TCONS_00004016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004016
Unique NameTCONS_00004016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004016 ID=TCONS_00004016|Name=TCONS_00004016|organism=Clytia hemisphaerica|type=transcript|length=2633bp
aagtagacTTCTGGACCATTTTTCTTCTTGATTCAAACTGATTTGTTATC
AAGACTAGAAAGTGACTGGATTATTACCAGTGTATGTAGATTTCACTATA
GTCACACTTAAAGTGCACTTTGGAGGCTCTGCGAGCCTTGCTTCATTTCA
TTCTCTGAATCTGAAGTCAAATTGTTAAAACTAAATTGTGAGAGAAGGTT
ACCACATCGCCAAGCAACGACTTTTTTAGTTTATGACTTTTTAGTTCAAA
TAAATACTGAGATAATCATAAAATGGTTTTGGATTTTACTGGTCGAATCA
TTCAGTTTATCAATTGTCGAATTTTATACAAGGGTGAATTGATTAAAGAA
GACTTTTGGGTTCGAGATGGGATCATTCTCAATCCTGAGAAAGTCTTTTA
TACCGAAAGGGAAGCTGCTCATTTGAAGATTGATTGCAAAAATTTGATCA
TATCACCTGGATTCATTGACGTACAAATTAATGGTggttttggttttgat
ttttcatcgGATGTTTCACGTATAGAAGAAGCAAGAAGTGTGGTTTCCAA
AGAACTTTTACAACATGGCGTCACTTCATACTGTCCAACAATCGTCACGT
CACCACCTGAAGTTTATAAACAAGTACTACCTTATTTAAAACCAAGGTCA
GGTGGCAAACACGGAGCAGAGATCTTAGGTGCTCATCTAGAAGGTCCTTT
TATCAGTAAAGAGAAGAAGGGCGCTCACGATATCAACTACATCAAAAGTG
AGGTAGAAAGCCTCACCACAATCGAAGATGTCTACGGGTCTTTAGATGAT
GTCTCTATCATAACTGTCGCTCCTGAACTTTCTGGAATGATGGAAGTTTT
ACCAAAACTTGTCAAGAAAAATATATCAGTGTCCATTGGTCACTCAGTAT
CTGACGTTGTAAAAGCTGAAACTGCATTTCAGAATGGTGCTTCATTTATC
ACCCATTTGTTCAATGCAATGTTACCTTTCCATCATCGAGATCCTGGTAT
TGTTGGATTGTTAACTAGCGCTCTCATTCCCAAATCTGCTTTCTATGGTA
TGATCGCAGATGGCATTCATACTCATCCAACATCTCTAAGGATTGCATAT
CGAACGCATCCTAAAGGGATTGTTTTGGTGACTGATGCGATCGTAGCCCT
GGGTTTACCGCCTGGTATTCATAAGCTTGGAACGATGGATGTAGAAATCT
TTGACAAGGATGCTCGCATTTTAGGGACTAACACTCTAGCTGGCAGCATA
TGTAGCATGGATAATTGTGTTCGTCATTTCAAGAAAGGTGCAGGCTGTAC
AACTGTCGAAGCTTTGGAGGCTGCAACATTACATCCAGCTCAATTACTTG
GTATTGAAACAGAGAAAGGGACATTAGATTACAACTCTGCAGCAGATTTC
ATTTTCTTATCGGATGATTTAAGAGTTCAAGCCACTTTTATAGCTGGTCT
ACCTGTTTATGTTAATAATGATGAAGTTCAGAGAGAGTTGTCTGAGAAGA
ATTACTTGTAATTTTTATTGGGTAATCGATGTTGGTGAAGATCTTACCGG
ATTTTGGTTTGGCTCCATATTTTTGGTGTGATTTAAACTGAATATGATTT
TCAACATGAAATCGACCTTGCAAAAAGAGTTTCCAGTTGACAGCTTCGAA
TACAATTATTTTGTCAGATGCTATGTTATTGACACATAATATTTTCCCCT
CCTTAAAAGTAATTTATTGGCTCTTTTAGGAGTATGAAGGACTTTATTAC
ATTTATGAGCATTGTTGATTATATGAATTTtaatattgttatttttatat
tGATGTGCATAATATTTTGAATTGAACATATTGTTTGCATTTATCACACC
TTATtatgttttatttgaaaattttatttgaccTGACTTCAATTTGATTT
CAAAAGTGAGAAGGAAAACTTATTGtaaatagaaaaatttatttgtattt
taGTGAAGTTGGTTTCTAATGACAACGCTTTTTATCTTAATTATATTCAC
TACAATACTACTTAGTCTAATGATGTGGTTGCatcttttaaaatgaaaaa
atgtgcTCAAAATTGTCGTATTTGTTTGTTTTCCTAATAAAGACATAAGA
TGATTCGAACTCTCACCAAAGTGCTTTATATCCTTGTTTTATTCCAAACT
TTAAAGGCGGATTCTGAGAAAAATAAGTCTCCAGCGAATGGAGCAAAACT
TGGTTTGATCGGAGATATCTTTTCAGCTTCTACAGAGCCGTTATGTTCGT
ATATTTTACGATTCACTCGAACTTTGAGTCACAAAGATTTGAACCGTCTA
GTGAAATTTGTAGCATTTCAATTGCTTCCTAAAGAGCAAAGACATTTGGA
GGACAGTTTATTGAGTAAACGTGGATTTTATACCATGTTAGGGAGAAGAT
ATCGTCGTTCCTCTTGCAAACTTGCTTGGTATTACTTGAGGAAATTTGCA
AAAAACTCTTTTCGTATGTTTTTGAAATTCATCGATAATCTATCCATTGA
GATTCTTCTGCGTCAGTGAAAGAGATACCATTTTTGTAAACTTTCGTTCT
CTTCCCTCGCTAAAATGTCTATAGTGTTATTTagttttttgtattatttt
gtagacttatttttttgagaatgTAAATAAATG
Run BLAST on NCBI

protein sequence of TCONS_00004016-protein

