTTGCAGATCGATTTGGTGGCGCA
AAAACAATTTTGTATTCTTCCCTTGTCTGGTCCTCACTGACTATTGTATT
GCCTATTTTTGCAAATTCACAGGGTATTTTCACATCTAGcaattatgata
tttttgctatTAGATTTTTGACAGGATGCTCTCAAGGTTTTTACTACACT
TCATTTGCTGCCTTGATTTCAAGGTATGTGAGAACTGATGATAAAGGACT
TATTGCTGGTATCGTTTATTCTGGATGTGCTGTTGGTATTATTCTGACCG
GGTTTTTTGGATCACTTTTAATAGAAGCTGGTCATTGGTCTTATGTCTTC
ACAATAAGTGGATTTTCTTCATTGTTATGGCTTATTTGGTTCCAAAACCT
CTCAAGAGAGACAATTCAAAaagaaacaatagaaaatttcaACTCTGGTA
ATGAAGCTGTCGATACCAGGAAATTCATAAAAAGTATACTATGCGAGAGA
TCAATTCTGGCACTTTTAATTGCTTACTTCGGGTCAGGCTGTACATATGG
CGTTTTGAATTCTTGGACCCCTGTATATTTTCATGATATGTTTCCGAACA
GTAAAGGATGGATATTCAATGTTATACCATGGTtgacaagttttattttt
gagcttGTAACTGGATACTTTGCAAATAATCtgctaaaaaatggaaaatc
tgTATTATTTGTACGCAAAACATATGCTGCTTTTCTTTTTCTAGGAACAG
CATTTTTTTCAATACTTTTAACCAAAGTGAAGATATTCGAACATGCTTTA
CTTTTGATGAGCTTAGTCGCTGGATTTTCTGCTTTTGGCTCAAGCTCATT
ATGTCTGAATCCTCAAGATGTTTGTCCAAACAAAGCTGGTTCTTTATATG
GATTAACACATGCTGTAGGATCTTTTGGAGGTACTATTGGTGTTTATCTC
ACTGGACTGGTATTGGAAACCAATAATAACTGGTCATTGATTTTTATTTG
TAATGCAATAATatcaattttatcatttttagtttttcaattATTCGGCT
CCACTAAGCCAATTGATAACTTATAGTACCTTTtggatttttaatttcat
aTAAAGAA
Run BLAST on NCBI

transcript from alignment at sc0000039:316625..319855+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004023 ID=TCONS_00004023|Name=TCONS_00004023|organism=Clytia hemisphaerica|type=transcript|length=3231bp|location=Sequence derived from alignment at sc0000039:316625..319855+ (Clytia hemisphaerica)
CAGATatatcccaaattttagtcatttttcaagcaatgttaagaaaaatt
tccttttttgaatttaatattTAAAAGAATAATAGGATGGTACTGGAAGA
AATCTTTCCTAAGCCAACTAGAACAAACTATTGGAGCGAACATGAGAAAT
GGAAATGGACTATCAATCTTTGTATTGGCTCAGTTCTATTATTTTCCACC
AGGAACTCAATGGCCGTATGTGTGCCTGCTATAAGTAAAGAACTTGGATG
GGATAAAGAAATTTCTGGCACTGCTTTGTCATCCTTCTTTGTAGGATACA
TTGGTTCTAACCTAGTTGGTGGTTCTTTTGCAGATCGATTTGGTGGCGCA
AAAACAATTTTGTATTCTTCCCTTGTCTGGTCCTCACTGACTATTGTATT
GCCTATTTTTGCAAATTCACAGGGTATTTTCACATCTAGcaattatgata
tttttgctatTAGATTTTTGACAGGATGCTCTCAAGGTTTTTACTACACT
TCATTTGCTGCCTTGATTTCAAGGTATGTGAGAACTGATGATAAAGGACT
TATTGCTGGTATCGTTTATTCTGGATGTGCTGTTGGTATTATTCTGACCG
GGTTTTTTGGATCACTTTTAATAGAAGCTGGTCATTGGTCTTATGTCTTC
ACAATAAGTGGATTTTCTTCATTGTTATGGCTTATTTGGTTCCAAAACCT
CTCAAGAGAGACAATTCAAAaagaaacaatagaaaatttcaACTCTGGTA
ATGAAGCTGTCGATACCAGGAAATTCATAAAAAGTATACTATGCGAGAGA
TCAATTCTGGCACTTTTAATTGCTTACTTCGGGTCAGGCTGTACATATGG
CGTTTTGAATTCTTGGACCCCTGTATATTTTCATGATATGTTTCCGAACA
GTAAAGGATGGATATTCAATGTTATACCATGGTtgacaagttttattttt
gagcttGTAACTGGATACTTTGCAAATAATCtgctaaaaaatggaaaatc
tgTATTATTTGTACGCAAAACATATGCTGCTTTTCTTTTTCTAGGAACAG
CATTTTTTTCAATACTTTTAACCAAAGTGAAGATATTCGAACATGCTTTA
CTTTTGATGAGCTTAGTCGCTGGATTTTCTGCTTTTGGCTCAAGCTCATT
ATGTCTGAATCCTCAAGATGTTTGTCCAAACAAAGCTGGTTCTTTATATG
