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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003997 ID=TCONS_00003997|Name=TCONS_00003997|organism=Clytia hemisphaerica|type=transcript|length=1427bp
ttgatcacgtgactaTTAGGGTCACGTGGGCCTataaattcttttgtatt
ttgattttacacTCACTTAGTATTTAGACGTCGAATAGAACGGAACAAAA
AGTAAATACAGTCCGTGATCTACCACAATGGTCCAACGACcggatgaaaa
aaaagaaaatagaatagaaaaagaaatcaaataaaaagataattatttgG
TTATTGGAAtagaaaactttgttttgaaatttggagtGGTTTGATTTATA
GACTCCCCCCTTGGATGTATATTTTGTGGAGAGTATGAAattgttgattt
ttgatttatctGGAATTGAAATGTTCAAAGTTTGATATTTGAGATTGTTG
ATTTACTGGATAAAGAGAAATTTGTTTGGTGTTGCTGATTGATTACACCT
ATCtggaaattgaaatattcaaagagattgaaatttgaaattgttgATTT
CTAGAGTCAGAGAATTTTTTTACGAACTATTTGTCGAGAAATTGCTGAAG
TAGGTACCCCCCACCTCTGTTGAAACACTATGGCTGAGCAGAACTTAAAG
AGAATGAAACGCAGACGCACTGCAAACAAGAATGTATTGACAGGACTTTT
GGTGAAAGCAAAGGATGGGCTCCAAAAGGAATATAATGACGATTTAAAGG
TCGAATTGCAAACATTATTGAGAACTATTCAAGAACAAGAGGCAACAGTG
AAAGCCTTAGACAAtgatattttaaatttaatcgaaGAGGATGACGAATT
AGAGACAGATTTGAAAACATCCGTCGATTTCGGAATTGATGTTACGACGG
GAATCACAAAGATAATTAACTTCTTGAAGAAAAATAGTATTGATACGTTG
AGCTCGAGCAGTGGGAGTAGTAGTGGTAGGAAAGCGACGACAAAGCTTCC
TAAATtaactttacaaaaatttaaCGGAGACTCTCTGAAGTGGAAACCGT
TCCTTGATTCTTTCAACATAGCGGTCGGAGAAAATGATGAATTGTCAGGA
GTGGAAAAAATGAACTATTTGAAATCCCTCCTCACAGAAAAAGCCGAACA
AACCATCTCGGGACTTGCACTTTCAAACGAAAATTATCCTATAGCAATGA
AACTCTTAGAAGAACGATTTGGAGACGAGCAAATCATTATCTCATCCCAC
ATGAACAAACTGTTAGAATTACCCAAAATTATGAACGTGAAAGACATTAT
TGGGTTGAGAATTCTTTACGATACGGCGGAATCACAAATTAGAAGCCTTC
AAGCATTTGGTCTACTCGTGAAAAACTACGGACCTTTACTCGTACCTGTT
ATTCTTTCGAAATTACCGGACAGTTTGAAACTTATTATCAGTCAAAAGTC
AGATTCAGACATTTGGGACGCAGAgaacattttgaaagttttgcaaAAGG
AAATTCTTGCACGTGAAAAACTTAACA Run BLAST on NCBI protein sequence of TCONS_00003997-protein >TCONS_00003997-protein ID=TCONS_00003997-protein|Name=TCONS_00003997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MAEQNLKRMKRRRTANKNVLTGLLVKAKDGLQKEYNDDLKVELQTLLRTI
QEQEATVKALDNDILNLIEEDDELETDLKTSVDFGIDVTTGITKIINFLK
KNSIDTLSSSSGSSSGRKATTKLPKLTLQKFNGDSLKWKPFLDSFNIAVG
ENDELSGVEKMNYLKSLLTEKAEQTISGLALSNENYPIAMKLLEERFGDE
QIIISSHMNKLLELPKIMNVKDIIGLRILYDTAESQIRSLQAFGLLVKNY