>TCONS_00004016-protein ID=TCONS_00004016-protein|Name=TCONS_00004016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp
MVLDFTGRIIQFINCRILYKGELIKEDFWVRDGIILNPEKVFYTEREAAH
LKIDCKNLIISPGFIDVQINGGFGFDFSSDVSRIEEARSVVSKELLQHGV
TSYCPTIVTSPPEVYKQVLPYLKPRSGGKHGAEILGAHLEGPFISKEKKG
AHDINYIKSEVESLTTIEDVYGSLDDVSIITVAPELSGMMEVLPKLVKKN
ISVSIGHSVSDVVKAETAFQNGASFITHLFNAMLPFHHRDPGIVGLLTSA
LIPKSAFYGMIADGIHTHPTSLRIAYRTHPKGIVLVTDAIVALGLPPGIH
KLGTMDVEIFDKDARILGTNTLAGSICSMDNCVRHFKKGAGCTTVEALEA
ATLHPAQLLGIETEKGTLDYNSAADFIFLSDDLRVQATFIAGLPVYVNND
EVQRELSEKNYL
Run BLAST on NCBI

transcript from alignment at sc0000039:212766..216667+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004016 ID=TCONS_00004016|Name=TCONS_00004016|organism=Clytia hemisphaerica|type=transcript|length=3902bp|location=Sequence derived from alignment at sc0000039:212766..216667+ (Clytia hemisphaerica)
aagtagacTTCTGGACCATTTTTCTTCTTGATTCAAACTGATTTGTTATC
AAGACTAGAAAGTGACTGGATTATTACCAGTGTATGTAGATTTCACTATA
GTCACACTTAAAGTGCACTTTGGAGGCTCTGCGAGCCTTGCTTCATTTCA
TTCTCTGAATCTGAAGTCAAATTGTTAAAACTAAATTGTGAGAGAAGGTT
ACCACATCGCCAAGCAACGACTTTTTTAGTTTATGACTTTTTAGTTCAAA
TAAATACTGAGATAATCATAAAATGGTTTTGGATTTTACTGGTCGAATCA
TTCAGTTTATCAATTGTCGAATTTTATACAAGGGTGAATTGATTAAAGAA
GACTTTTGGGTTCGAGATGGGATCATTCTCAATCCTGAGAAAGTCTTTTA
TACCGAAAGGGAAGCTGCTCATTTGAAGATTGATTGCAAAAATTTGATCA
TATCACCTGGATTCATTGACGTACAAATTAATGGTATGCCTTTTTGAATT
tcacaattcaaattttgaatttgttttctgAGTTACttttctttaaaatc
tttgacTTTTGTTCTAAACTTCAAGTTCTTTCCATAACCAATTTGTTTTA
ATACAACTGTCTTTATATCATTTGAAATTGTATCAAAGCACTAATTTTGT
ATTGATATCCATGATTAATAATTGTAAAAATTATGCTTCAAATATGCAAG
AGGGTAGTCCAATCTAGACATTTTTCTCTTCAGGTggttttggttttgat
ttttcatcgGATGTTTCACGTATAGAAGAAGCAAGAAGTGTGGTTTCCAA
AGAACTTTTACAACATGGCGTCACTTCATACTGTCCAACAATCGTCACGT
CACCACCTGAAGTTTATAAACAAGTAAGATCATGAACGTGTTCTCGTgtg
gctgaaaaaaaagaagtaatTAACTTCTTTTCCTTTTACTTTTACTTATA
CATCTCTCAATAACCTAACTGAAGGTGCAAGTTACCACTTTTTATGACTT
TCTACTCTCTACCATGGCTTGATATAAGTCAGACAATATGGACAACATGG
GGTGCTTTACAATATTTTAAGGTATCTTATCTTTTTCATATGCGTTTAGT
TTTTTTCAACCTTTAGGTACTACCTTATTTAAAACCAAGGTCAGGTGGCA
AACACGGAGCAGAGATCTTAGGTATACCATATTCCATTCCTCCCTTAACA
TAtagtgaaatttcaaattgtcaagttttagattttttacaaTGTTAATT
AGGATATTATCAtttaaatttcagaaattatGCATTAAATTTCTCCCCAG
TACCAATAGGTTTACTAACATGAACAGGATTCCATAAATTCTTCGTTTCT
CAGGTGCTCATCTAGAAGGTCCTTTTATCAGTAAAGAGAAGAAGGGCGCT
CACGATATCAACTACATCAAAAGTGAGGTAGAAAGCCTCACCACAATCGA
AGATGTCTACGGGTCTTTAGATGATGTCTCTATCATAACTGTCGCTCCTG
AACTTTCTGGAATGATGGAAGTTTTACCAAAACTTGTCAAGAAAAATATA
TCAGTGTCCATTGGTAAGGTATTTGAAATGCTTTCTTAGAAGTTCCTTTT
CAAAATCTCAGTTTGTCAAAGTTGTTCTATATTTGATGATTGAACGATAT
TCAAACATGTAAAAAGAAGAGACTGTAAACTAGGACTGTAAAAGAGACTT
AGTCAGCAATCAGACACTTTCTCAGCAATCAGACACTTTCTCAGCAATCA
GACATTTACCCAAAGCCTCTCATTAACCTATCTTAGGTCACTCAGTATCT
GACGTTGTAAAAGCTGAAACTGCATTTCAGAATGGTGCTTCATTTATCAC
CCATTTGTTCAATGCAATGTTACCTTTCCATCATCGAGATCCTGGTATTG
TTGGATTGTTAACTAGCGCTCTCATTCCCAAATCTGCTTTCTATGGTATG
ATCGCAGATGGCATTCATACTCATCCAACATCTCTAAGGATTGCATATCG
AACGCATCCTAAAGGTATTTGACTAtgctttttttccaaaaaaacttttt
tttaactttagctTGTAGAGTTTTATAATTTTGCTCACGTAAGcttaaaa
attactttcaaccatttttcaaccattttttcAAGGGATTGTTTTGGTGA
CTGATGCGATCGTAGCCCTGGGTTTACCGCCTGGTATTCATAAGCTTGGA