GATTAACACATGCTGTAGGATCTTTTGGAGGTACTATTGGTGTTTATTTT
ACTGGACTGGTATTGGAAACCAATAATAACTGGTCATTGATTTTTGTTTG
TAATGCaataatatcaattttttcttttttagtttttcaattATTCGGCT
CCACTAAGcctattgaaaatttttgaagataatgaaaatgaaaatctcac
AATCCTGATTCTTATTTCATTCAACCTAATGCTTTGAATTGAGTAAATAG
CAAAAAAatgtcaaggattttgcagatAACCCTTTAAATTTGTCTTCAAT
AATAATTCTTATGTTTCTACTGTACTTCACGAGATTGTTTGAGCCAGTgg
gatttctttatttttgtttgcttgtgaTTTACAGTTTTACTTTATTTTAA
GAATAGATTTAGATAGACttaatgaaatatttaaaatctaatttcaatAC
CATATAATAAACTTCCTTTCGGTGCCGCAAAGTTAATTTAGactattttg
gtgaaaagaaTACATTGTGGTTTTCCTGTAAAGTTTCCATCAAAAGATAC
GATTTATGAAGGGGCATAACTCATATATGTTAAATTTATAAATCAACTTG
CTTTTTGTTTTGCGCTTACAAATTAAGGATGAAAACGATTTTGTATGACT
TTCTTGtttaaattttgtattttttataaccACCACTtcgatttttaaag
gttggAAGAATGACAACAGTTGAGATATTTCCTAAACAAACCAAAGGAGA
TTATTGGAATGAAACAAACAAATGGAAATGGACCATCAATCTTTGTGTTG
GCTCAGTTCTATTATTTTCTACTAGAAACTCAATGGCTGTATGTGTACCT
GCTATTAGTAAAGAACTTGCATGGAATAAAGAAATTTCTGGAATGGCTCT
TTCGTCTTTCTTTTTTGGATATGTTGGTTCTAATATTGTCGGTGGTTATT
TTGCAGATCGATTTGGTGGAGCAAAGACAATTTTGTACTCTTCTCTTATA
TGGTCTTCACTGACTTTCATTTTGCCTCATTTTGCAAATTCGCAGGGTAT
TTTCATATCTggtaattttgacatttttgcgATAAGATTTTTAACAGGAT
GTTCTCAAGGTTTTTTCTACCCTTCCTTTGTAGCCTTGATTTCAAGGTAC
GTGAGAACTGATGATAAAGGATTTGTTGTTGGCATTGTTTATTCTGGATG
TGCTATTGGTATTATTCTGACCGGTTTTTTTGGATCACTTTTAATAGAAG
CTGGCCATTGGTCCTATGTTTTTATGATAAGTGGATTTTCTTCATTGCTA
TGGCTTATTTGGTTTCGAAACCTTTCTCGCGAGACGATTCAACAAGAAAC
AGTAGAAAATTTCAACTCTGGAAGTAAATCCACGGATACCACGAAATTCA
TAAAAAGTTTACTCTGCCAGCCATCAATTTGGGCACTTTTAATTGCCTAC
TTTGGATCTGGCTGCACTTATGCTGTATTGAATTCTTGGACCCCTGTATA
TTTTCATGATGTGTTTCCAAACAGTAAAGGATGGGTATTCAATGTCATAC
CATGGTTGACCAGTTTTATCTTTGAGCTTGTAACTGGTTATTATGCAAAT
GGTTTATTGAAAAGTGGAAAATCTGTATTATTTGTTCGAAAAACTTATGC
TGCTATTCTTTTCATTGGAACAGCACTGTTTTCTGTGCTTTTAaccaaag
taaaaattttcgaaCAAGCTTTACTATTGATGAGCTTAGTAGCTGGATTT
TCTGCATTTGGCTCAAGCTCGATATCCATGAATCCTCAAGATGTTTGTCC
AAACAAAGCTGGTTCTTTGTTCGGGCTATCAAACGCTATAGCCTCTTTTG
GAGGTACTATTGGTGTTTATCTCACTGGACTGGTATTGGAAACCAATAAT
AACTGGTCATTGATTTTTATTTGTAATGCAATAATatcaattttatcatt
tttagtttttcaattATTCGGCTCCACTAAGCCAATTGATAACTTATAGT
ACCTTTtggatttttaatttcataTAAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002260XLOC_002260Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004023-exon-sc0000039-1491911889:316625..317854TCONS_00004023-exon-sc0000039-1491911889:316625..317854Clytia hemisphaericaexon
TCONS_00004023-exon-sc0000039-1510915933:316625..317854TCONS_00004023-exon-sc0000039-1510915933:316625..317854Clytia hemisphaericaexon
TCONS_00004023-exon-sc0000039-1575043694:316625..317854TCONS_00004023-exon-sc0000039-1575043694:316625..317854Clytia hemisphaericaexon
