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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004014 ID=TCONS_00004014|Name=TCONS_00004014|organism=Clytia hemisphaerica|type=transcript|length=5018bpRun BLAST on NCBI transcript from alignment at sc0000039:167268..198609+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004014 ID=TCONS_00004014|Name=TCONS_00004014|organism=Clytia hemisphaerica|type=transcript|length=31342bp|location=Sequence derived from alignment at sc0000039:167268..198609+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004014 vs. Swiss-Prot (Human)
Match: DYH7 (Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2) HSP 1 Score: 2055.03 bits (5323), Expect = 0.000e+0 Identity = 1005/1617 (62.15%), Postives = 1279/1617 (79.10%), Query Frame = 1
Query: 4 LEDVDSLLNTGEVPNLFAVDEKAELIELVRGSAIAQAADKNAEFSPLALFNFFVNRCKENLHILLCMSPIGSQFTNSLRKFPSLISCCTIDWFQQWPEDALEMVANKFLEKIEMNDQERKNVVPICQSFHTAALKYSERFLNEAGRHNYVTPTSYLELISAFKKLLSQKREEIWTNKMRYEGGLDKLAFAASQVADMQIELEDLQPKLVVASXXXXXXXXXXXXXSAVAESQQQIVAEDEAVANQQAGESQALKDXXXXXXXXXXXXXXXXXXXXNTLKPADITIVKSMKSPPPGVRLVMSAICVMKDLKPDRINDPSGSGKKIPDYWGPSLKMLGDMNFLNSLREFDKDNIPPAIIKKIRTEFITNPEFDPVKVRNASTAAEGLCRWVQAMEIYDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRAELAEIEDKVQTLKNQFQEMTDKKAQLEFQVDLCAKKLDRAEKLIGGLGGEKQRWSAAAKNLQKIYDNLTGDVLVSSGVIAYLGAFTSSFRKECCNQWTKLCLTLGINCSKDFSLSKVLGEPIKIRAWNIAGLPTDSFSVDNGVIVDNSRRWPLMIDPQGQANKWVKNSEKENQLSVVKLSDADYMRTLENSIQFGTPVLIENVGXXXXXXXXXXXXKQIFKQGGVICIRLGENVIEYSADFKLYITTKLRNPHYLPEIATKVTIVNFMITPEGLEDQLLGIVVAKERPELEEERQALIVQSAANKKQLSEIEDKILQTLSSSEGNILEDESAITILDSSKVLSDDINKKQEIAEETEKKINQSRAGYYPIAVHSSILFFSITDLPNIDPMYQYSLTWFVNLFIAAIQDSNKSKILDKRLRYLTDYFTYSLYCNVCRSLFEKDKLLFSFILCSNILKAKKELDEKEFMFFLTGGVGLENKIPNPGTPWLTDKSWDELCRMCDFQSFKGFRDDFTKNVGEWQKFFEGKEPHRQILPAPWHEKLSDFQRMMVVRCLRPDKVVPMVTTFVEEKLGRRFIEPPPFDLAKSYADSNQCSPLIFILSPGADPMAGLMKFANDKGFSGDRFNAISLGQGQGPIAAKMIADAVKNGTWVVLQNCHLAVSWMPTLEKICEDMSPETVSSDFRLWLTSYPSPKFPVTVLQNGVKMTNEPPTGLRQNLLQSYISDPISDPDFFAGCPGKEVSWEKLLFGLCFFHAVVQERRKFGPMGWNISYGFNESDLRISIRQLQMFINEYNDVPFDAITYMTGQCNYGGRVTDDLDRRCLMSILADFYTADIIKDPKYKLSASGIYFAPPKGIYEDYIDFIKDLPTTQTPEVFGMHDNVDIAKDLQETRGLFDSVLLTFSQSSGGASGKTDDTLKEIATDILSKLPQDFDLEEAQEKYPVRYEESMNTVLVQEMERFNRLLSVIRSSLVNLQKAIKGLVVMSVSLEQVASSALVGKVPDLWAKSSYPSLKPLGSYVADFIARIKFLQDWFEDGKPPTFWLSGFYFTQAFLTGAKQNYARKYTIPIDLLGFDFKVIAKETMDEPPEDGVYVNGLFLEGARWDWDKGVLAESYPKILHDTMPVIWVKPGKMSEIKERKVYTCPVYKTSERKGTLSTTGHSTNYVMPLILDTEIDQRHWVKRGVALLCGLD 4854
LEDV +LLN GE+PNLFA+DEK E+ + +R + K + SP+ALFN F++ C+ LH++L MSPIG F N LRKFP+L++CCTIDWFQ WPEDAL+ VA++FLE+IEM+++ R + +C+SFHT+ + S+ F E R+NYVTPTSYLELIS FK LL +KR E+ K RYE GL+KL A+SQVA MQ+ELE L P+L VAS+E ++MM +IEKES ++IV DE +AN+QA S+A+KDEC+A+LA A+P LE+A++AL+TL DIT+VKSMKSPP GV+LVM AIC++K +K D+I DP+GSGKKI D+WGP+ ++LGDM FL SL E+DKDNIPPA + IR +I NP+F P K+RNASTAAEGLC+WV AM+ YD+VAK+VAPKK KL AE L M+ L K+A L E++DK+ L++ + KKA LE QVDLC+KKL+RAE+LIGGLGGEK RWS A