ACGATGGATGTAGAAATCTTTGACAAGGATGCTCGCATTTTAGGGACTAA
CACTCTAGCTGGCAGGTTAGTTGAGCAAGTCTCGTAATTATTACTGACAA
ATAACTTATGTAAATGAATAAGATAGTTCTTCCCTTCGGATTTCTCTCAT
GGTACTGCATGATAGGGTTTTAGTGTCTTTGAATTCTTATCATTTTCCTC
ACACATTTTATTTCAGCATATGTAGCATGGATAATTGTGTTCGTCATTTC
AAGAAAGGTGCAGGTAGGGTGATTTACATATCAACCTTTTTTTGTGATAT
GATTTACAAGTTGTCTATCGTTAATTGTTGACCTTAAACTGGTTTGATAA
TGTCATTTTTAGGCTGTACAACTGTCGAAGCTTTGGAGGCTGCAACATTA
CATCCAGCTCAATTACTTGGTATTGAAACAGAGAAAGGGACATTAGATTA
CAACTCTGCAGCAGATTTCATTTTCTTATCGGATGATTTAAGAGTTCAAG
CCACTTTTATAGCTGGTCTACCTGTTTATGTTAATAATGATGAAGTTCAG
AGAGAGTTGTCTGAGAAGAATTACTTGTAATTTTTATTGGGTAATCGATG
TTGGTGAAGATCTTACCGGATTTTGGTTTGGCTCCATATTTTTGGTGTGA
TTTAAACTGAATATGATTTTCAACATGAAATCGACCTTGCAAAAAGAGTT
TCCAGTTGACAGCTTCGAATACAATTATTTTGTCAGATGCTATGTTATTG
ACACATAATATTTTCCCCTCCTTAAAAGTAATTTATTGGCTCTTTTAGGA
GTATGAAGGACTTTATTACATTTATGAGCATTGTTGATTATATGAATTTt
aatattgttatttttatattGATGTGCATAATATTTTGAATTGAACATAT
TGTTTGCATTTATCACACCTTATtatgttttatttgaaaattttatttga
ccTGACTTCAATTTGATTTCAAAAGTGAGAAGGAAAACTTATTGtaaata
gaaaaatttatttgtattttaGTGAAGTTGGTTTCTAATGACAACGCTTT
TTATCTTAATTATATTCACTACAATACTACTTAGTCTAATGATGTGGTTG
CatcttttaaaatgaaaaaatgtgcTCAAAATTGTCGTATTTGTTTGTTT
TCCTAATAAAGACATAAGATGATTCGAACTCTCACCAAAGTGCTTTATAT
CCTTGTTTTATTCCAAACTTTAAAGGCGGATTCTGAGAAAAATAAGTCTC
CAGCGAATGGAGCAAAACTTGGTTTGATCGGAGATATCTTTTCAGCTTCT
ACAGAGCCGTTATGTTCGTATATTTTACGATTCACTCGAACTTTGAGTCA
CAAAGATTTGAACCGTCTAGTGAAATTTGTAGCATTTCAATTGCTTCCTA
AAGAGCAAAGACATTTGGAGGACAGTTTATTGAGTAAACGTGGATTTTAT
ACCATGTTAGGGAGAAGATATCGTCGTTCCTCTTGCAAACTTGCTTGGTA
TTACTTGAGGAAATTTGCAAAAAACTCTTTTCGTATGTTTTTGAAATTCA
TCGATAATCTATCCATTGAGATTCTTCTGCGTCAGTGAAAGAGATACCAT
TTTTGTAAACTTTCGTTCTCTTCCCTCGCTAAAATGTCTATAGTGTTATT
TagttttttgtattattttgtagacttatttttttgagaatgTAAATAAA
TG

Coding sequence (CDS) from alignment at sc0000039:212766..216667+

>TCONS_00004016 ID=TCONS_00004016|Name=TCONS_00004016|organism=Clytia hemisphaerica|type=CDS|length=9912bp|location=Sequence derived from alignment at sc0000039:212766..216667+ (Clytia hemisphaerica)
ATGGTTTTGGATTTTACTGGTCGAATCATTCAGTTTATCAATTGTCGAAT
TTTATACAAGGGTGAATTGATTAAAGAAGACTTTTGGGTTCGAGATGGGA
TCATTCTCAATCCTGAGAAAGTCTTTTATACCGAAAGGGAAGCTGCTCAT
TTGAAGATTGATTGCAAAAATTTGATCATATCACCTGGATTCATTGACGT
ACAAATTAATGGTggttttggttttgatttttcatcgGATGTTTCACGTA
TAGAAGAAGCAAGAAGTGTGGTTTCCAAAGAACTTTTACAACATGGCGTC
ACTTCATACTGTCCAACAATCGTCACGTCACCACCTGAAGTTTATAAACA
AGTACTACCTTATTTAAAACCAAGGTCAGGTGGCAAACACGGAGCAGAGA
TCTTAGGTGCTCATCTAGAAGGTCCTTTTATCAGTAAAGAGAAGAAGGGC
GCTCACGATATCAACTACATCAAAAGTGAGGTAGAAAGCCTCACCACAAT
CGAAGATGTCTACGGGTCTTTAGATGATGTCTCTATCATAACTGTCGCTC
CTGAACTTTCTGGAATGATGGAAGTTTTACCAAAACTTGTCAAGAAAAAT
ATATCAGTGTCCATTGGTCACTCAGTATCTGACGTTGTAAAAGCTGAAAC
TGCATTTCAGAATGGTGCTTCATTTATCACCCATTTGTTCAATGCAATGT
TACCTTTCCATCATCGAGATCCTGGTATTGTTGGATTGTTAACTAGCGCT
CTCATTCCCAAATCTGCTTTCTATGGTATGATCGCAGATGGCATTCATAC
TCATCCAACATCTCTAAGGATTGCATATCGAACGCATCCTAAAGGGATTG
TTTTGGTGACTGATGCGATCGTAGCCCTGGGTTTACCGCCTGGTATTCAT
AAGCTTGGAACGATGGATGTAGAAATCTTTGACAAGGATGCTCGCATTTT
AGGGACTAACACTCTAGCTGGCAGCATATGTAGCATGGATAATTGTGTTC
