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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004017 ID=TCONS_00004017|Name=TCONS_00004017|organism=Clytia hemisphaerica|type=transcript|length=2577bpRun BLAST on NCBI protein sequence of TCONS_00004017-protein >TCONS_00004017-protein ID=TCONS_00004017-protein|Name=TCONS_00004017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=560bp MVDKSIGSDHDDLQKVFPKVICLVDILMQVDQLITAQAQHKYGSSKTLLNRun BLAST on NCBI transcript from alignment at sc0000039:219380..244830+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004017 ID=TCONS_00004017|Name=TCONS_00004017|organism=Clytia hemisphaerica|type=transcript|length=25451bp|location=Sequence derived from alignment at sc0000039:219380..244830+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000039:219380..244830+ >TCONS_00004017 ID=TCONS_00004017|Name=TCONS_00004017|organism=Clytia hemisphaerica|type=CDS|length=10098bp|location=Sequence derived from alignment at sc0000039:219380..244830+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004017 vs. Swiss-Prot (Human)
Match: AGRG4 (Adhesion G-protein coupled receptor G4 OS=Homo sapiens GN=ADGRG4 PE=2 SV=2) HSP 1 Score: 145.976 bits (367), Expect = 2.107e-35 Identity = 123/381 (32.28%), Postives = 197/381 (51.71%), Query Frame = 1
Query: 1186 KKHNISDAQTSNIVDGNVFAVSIGETSISNLQQPITLLFR----NQTELKANDTCKFWRFAYENDRHHGQWSDEGCHRITTTNITGFIKCQCDHLTNFALIIN---SDQEFYNPYAIQIVTYVGCGISIASLFVTLLVYVFFSKINRKLAPKXXXXXXXXXXXXXXXXXXGAERNA-KTYHVCQLMAVLIHYFTLSTFCWMACESFNLYRNFINIFKRTRNENGILVKMSLFSWGVPLVIVVITMVTSLEEYGN----AYVCVVHGFS-FYYGVLLPVGLITLGNWIVLVLSLRGMRRAKI-LKRSRRKRDQENQQWLHFVRAATCAT-ILGLTWTFGILAVGYLKTTFQWLFCIFNSLQGFAIFLLFVVNNKEAKREIYK 2283
K N++ A T+ +V ++ + I NL P+ + + NQ + + C FW F EN+ G W+ GC ++ TN+ + CQCDHLT+F ++++ S + N + ++TY GCGIS L V ++ Y+ F K+ + K+LI L ++LL+L ++F+I + ++ + VC AV +HYF L +F WM E+ ++Y + +F N IL K L WG+P ++V IT+ + YG C + S FY V+ LI L N + L + K ++++RRK LH ++ T +LGLTW F A G ++ F +LF IFN+LQGF IF+ V KE+ RE ++
Sbjct: 2637 KTKNVTKALTTYVVSASIS----DDMFIQNLADPVVITLQHIGGNQNYGQVH--CAFWDF--ENNNGLGGWNSSGC-KVKETNVN-YTICQCDHLTHFGVLMDLSRSTVDSVNEQILALITYTGCGISSIFLGVAVVTYIAFHKLRKDYPAKILINLCTALLMLNLVFLINSWLSSFQKVGVCITAAVALHYFLLVSFTWMGLEAVHMYLALVKVFN-IYIPNYIL-KFCLVGWGIPAIMVAITVSVKKDLYGTLSPTTPFCWIKDDSIFYISVVAYFCLIFLMNLSMFCTVLVQLNSVKSQIQKTRRK------MILHDLKGTMSLTFLLGLTWGFAFFAWGPMRNFFLYLFAIFNTLQGFFIFVFHCV-MKESVREQWQ 2998 The following BLAST results are available for this feature:
BLAST of TCONS_00004017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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