L ++Y NLTGD+L+SSGV+AYLGAFTS++R+ +WT LC I CS D SL LGE + IR WNIAGLP+DSFS+DNG+I+ N+RRWPLMIDPQ QANKW+KN EK N L V+KLS+ DY+RTLEN IQFGTPVL+ENVGEELDP LEPLLLKQ FKQGG CIRLG++ IEY+ DF+ YITTKLRNPHYLPE + KVT++NFMITPEG++DQLLGIVVA+ERP+LEEE+QALI+Q A NK+QL EIEDKIL+ LSSSEGNILEDE+AI IL SSK L+++I++KQE+AEETEKKI+ +R GY PIA+HSSILFFS+ DL NI+PMYQYSLTWF+NLFI +I++S KS+IL KRL+ L D+FTYSLY NVCRSLFEKDKLLFSF L N+L ++ +++ E+ F LTGG+GL+N N T WL KSWDE+CR+ D +FK R +F + W+K ++ EPH ++ P W +K ++FQRM+++RCLRPDKV+PM+ F+ +LGR FIEPPPFDLAK++ DSN C+PLIF+LSPGADPMA L+KFA+D+G+ G + +++SLGQGQGPIA KM+ AVK GTWVVLQNCHLA SWMPTLEK+CE++SPE+ DFR+WLTSYPSP FPV+VLQNGVKMTNE P GLR N+++SY+ DPISDP+FF C E ++KLL+GLCFFHA+VQERRKFGP+GWNI Y FNE+DLRIS++QL MF+N+Y ++P++A+ YMTG+CNYGGRVTDD DRR L SIL F+ +++++ YK +SGIYF PP G ++ YI++ K LP T PE+FGM+ N DI KD ET+ LFD++LLT S+S+G + +D+ + E+A+DIL KLP +FD+E A +YP Y +SMNTVLVQEM RFN+LL IR S VN+QKAIKGL VMS LE+V SS L K+P++W SYPSLKPLGSYV DF+AR+KFLQ W+E G PP FWLSGF+FTQAFLTGA+QNYARKYTIPIDLLGFD++V+ + PPEDGV+++GLFL+GA W+ LAES+PKIL+DT+PV+W+KP K ++I +R Y P+YKTSER+G LSTTGHSTN+V+ + L ++ + HW+ RGVALLC L+
Sbjct: 2409 LEDVSNLLNAGEIPNLFALDEKQEICDKMRQLDRQRDKTKQTDGSPIALFNMFIDHCRSQLHVVLAMSPIGDAFRNRLRKFPALVNCCTIDWFQSWPEDALQAVASRFLEEIEMSEEIRDGCIDMCKSFHTSTIDLSKSFFVELQRYNYVTPTSYLELISTFKLLLEKKRSEVMKMKKRYEVGLEKLDSASSQVATMQMELEALHPQLKVASKEVDEMMIMIEKESVEVAKTEKIVKADETIANEQAMASKAIKDECDADLAGALPILESALAALDTLTAQDITVVKSMKSPPAGVKLVMEAICILKGIKADKIPDPTGSGKKIEDFWGPAKRLLGDMRFLQSLHEYDKDNIPPAYMNIIRKNYIPNPDFVPEKIRNASTAAEGLCKWVIAMDSYDKVAKIVAPKKIKLAAAEGELKIAMDGLRKKQAALKEVQDKLARLQDTLELNKQKKADLENQVDLCSKKLERAEQLIGGLGGEKTRWSHTALELGQLYINLTGDILISSGVVAYLGAFTSTYRQNQTKEWTTLCKGRDIPCSDDCSLMGTLGEAVTIRTWNIAGLPSDSFSIDNGIIIMNARRWPLMIDPQSQANKWIKNMEKANSLYVIKLSEPDYVRTLENCIQFGTPVLLENVGEELDPILEPLLLKQTFKQGGSTCIRLGDSTIEYAPDFRFYITTKLRNPHYLPETSVKVTLLNFMITPEGMQDQLLGIVVAQERPDLEEEKQALILQGAENKRQLKEIEDKILEVLSSSEGNILEDETAIKILSSSKALANEISQKQEVAEETEKKIDTTRMGYRPIAIHSSILFFSLADLANIEPMYQYSLTWFINLFILSIENSEKSEILAKRLQILKDHFTYSLYVNVCRSLFEKDKLLFSFCLTINLLLHERAINKAEWRFLLTGGIGLDNPYANLCT-WLPQKSWDEICRLDDLPAFKTIRREFMRLKDGWKKVYDSLEPHHEVFPEEWEDKANEFQRMLIIRCLRPDKVIPMLQEFIINRLGRAFIEPPPFDLAKAFGDSNCCAPLIFVLSPGADPMAALLKFADDQGYGGSKLSSLSLGQGQGPIAMKMLEKAVKEGTWVVLQNCHLATSWMPTLEKVCEELSPESTHPDFRMWLTSYPSPNFPVSVLQNGVKMTNEAPKGLRANIIRSYLMDPISDPEFFGSCKKPE-EFKKLLYGLCFFHALVQERRKFGPLGWNIPYEFNETDLRISVQQLHMFLNQYEELPYEALRYMTGECNYGGRVTDDWDRRTLRSILNKFFNPELVENSDYKFDSSGIYFVPPSGDHKSYIEYTKTLPLTPAPEIFGMNANADITKDQSETQLLFDNILLTQSRSAGAGAKSSDEVVNEVASDILGKLPNNFDIEAAMRRYPTTYTQSMNTVLVQEMGRFNKLLKTIRDSCVNIQKAIKGLAVMSTDLEEVVSSILNVKIPEMWMGKSYPSLKPLGSYVNDFLARLKFLQQWYEVGPPPVFWLSGFFFTQAFLTGAQQNYARKYTIPIDLLGFDYEVMEDKEYKHPPEDGVFIHGLFLDGASWNRKIKKLAESHPKILYDTVPVMWLKPCKRADIPKRPSYVAPLYKTSERRGVLSTTGHSTNFVIAMTLPSDQPKEHWIGRGVALLCQLN 4023 The following BLAST results are available for this feature:
BLAST of TCONS_00004014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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