GTCATTTCAAGAAAGGTGCAGGCTGTACAACTGTCGAAGCTTTGGAGGCT
GCAACATTACATCCAGCTCAATTACTTGGTATTGAAACAGAGAAAGGGAC
ATTAGATTACAACTCTGCAGCAGATTTCATTTTCTTATCGGATGATTTAA
GAGTTCAAGCCACTTTTATAGCTGGTCTACCTGTTTATGTTAATAATGAT
GAAGTTCAGAGAGAGTTGTCTGAGAAGAATTACTTGTAAATGGTTTTGGA
TTTTACTGGTCGAATCATTCAGTTTATCAATTGTCGAATTTTATACAAGG
GTGAATTGATTAAAGAAGACTTTTGGGTTCGAGATGGGATCATTCTCAAT
CCTGAGAAAGTCTTTTATACCGAAAGGGAAGCTGCTCATTTGAAGATTGA
TTGCAAAAATTTGATCATATCACCTGGATTCATTGACGTACAAATTAATG
GTggttttggttttgatttttcatcgGATGTTTCACGTATAGAAGAAGCA
AGAAGTGTGGTTTCCAAAGAACTTTTACAACATGGCGTCACTTCATACTG
TCCAACAATCGTCACGTCACCACCTGAAGTTTATAAACAAGTACTACCTT
ATTTAAAACCAAGGTCAGGTGGCAAACACGGAGCAGAGATCTTAGGTGCT
CATCTAGAAGGTCCTTTTATCAGTAAAGAGAAGAAGGGCGCTCACGATAT
CAACTACATCAAAAGTGAGGTAGAAAGCCTCACCACAATCGAAGATGTCT
ACGGGTCTTTAGATGATGTCTCTATCATAACTGTCGCTCCTGAACTTTCT
GGAATGATGGAAGTTTTACCAAAACTTGTCAAGAAAAATATATCAGTGTC
CATTGGTCACTCAGTATCTGACGTTGTAAAAGCTGAAACTGCATTTCAGA
ATGGTGCTTCATTTATCACCCATTTGTTCAATGCAATGTTACCTTTCCAT
CATCGAGATCCTGGTATTGTTGGATTGTTAACTAGCGCTCTCATTCCCAA
ATCTGCTTTCTATGGTATGATCGCAGATGGCATTCATACTCATCCAACAT
CTCTAAGGATTGCATATCGAACGCATCCTAAAGGGATTGTTTTGGTGACT
GATGCGATCGTAGCCCTGGGTTTACCGCCTGGTATTCATAAGCTTGGAAC
GATGGATGTAGAAATCTTTGACAAGGATGCTCGCATTTTAGGGACTAACA
CTCTAGCTGGCAGCATATGTAGCATGGATAATTGTGTTCGTCATTTCAAG
AAAGGTGCAGGCTGTACAACTGTCGAAGCTTTGGAGGCTGCAACATTACA
TCCAGCTCAATTACTTGGTATTGAAACAGAGAAAGGGACATTAGATTACA
ACTCTGCAGCAGATTTCATTTTCTTATCGGATGATTTAAGAGTTCAAGCC
ACTTTTATAGCTGGTCTACCTGTTTATGTTAATAATGATGAAGTTCAGAG
AGAGTTGTCTGAGAAGAATTACTTGTAAATGGTTTTGGATTTTACTGGTC
GAATCATTCAGTTTATCAATTGTCGAATTTTATACAAGGGTGAATTGATT
AAAGAAGACTTTTGGGTTCGAGATGGGATCATTCTCAATCCTGAGAAAGT
CTTTTATACCGAAAGGGAAGCTGCTCATTTGAAGATTGATTGCAAAAATT
TGATCATATCACCTGGATTCATTGACGTACAAATTAATGGTggttttggt
tttgatttttcatcgGATGTTTCACGTATAGAAGAAGCAAGAAGTGTGGT
TTCCAAAGAACTTTTACAACATGGCGTCACTTCATACTGTCCAACAATCG
TCACGTCACCACCTGAAGTTTATAAACAAGTACTACCTTATTTAAAACCA
AGGTCAGGTGGCAAACACGGAGCAGAGATCTTAGGTGCTCATCTAGAAGG
TCCTTTTATCAGTAAAGAGAAGAAGGGCGCTCACGATATCAACTACATCA
AAAGTGAGGTAGAAAGCCTCACCACAATCGAAGATGTCTACGGGTCTTTA
GATGATGTCTCTATCATAACTGTCGCTCCTGAACTTTCTGGAATGATGGA
AGTTTTACCAAAACTTGTCAAGAAAAATATATCAGTGTCCATTGGTCACT
CAGTATCTGACGTTGTAAAAGCTGAAACTGCATTTCAGAATGGTGCTTCA
TTTATCACCCATTTGTTCAATGCAATGTTACCTTTCCATCATCGAGATCC
TGGTATTGTTGGATTGTTAACTAGCGCTCTCATTCCCAAATCTGCTTTCT
ATGGTATGATCGCAGATGGCATTCATACTCATCCAACATCTCTAAGGATT
GCATATCGAACGCATCCTAAAGGGATTGTTTTGGTGACTGATGCGATCGT
AGCCCTGGGTTTACCGCCTGGTATTCATAAGCTTGGAACGATGGATGTAG
AAATCTTTGACAAGGATGCTCGCATTTTAGGGACTAACACTCTAGCTGGC
AGCATATGTAGCATGGATAATTGTGTTCGTCATTTCAAGAAAGGTGCAGG
CTGTACAACTGTCGAAGCTTTGGAGGCTGCAACATTACATCCAGCTCAAT
TACTTGGTATTGAAACAGAGAAAGGGACATTAGATTACAACTCTGCAGCA
GATTTCATTTTCTTATCGGATGATTTAAGAGTTCAAGCCACTTTTATAGC
TGGTCTACCTGTTTATGTTAATAATGATGAAGTTCAGAGAGAGTTGTCTG
AGAAGAATTACTTGTAAATGGTTTTGGATTTTACTGGTCGAATCATTCAG
TTTATCAATTGTCGAATTTTATACAAGGGTGAATTGATTAAAGAAGACTT
TTGGGTTCGAGATGGGATCATTCTCAATCCTGAGAAAGTCTTTTATACCG
AAAGGGAAGCTGCTCATTTGAAGATTGATTGCAAAAATTTGATCATATCA
CCTGGATTCATTGACGTACAAATTAATGGTggttttggttttgatttttc
atcgGATGTTTCACGTATAGAAGAAGCAAGAAGTGTGGTTTCCAAAGAAC
