TCONS_00004020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004020
Unique NameTCONS_00004020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1102

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004020 ID=TCONS_00004020|Name=TCONS_00004020|organism=Clytia hemisphaerica|type=transcript|length=1102bp
GTAAATTTCCCAGCGTCGCTACTTACACAACAAAACTTTATGTTAAGCAG
ATTATATTCTTTTTACCTGATATTGTACTTTGCGGAGCAGATAGAGGATG
ATTTGAATATGATTCAGAGATAATTTGTATTGCAACACGTGTTGAAGTTG
GCTTTGGAGATGATTGAGCTCTAGAGCTGGTACATTTTGTCATTGTATGT
TGCATAGATCTTTCTGATACAGAGGTGTTCGTCATTTCTGGAGATAATGA
TGCAGAGGTGGTTGCGAGTTGTGGAAATAACAACGTAAAGGTGTCTGCGA
GTTGGGGAGTAAATGATGCAGAGGTGGTTGCGAGTTGTGGAGATAACAAC
GTAAAGATGGCTGCGAGCTGGGGAGTAAATGATGCAGAGGTGGTTGCGAG
TTGTGGAGATAACAACGTAAAGGTGGCTGCGAGTTGGGGAGTAAATGATG
CAGAGGTGGTTGCGAGTTGTGGAGATAACAACGTAAAGGTGGCTGCGAGT
TGTGGAGATAACAACGTAGAGGTGGTTGCGAGTTGTGGAGATAACAACGT
AAAGGTGGCTGCGAGTTGTGGAGATAACAACGTAGAGGTGGTTGCGAGTT
GTGGAGTAAATGATGCAGAGGTTGTTGCTAGTTTTGGAGATAATAAGTTA
GAGCTGGTTGTGAATTGTTGAACAACTGATGAAAATTTGTCCATTGGTTT
ATAAGCACCACATTGTTTCCCGATGTATCCACGCAAACAAATACATTTCG
AGGCGTCTTTCCCATCCGTGTCAAACTTATATACTAAACAACCATTATCT
TTgcactgaaaaatatttttacaataacTGTTTGGACAATGTTTCATTCC
ACTTGTCAAACCATAAGGGCATGGACATGTACATGGTGACACAATTCTCC
CCTCGACCAATGACAAAGATGCAGTCACTATCAACAAGATTTTTTGTATG
ACTCTgaacatttttgattttctgaaaaagctagGTAAAAATGATGGATA
AGGTTAATTTCGTTAAAGTAATTTTGCCGTGGGACTCATGCCATAAGTTA
TTTATTCAAGTAATATTGAATCAGGCTTCTTTTCAGGCTTCTTCTTCTTA
AT
Run BLAST on NCBI

transcript from alignment at sc0000039:270053..271220+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004020 ID=TCONS_00004020|Name=TCONS_00004020|organism=Clytia hemisphaerica|type=transcript|length=1168bp|location=Sequence derived from alignment at sc0000039:270053..271220+ (Clytia hemisphaerica)
GTAAATTTCCCAGCGTCGCTACTTACACAACAAAACTTTATGTTAAGCAG
ATTATATTCTTTTTACCTGATATTGTACTTTGCGGAGCAGATAGAGGATG
ATTTGAATATGATTCAGAGATAATTTGTATTGCAACACGTGTTGAAGTTG
GCTTTGGAGATGATTGAGCTCTAGAGCTGGTACATTTTGTCATTGTATGT
TGCATAGATCTTTCTGATACAGAGGTGTTCGTCATTTCTGGAGATAATGA
TGCAGAGGTGGTTGCGAGTTGTGGAAATAACAACGTAAAGGTGTCTGCGA
GTTGGGGAGTAAATGATGCAGAGGTGGTTGCGAGTTGTGGAGATAACAAC
GTAAAGATGGCTGCGAGCTGGGGAGTAAATGATGCAGAGGTGGTTGCGAG
TTGTGGAGATAACAACGTAAAGGTGGCTGCGAGTTGTGGAGTTAACAACG
TAGAGGTGGCTGCGAGTTGGGGAGTAAATGATGCAGAGGTGGTTGCGAGT
TGTGGAGATAACAACGTAAAGGTGGCTGCGAGTTGTGGAGATAACAACGT
AGAGGTGGTTGCGAGTTGTGGAGTAAATGATGCAGAGGTGGTTGCGAGTT
GTGGAGATAACAACGTAAAGGTGGCTGCGAGTTGTGGAGATAACAACGTA
GAGGTGGTTGCGAGTTGTGGAGTAAATGATGCAGAGGTTGTTGCTAGTTT
TGGAGATAATAAGTTAGAGCTGGTTGTGAATTGTTGAACAACTGATGAAA
ATTTGTCCATTGGTTTATAAGCACCACATTGTTTCCCGATGTATCCACGC
AAACAAATACATTTCGAGGCGTCTTTCCCATCCGTGTCAAACTTATATAC
TAAACAACCATTATCTTTgcactgaaaaatatttttacaataacTGTTTG
GACAATGTTTCATTCCACTTGTCAAACCATAAGGGCATGGACATGTACAT
GGTGACACAATTCTCCCCTCGACCAATGACAAAGATGCAGTCACTATCAA
CAAGATTTTTTGTATGACTCTgaacatttttgattttctgaaaaagctag
GTAAAAATGATGGATAAGGTTAATTTCGTTAAAGTAATTTTGCCGTGGGA
CTCATGCCATAAGTTATTTATTCAAGTAATATTGAATCAGGCTTCTTTTC
AGGCTTCTTCTTCTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002258XLOC_002258Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004020-exon-sc0000039-1491911889:270053..270474TCONS_00004020-exon-sc0000039-1491911889:270053..270474Clytia hemisphaericaexon
TCONS_00004020-exon-sc0000039-1510915933:270053..270474TCONS_00004020-exon-sc0000039-1510915933:270053..270474Clytia hemisphaericaexon
TCONS_00004020-exon-sc0000039-1575043694:270053..270474TCONS_00004020-exon-sc0000039-1575043694:270053..270474Clytia hemisphaericaexon
TCONS_00004020-exon-sc0000039-1491911889:270508..270606TCONS_00004020-exon-sc0000039-1491911889:270508..270606Clytia hemisphaericaexon
TCONS_00004020-exon-sc0000039-1510915933:270508..270606TCONS_00004020-exon-sc0000039-1510915933:270508..270606Clytia hemisphaericaexon
TCONS_00004020-exon-sc0000039-1575043694:270508..270606TCONS_00004020-exon-sc0000039-1575043694:270508..270606Clytia hemisphaericaexon
TCONS_00004020-exon-sc0000039-1491911889:270640..271220TCONS_00004020-exon-sc0000039-1491911889:270640..271220Clytia hemisphaericaexon
TCONS_00004020-exon-sc0000039-1510915933:270640..271220TCONS_00004020-exon-sc0000039-1510915933:270640..271220Clytia hemisphaericaexon
TCONS_00004020-exon-sc0000039-1575043694:270640..271220TCONS_00004020-exon-sc0000039-1575043694:270640..271220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:270053..271220 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0397287	0	0	0	0	0	0	0	0	0	0	0	0.128111	0	0	0	0	0.000616324	0.124549	0	0	0	0.0911043	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013032EGF-like_CS
IPR000742EGF-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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