TCONS_00004023-exon-sc0000039-1491911889:319678..319855TCONS_00004023-exon-sc0000039-1491911889:319678..319855Clytia hemisphaericaexon
TCONS_00004023-exon-sc0000039-1510915933:319678..319855TCONS_00004023-exon-sc0000039-1510915933:319678..319855Clytia hemisphaericaexon
TCONS_00004023-exon-sc0000039-1575043694:319678..319855TCONS_00004023-exon-sc0000039-1575043694:319678..319855Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:316625..319855 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69044	0.811716	0.968515	0.97584	2.54795	1.93431	3.67829	2.61112	0.803254	2.26984	0.885285	1.63379	1.50851	0.445797	1.24809	2.61213	2.09992	2.1799	1.77448	0.702297	2.82487	1.72423	3.73391	4.71888	1.3189	3.56648	2.10945	1.59443	3.43756	3.7038
Blast
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BLAST of TCONS_00004023 vs. Swiss-Prot (Human)
Match: S17A9 (Solute carrier family 17 member 9 OS=Homo sapiens GN=SLC17A9 PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 1.734e-68
Identity = 143/438 (32.65%), Postives = 229/438 (52.28%), Query Frame = 3 
Query:  108 PKPTRTNY-----WSEHEKWKWTINLCIGSVLLFSTRNSMAVCVPAISKELGWDKEISGTALSSFFVGYIGSNLVGGSFADRFGGAKTILYSSLVWSSLTIVLPIFANSQGIFTSSNYDIFAI--RFLTGCSQGFYYTSFAALISRYVRTDDKGLIAGIVYSGCAVGIILTGFFGSLLIEAGHWSYVFTISGFSSLLWLIWFQN---LSRETI--------QKETIENFNSGNEAVDTRKFIKSILCERSILALLIAYFGSGCTYGVLNSWTPVYFHDMFPNSKGWIFNVIPWLTSFIFELVTGYFANNLLKNGKSVLFVRKTYAAFLFLGTAFFSILLTKVKIFEHALLLMSLVAGFSAFGSSSLCLNPQDVCPNKAGSLYGLTHAVGSFGGTIGVYLTGLVLETNNNWSLIFICNAIISILSFLVFQLFGSTKPID 1367
            P   R +      WS  E   WT  L +G+ LL+  R+SM +C  ++S++ GW+K+ +G  LSSFF GY  + +VGG   DR GG K IL S+  W S+T V P+ A+      SS +  F    R L G  QG Y+ +  +L+S+ VR  ++     IV +G   G +LTG  GSLL+E   W  +F  SG  +LLW +W+     LS + +        Q   +   N     V  R+  +    + ++ A +++   + C++ +L SW P +F + FP++KGWIFNV+PWL +    L +G+ +++L+  G   + VRK         ++ F++ L     F  +++  S   G   F  S + +N QD+ P+ AG L+G+ +  G+  G +GV L G ++ET  +W+ +F   AIIS L    F +FG  + +D
Sbjct:    5 PDEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWNKKEAGIVLSSFFWGYCLTQVVGGHLGDRIGGEKVILLSASAWGSITAVTPLLAH-----LSSAHLAFMTFSRILMGLLQGVYFPALTSLLSQKVRESERAFTYSIVGAGSQFGTLLTGAVGSLLLEWYGWQSIFYFSGGLTLLW-VWYVYRYLLSEKDLILALGVLAQSRPVSRHNR----VPWRRLFR----KPAVWAAVVSQLSAACSFFILLSWLPTFFEETFPDAKGWIFNVVPWLVAIPASLFSGFLSDHLINQGYRAITVRKLMQGMGLGLSSVFALCLGHTSSFCESVVFASASIGLQTFNHSGISVNIQDLAPSCAGFLFGVANTAGALAGVVGVCLGGYLMETTGSWTCLFNLVAIISNLGLCTFLVFGQAQRVD 428
The following BLAST results are available for this feature:
BLAST of TCONS_00004023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S17A91.734e-6832.65Solute carrier family 17 member 9 OS=Homo sapiens ... [more]
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