TTTTACAACATGGCGTCACTTCATACTGTCCAACAATCGTCACGTCACCA
CCTGAAGTTTATAAACAAGTACTACCTTATTTAAAACCAAGGTCAGGTGG
CAAACACGGAGCAGAGATCTTAGGTGCTCATCTAGAAGGTCCTTTTATCA
GTAAAGAGAAGAAGGGCGCTCACGATATCAACTACATCAAAAGTGAGGTA
GAAAGCCTCACCACAATCGAAGATGTCTACGGGTCTTTAGATGATGTCTC
TATCATAACTGTCGCTCCTGAACTTTCTGGAATGATGGAAGTTTTACCAA
AACTTGTCAAGAAAAATATATCAGTGTCCATTGGTCACTCAGTATCTGAC
GTTGTAAAAGCTGAAACTGCATTTCAGAATGGTGCTTCATTTATCACCCA
TTTGTTCAATGCAATGTTACCTTTCCATCATCGAGATCCTGGTATTGTTG
GATTGTTAACTAGCGCTCTCATTCCCAAATCTGCTTTCTATGGTATGATC
GCAGATGGCATTCATACTCATCCAACATCTCTAAGGATTGCATATCGAAC
GCATCCTAAAGGGATTGTTTTGGTGACTGATGCGATCGTAGCCCTGGGTT
TACCGCCTGGTATTCATAAGCTTGGAACGATGGATGTAGAAATCTTTGAC
AAGGATGCTCGCATTTTAGGGACTAACACTCTAGCTGGCAGCATATGTAG
CATGGATAATTGTGTTCGTCATTTCAAGAAAGGTGCAGGCTGTACAACTG
TCGAAGCTTTGGAGGCTGCAACATTACATCCAGCTCAATTACTTGGTATT
GAAACAGAGAAAGGGACATTAGATTACAACTCTGCAGCAGATTTCATTTT
CTTATCGGATGATTTAAGAGTTCAAGCCACTTTTATAGCTGGTCTACCTG
TTTATGTTAATAATGATGAAGTTCAGAGAGAGTTGTCTGAGAAGAATTAC
TTGTAAATGGTTTTGGATTTTACTGGTCGAATCATTCAGTTTATCAATTG
TCGAATTTTATACAAGGGTGAATTGATTAAAGAAGACTTTTGGGTTCGAG
ATGGGATCATTCTCAATCCTGAGAAAGTCTTTTATACCGAAAGGGAAGCT
GCTCATTTGAAGATTGATTGCAAAAATTTGATCATATCACCTGGATTCAT
TGACGTACAAATTAATGGTggttttggttttgatttttcatcgGATGTTT
CACGTATAGAAGAAGCAAGAAGTGTGGTTTCCAAAGAACTTTTACAACAT
GGCGTCACTTCATACTGTCCAACAATCGTCACGTCACCACCTGAAGTTTA
TAAACAAGTACTACCTTATTTAAAACCAAGGTCAGGTGGCAAACACGGAG
CAGAGATCTTAGGTGCTCATCTAGAAGGTCCTTTTATCAGTAAAGAGAAG
AAGGGCGCTCACGATATCAACTACATCAAAAGTGAGGTAGAAAGCCTCAC
CACAATCGAAGATGTCTACGGGTCTTTAGATGATGTCTCTATCATAACTG
TCGCTCCTGAACTTTCTGGAATGATGGAAGTTTTACCAAAACTTGTCAAG
AAAAATATATCAGTGTCCATTGGTCACTCAGTATCTGACGTTGTAAAAGC
TGAAACTGCATTTCAGAATGGTGCTTCATTTATCACCCATTTGTTCAATG
CAATGTTACCTTTCCATCATCGAGATCCTGGTATTGTTGGATTGTTAACT
AGCGCTCTCATTCCCAAATCTGCTTTCTATGGTATGATCGCAGATGGCAT
TCATACTCATCCAACATCTCTAAGGATTGCATATCGAACGCATCCTAAAG
GGATTGTTTTGGTGACTGATGCGATCGTAGCCCTGGGTTTACCGCCTGGT
ATTCATAAGCTTGGAACGATGGATGTAGAAATCTTTGACAAGGATGCTCG
CATTTTAGGGACTAACACTCTAGCTGGCAGCATATGTAGCATGGATAATT
GTGTTCGTCATTTCAAGAAAGGTGCAGGCTGTACAACTGTCGAAGCTTTG
GAGGCTGCAACATTACATCCAGCTCAATTACTTGGTATTGAAACAGAGAA
AGGGACATTAGATTACAACTCTGCAGCAGATTTCATTTTCTTATCGGATG
ATTTAAGAGTTCAAGCCACTTTTATAGCTGGTCTACCTGTTTATGTTAAT
AATGATGAAGTTCAGAGAGAGTTGTCTGAGAAGAATTACTTGTAAATGGT
TTTGGATTTTACTGGTCGAATCATTCAGTTTATCAATTGTCGAATTTTAT
ACAAGGGTGAATTGATTAAAGAAGACTTTTGGGTTCGAGATGGGATCATT
CTCAATCCTGAGAAAGTCTTTTATACCGAAAGGGAAGCTGCTCATTTGAA
GATTGATTGCAAAAATTTGATCATATCACCTGGATTCATTGACGTACAAA
TTAATGGTggttttggttttgatttttcatcgGATGTTTCACGTATAGAA
GAAGCAAGAAGTGTGGTTTCCAAAGAACTTTTACAACATGGCGTCACTTC
ATACTGTCCAACAATCGTCACGTCACCACCTGAAGTTTATAAACAAGTAC
TACCTTATTTAAAACCAAGGTCAGGTGGCAAACACGGAGCAGAGATCTTA
GGTGCTCATCTAGAAGGTCCTTTTATCAGTAAAGAGAAGAAGGGCGCTCA
CGATATCAACTACATCAAAAGTGAGGTAGAAAGCCTCACCACAATCGAAG
ATGTCTACGGGTCTTTAGATGATGTCTCTATCATAACTGTCGCTCCTGAA
CTTTCTGGAATGATGGAAGTTTTACCAAAACTTGTCAAGAAAAATATATC
AGTGTCCATTGGTCACTCAGTATCTGACGTTGTAAAAGCTGAAACTGCAT
TTCAGAATGGTGCTTCATTTATCACCCATTTGTTCAATGCAATGTTACCT
TTCCATCATCGAGATCCTGGTATTGTTGGATTGTTAACTAGCGCTCTCAT
TCCCAAATCTGCTTTCTATGGTATGATCGCAGATGGCATTCATACTCATC
