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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004003 ID=TCONS_00004003|Name=TCONS_00004003|organism=Clytia hemisphaerica|type=transcript|length=2738bpRun BLAST on NCBI protein sequence of TCONS_00004003-protein >TCONS_00004003-protein ID=TCONS_00004003-protein|Name=TCONS_00004003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=715bp MGGKGGGGGDNVRVVVRCRPLNDKEKNVMKCTIAVKCDEARGSVTVQQSARun BLAST on NCBI transcript from alignment at sc0000039:63326..80704+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004003 ID=TCONS_00004003|Name=TCONS_00004003|organism=Clytia hemisphaerica|type=transcript|length=17379bp|location=Sequence derived from alignment at sc0000039:63326..80704+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000039:63326..80704+ >TCONS_00004003 ID=TCONS_00004003|Name=TCONS_00004003|organism=Clytia hemisphaerica|type=CDS|length=40812bp|location=Sequence derived from alignment at sc0000039:63326..80704+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004003 vs. Swiss-Prot (Human)
Match: KIF3A (Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3A PE=1 SV=4) HSP 1 Score: 784.637 bits (2025), Expect = 0.000e+0 Identity = 444/680 (65.29%), Postives = 543/680 (79.85%), Query Frame = 3
Query: 96 DNVRVVVRCRPLNDKEKNVMKCTIAVKCDEARGSVTVQQSASRSSDPPKVFTFDRVFGPESKQTDVYNDAARAIVEGVLEGYNGTIFAYGQTGTGKTFTMEGVRSEPNLRGIIPNSFAHIFGFISKLDGETKFLVRVSYLEIYNENVRDLLGKDQNATLEVKERPDVGVYVKDLSAYVVNNADDMDKTMSLGNKNRSVGATNMNAESSRSHAIFTIILERSEKGPDGQQHLRMGKLHMVDLAGSERQAKTGATGDRLKEANKINLSLSTLGNVISALVDGKSTHIPYRNSKLTRLLQDSLGGNSKTVMIANMGPAGYNMDETISTLRYXXXXXXXXXXXXXXEDPKDALLRQFQSEIEKLKQQLQXXXXXXXXXXXXXXXXXXXXXXXXXKQVRKVKKKPARCLSPETVKKIKDQIDSERKALLEQKNLAEDEKSKVERELQKREKELNKTQDXXXXXXXXXXXXXXXXIVGGVNLLEKDAEQQRLLDESAKELEARHQRXXXXXXXXXXXXXXXXXXXXXYANLKEEAAGKTKKLKKVWTMLMSAKSEMADIQEEHQRENEDLLESVRSASKEDKFLQLVMDNYIPKEYQEMIQQGMIWNEETGEWQLRYVAYTGNNMRKLPQSPEKDKEVVDALDLSSVFLTYNP--------GIPQDGGSGKKSRPKTARAK-SARP 2108
DNV+VVVRCRPLN++EK+ M AV DE RG++TV ++ S S++PPK FTFD VFGPESKQ DVYN AR I++ VLEGYNGTIFAYGQTGTGKTFTMEGVR+ P LRGIIPNSFAHIFG I+K +G+T+FLVRVSYLEIYNE VRDLLGKDQ LEVKERPDVGVY+KDLSAYVVNNADDMD+ M+LG+KNRSVGATNMN SSRSHAIFTI +E SEKG DG H+RMGKLH+VDLAGSERQAKTGATG RLKEA KINLSLSTLGNVISALVDGKSTH+PYRNSKLTRLLQDSLGGNSKT+M AN+GPA YN DETISTLRYANRAKNIKNKA+INEDPKDALLRQFQ EIE+LK++L++G EED++ E GE ++ K++ + +SP+ + +++ +ID ERKAL + ++ E+E++K EL+KREK+L K Q E + L +KL ++E K+IVGGV+LL K EQ++LL+ES ELE R +R +L+++LEE+E E++DIEEKY +L+EEA GKTKKLKKVWTMLM+AKSEMAD+Q+EHQRE E LLE++R S+E + L++DN+IP++YQEMI+ + WNE+ GEWQL+ VAYTGNNMRK P+K ++ +DLS V+L Y + + S K+RPKT R K SA+P
Sbjct: 13 DNVKVVVRCRPLNEREKS-MCYKQAVSVDEMRGTITVHKTDS-SNEPPKTFTFDTVFGPESKQLDVYNLTARPIIDSVLEGYNGTIFAYGQTGTGKTFTMEGVRAIPELRGIIPNSFAHIFGHIAKAEGDTRFLVRVSYLEIYNEEVRDLLGKDQTQRLEVKERPDVGVYIKDLSAYVVNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGIDGNMHVRMGKLHLVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKKKLEEGEEISGSDISGSEEDDDEEGEVGEDGEKRKKRRGKKKVSPDKMIEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAEQLRRELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPRDYQEMIENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVPDKKEKDPFEVDLSHVYLAYTEESLRQSLMKLERPRTSKGKARPKTGRRKRSAKP 690 The following BLAST results are available for this feature:
BLAST of TCONS_00004003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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