CAACATCTCTAAGGATTGCATATCGAACGCATCCTAAAGGGATTGTTTTG
GTGACTGATGCGATCGTAGCCCTGGGTTTACCGCCTGGTATTCATAAGCT
TGGAACGATGGATGTAGAAATCTTTGACAAGGATGCTCGCATTTTAGGGA
CTAACACTCTAGCTGGCAGCATATGTAGCATGGATAATTGTGTTCGTCAT
TTCAAGAAAGGTGCAGGCTGTACAACTGTCGAAGCTTTGGAGGCTGCAAC
ATTACATCCAGCTCAATTACTTGGTATTGAAACAGAGAAAGGGACATTAG
ATTACAACTCTGCAGCAGATTTCATTTTCTTATCGGATGATTTAAGAGTT
CAAGCCACTTTTATAGCTGGTCTACCTGTTTATGTTAATAATGATGAAGT
TCAGAGAGAGTTGTCTGAGAAGAATTACTTGTAAATGGTTTTGGATTTTA
CTGGTCGAATCATTCAGTTTATCAATTGTCGAATTTTATACAAGGGTGAA
TTGATTAAAGAAGACTTTTGGGTTCGAGATGGGATCATTCTCAATCCTGA
GAAAGTCTTTTATACCGAAAGGGAAGCTGCTCATTTGAAGATTGATTGCA
AAAATTTGATCATATCACCTGGATTCATTGACGTACAAATTAATGGTggt
tttggttttgatttttcatcgGATGTTTCACGTATAGAAGAAGCAAGAAG
TGTGGTTTCCAAAGAACTTTTACAACATGGCGTCACTTCATACTGTCCAA
CAATCGTCACGTCACCACCTGAAGTTTATAAACAAGTACTACCTTATTTA
AAACCAAGGTCAGGTGGCAAACACGGAGCAGAGATCTTAGGTGCTCATCT
AGAAGGTCCTTTTATCAGTAAAGAGAAGAAGGGCGCTCACGATATCAACT
ACATCAAAAGTGAGGTAGAAAGCCTCACCACAATCGAAGATGTCTACGGG
TCTTTAGATGATGTCTCTATCATAACTGTCGCTCCTGAACTTTCTGGAAT
GATGGAAGTTTTACCAAAACTTGTCAAGAAAAATATATCAGTGTCCATTG
GTCACTCAGTATCTGACGTTGTAAAAGCTGAAACTGCATTTCAGAATGGT
GCTTCATTTATCACCCATTTGTTCAATGCAATGTTACCTTTCCATCATCG
AGATCCTGGTATTGTTGGATTGTTAACTAGCGCTCTCATTCCCAAATCTG
CTTTCTATGGTATGATCGCAGATGGCATTCATACTCATCCAACATCTCTA
AGGATTGCATATCGAACGCATCCTAAAGGGATTGTTTTGGTGACTGATGC
GATCGTAGCCCTGGGTTTACCGCCTGGTATTCATAAGCTTGGAACGATGG
ATGTAGAAATCTTTGACAAGGATGCTCGCATTTTAGGGACTAACACTCTA
GCTGGCAGCATATGTAGCATGGATAATTGTGTTCGTCATTTCAAGAAAGG
TGCAGGCTGTACAACTGTCGAAGCTTTGGAGGCTGCAACATTACATCCAG
CTCAATTACTTGGTATTGAAACAGAGAAAGGGACATTAGATTACAACTCT
GCAGCAGATTTCATTTTCTTATCGGATGATTTAAGAGTTCAAGCCACTTT
TATAGCTGGTCTACCTGTTTATGTTAATAATGATGAAGTTCAGAGAGAGT
TGTCTGAGAAGAATTACTTGTAAATGGTTTTGGATTTTACTGGTCGAATC
ATTCAGTTTATCAATTGTCGAATTTTATACAAGGGTGAATTGATTAAAGA
AGACTTTTGGGTTCGAGATGGGATCATTCTCAATCCTGAGAAAGTCTTTT
ATACCGAAAGGGAAGCTGCTCATTTGAAGATTGATTGCAAAAATTTGATC
ATATCACCTGGATTCATTGACGTACAAATTAATGGTggttttggttttga
tttttcatcgGATGTTTCACGTATAGAAGAAGCAAGAAGTGTGGTTTCCA
AAGAACTTTTACAACATGGCGTCACTTCATACTGTCCAACAATCGTCACG
TCACCACCTGAAGTTTATAAACAAGTACTACCTTATTTAAAACCAAGGTC
AGGTGGCAAACACGGAGCAGAGATCTTAGGTGCTCATCTAGAAGGTCCTT
TTATCAGTAAAGAGAAGAAGGGCGCTCACGATATCAACTACATCAAAAGT
GAGGTAGAAAGCCTCACCACAATCGAAGATGTCTACGGGTCTTTAGATGA
TGTCTCTATCATAACTGTCGCTCCTGAACTTTCTGGAATGATGGAAGTTT
TACCAAAACTTGTCAAGAAAAATATATCAGTGTCCATTGGTCACTCAGTA
TCTGACGTTGTAAAAGCTGAAACTGCATTTCAGAATGGTGCTTCATTTAT
CACCCATTTGTTCAATGCAATGTTACCTTTCCATCATCGAGATCCTGGTA
TTGTTGGATTGTTAACTAGCGCTCTCATTCCCAAATCTGCTTTCTATGGT
ATGATCGCAGATGGCATTCATACTCATCCAACATCTCTAAGGATTGCATA
TCGAACGCATCCTAAAGGGATTGTTTTGGTGACTGATGCGATCGTAGCCC
TGGGTTTACCGCCTGGTATTCATAAGCTTGGAACGATGGATGTAGAAATC
TTTGACAAGGATGCTCGCATTTTAGGGACTAACACTCTAGCTGGCAGCAT
ATGTAGCATGGATAATTGTGTTCGTCATTTCAAGAAAGGTGCAGGCTGTA
CAACTGTCGAAGCTTTGGAGGCTGCAACATTACATCCAGCTCAATTACTT
GGTATTGAAACAGAGAAAGGGACATTAGATTACAACTCTGCAGCAGATTT
CATTTTCTTATCGGATGATTTAAGAGTTCAAGCCACTTTTATAGCTGGTC
TACCTGTTTATGTTAATAATGATGAAGTTCAGAGAGAGTTGTCTGAGAAG
AATTACTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002256XLOC_002256Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004016-proteinTCONS_00004016-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004016-exon-sc0000039-1491911889:212766..213248TCONS_00004016-exon-sc0000039-1491911889:212766..213248Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1510915933:212766..213248TCONS_00004016-exon-sc0000039-1510915933:212766..213248Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1575043694:212766..213248TCONS_00004016-exon-sc0000039-1575043694:212766..213248Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1491911889:213499..213638TCONS_00004016-exon-sc0000039-1491911889:213499..213638Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1510915933:213499..213638TCONS_00004016-exon-sc0000039-1510915933:213499..213638Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1575043694:213499..213638TCONS_00004016-exon-sc0000039-1575043694:213499..213638Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1491911889:213882..213936TCONS_00004016-exon-sc0000039-1491911889:213882..213936Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1510915933:213882..213936TCONS_00004016-exon-sc0000039-1510915933:213882..213936Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1575043694:213882..213936TCONS_00004016-exon-sc0000039-1575043694:213882..213936Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1491911889:214119..214328TCONS_00004016-exon-sc0000039-1491911889:214119..214328Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1510915933:214119..214328TCONS_00004016-exon-sc0000039-1510915933:214119..214328Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1575043694:214119..214328TCONS_00004016-exon-sc0000039-1575043694:214119..214328Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1491911889:214552..214779TCONS_00004016-exon-sc0000039-1491911889:214552..214779Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1510915933:214552..214779TCONS_00004016-exon-sc0000039-1510915933:214552..214779Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1575043694:214552..214779TCONS_00004016-exon-sc0000039-1575043694:214552..214779Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1491911889:214901..215030TCONS_00004016-exon-sc0000039-1491911889:214901..215030Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1510915933:214901..215030TCONS_00004016-exon-sc0000039-1510915933:214901..215030Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1575043694:214901..215030TCONS_00004016-exon-sc0000039-1575043694:214901..215030Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1491911889:215182..215228TCONS_00004016-exon-sc0000039-1491911889:215182..215228Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1510915933:215182..215228TCONS_00004016-exon-sc0000039-1510915933:215182..215228Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1575043694:215182..215228TCONS_00004016-exon-sc0000039-1575043694:215182..215228Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1491911889:215328..216667TCONS_00004016-exon-sc0000039-1491911889:215328..216667Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1510915933:215328..216667TCONS_00004016-exon-sc0000039-1510915933:215328..216667Clytia hemisphaericaexon
TCONS_00004016-exon-sc0000039-1575043694:215328..216667TCONS_00004016-exon-sc0000039-1575043694:215328..216667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:212766..216667 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.01027	3.76792	5.33608	4.36124	18.7704	14.2867	15.9756	16.7882	12.7898	12.6036	9.01558	8.42185	5.88905	5.86312	6.20818	6.60882	10.4598	12.4102	6.00555	5.89364	9.15566	8.96613	6.51118	7.62836	6.64705	8.21831	4.07399	2.09897	4.02872	2.87986
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003764GlcNAc_6-P_deAcase
IPR011059Metal-dep_hydrolase_composite
IPR006680Amidohydro-rel
IPR032466Metal_Hydrolase
Vocabulary: Biological Process
TermDefinition
GO:0006044N-acetylglucosamine metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008448N-acetylglucosamine-6-phosphate deacetylase activity
GO:0016810hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006044 N-acetylglucosamine metabolic process
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
molecular_function GO:0008448 N-acetylglucosamine-6-phosphate deacetylase activity
Blast
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BLAST of TCONS_00004016 vs. Swiss-Prot (Human)
Match: NAGA (N-acetylglucosamine-6-phosphate deacetylase OS=Homo sapiens GN=AMDHD2 PE=1 SV=2)

HSP 1 Score: 466.848 bits (1200), Expect = 8.460e-156
Identity = 226/399 (56.64%), Postives = 290/399 (72.68%), Query Frame = 3 
Query:  294 RIIQFINCRILYKGELIKEDFWVRDGIILNPEKVFYTEREAAHLKIDCKNLIISPGFIDVQINGGFGFDFSSDVSRIEEARSVVSKELLQHGVTSYCPTIVTSPPEVYKQVLPYLKPRSGGKHGAEILGAHLEGPFISKEKKGAHDINYIKS-EVESLTTIEDVYGSLDDVSIITVAPELSGMMEVLPKLVKKNISVSIGHSVSDVVKAETAFQNGASFITHLFNAMLPFHHRDPGIVGLLTSALIP--KSAFYGMIADGIHTHPTSLRIAYRTHPKGIVLVTDAIVALGLPPGIHKLGTMDVEIFDKDARILGTNTLAGSICSMDNCVRHFKKGAGCTTVEALEAATLHPAQLLGIETEKGTLDYNSAADFIFLSDDLRVQATFIAGLPVYVNNDEVQ 1481
            R++QF NCRIL  G+L++ED WVR G IL+PEK+F+ ER  A  + DC   I++PGFIDVQINGGFG DFS     +    ++V++ +L HGVTS+CPT+VTSPPEVY +V+P +  +SGG HGA +LG HLEGPFIS+EK+GAH   +++S E ++   +   YG LD+V I+T+APEL    EV+  L  + I VS+GHSV+D+  AE A  +GA+FITHLFNAMLPFHHRDPGIVGLLTS  +P  +  FYGMIADG HT+P +LRIA+R HP+G+VLVTDAI ALGL  G H LG  +VE+    A + GT TL+GSI  MD CVRHF +  GC+   ALEAA+LHPAQLLG+E  KGTLD+ + ADF+ L D L VQAT+I+G  V+  +   Q
Sbjct:   11 RVLQFTNCRILRGGKLLREDLWVRGGRILDPEKLFFEERRVADERRDCGGRILAPGFIDVQINGGFGVDFSQATEDVGSGVALVARRILSHGVTSFCPTLVTSPPEVYHKVVPQIPVKSGGPHGAGVLGLHLEGPFISREKRGAHPEAHLRSFEADAFQDLLATYGPLDNVRIVTLAPELGRSHEVIRALTARGICVSLGHSVADLRAAEDAVWSGATFITHLFNAMLPFHHRDPGIVGLLTSDRLPAGRCIFYGMIADGTHTNPAALRIAHRAHPQGLVLVTDAIPALGLGNGRHTLGQQEVEVDGLTAYVAGTKTLSGSIAPMDVCVRHFLQATGCSMESALEAASLHPAQLLGLEKSKGTLDFGADADFVVLDDSLHVQATYISGELVWQADAARQ 409
The following BLAST results are available for this feature:
BLAST of TCONS_00004016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NAGA8.460e-15656.64N-acetylglucosamine-6-phosphate deacetylase OS=Hom... [more]
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