GPLLVPVILSKLPDSLKLIISQKSDSDIWDAENILKVLQKEILAREKLN Run BLAST on NCBI transcript from alignment at sc0000038:542242..543668 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003997 ID=TCONS_00003997|Name=TCONS_00003997|organism=Clytia hemisphaerica|type=transcript|length=1427bp|location=Sequence derived from alignment at sc0000038:542242..543668 (Clytia hemisphaerica)
TGTTAAGTTTTTCACGTGCAAGAATTTCCTTttgcaaaactttcaaaatg
ttcTCTGCGTCCCAAATGTCTGAATCTGACTTTTGACTGATAATAAGTTT
CAAACTGTCCGGTAATTTCGAAAGAATAACAGGTACGAGTAAAGGTCCGT
AGTTTTTCACGAGTAGACCAAATGCTTGAAGGCTTCTAATTTGTGATTCC
GCCGTATCGTAAAGAATTCTCAACCCAATAATGTCTTTCACGTTCATAAT
TTTGGGTAATTCTAACAGTTTGTTCATGTGGGATGAGATAATGATTTGCT
CGTCTCCAAATCGTTCTTCTAAGAGTTTCATTGCTATAGGATAATTTTCG
TTTGAAAGTGCAAGTCCCGAGATGGTTTGTTCGGCTTTTTCTGTGAGGAG
GGATTTCAAATAGTTCATTTTTTCCACTCCTGACAATTCATCATTTTCTC
CGACCGCTATGTTGAAAGAATCAAGGAACGGTTTCCACTTCAGAGAGTCT
CCGttaaatttttgtaaagttaATTTAGGAAGCTTTGTCGTCGCTTTCCT
ACCACTACTACTCCCACTGCTCGAGCTCAACGTATCAATACTATTTTTCT
TCAAGAAGTTAATTATCTTTGTGATTCCCGTCGTAACATCAATTCCGAAA
TCGACGGATGTTTTCAAATCTGTCTCTAATTCGTCATCCTCttcgattaa
atttaaaatatcaTTGTCTAAGGCTTTCACTGTTGCCTCTTGTTCTTGAA
TAGTTCTCAATAATGTTTGCAATTCGACCTTTAAATCGTCATTATATTCC
TTTTGGAGCCCATCCTTTGCTTTCACCAAAAGTCCTGTCAATACATTCTT
GTTTGCAGTGCGTCTGCGTTTCATTCTCTTTAAGTTCTGCTCAGCCATAG
TGTTTCAACAGAGGTGGGGGGTACCTACTTCAGCAATTTCTCGACAAATA
GTTCGTAAAAAAATTCTCTGACTCTAGAAATcaacaatttcaaatttcaa
tctctttgaatatttcaatttccaGATAGGTGTAATCAATCAGCAACACC
AAACAAATTTCTCTTTATCCAGTAAATCAACAATCTCAAATATCAAACTT
TGAACATTTCAATTCCagataaatcaaaaatcaacaatTTCATACTCTCC
ACAAAATATACATCCAAGGGGGGAGTCTATAAATCAAACCactccaaatt
tcaaaacaaagttttctaTTCCAATAACcaaataattatctttttatttg
atttctttttctattctattttcttttttttcatccgGTCGTTGGACCAT
TGTGGTAGATCACGGACTGTATTTACTTTTTGTTCCGTTCTATTCGACGT
CTAAATACTAAGTGAgtgtaaaatcaaaatacaaaagaatttatAGGCCC
ACGTGACCCTAAtagtcacgtgatcaa Coding sequence (CDS) from alignment at sc0000038:542242..543668 >TCONS_00003997 ID=TCONS_00003997|Name=TCONS_00003997|organism=Clytia hemisphaerica|type=CDS|length=897bp|location=Sequence derived from alignment at sc0000038:542242..543668 (Clytia hemisphaerica)
GTTAAGTTTTTCACGTGCAAGAATTTCCTTttgcaaaactttcaaaatgt
tcTCTGCGTCCCAAATGTCTGAATCTGACTTTTGACTGATAATAAGTTTC
AAACTGTCCGGTAATTTCGAAAGAATAACAGGTACGAGTAAAGGTCCGTA
GTTTTTCACGAGTAGACCAAATGCTTGAAGGCTTCTAATTTGTGATTCCG
CCGTATCGTAAAGAATTCTCAACCCAATAATGTCTTTCACGTTCATAATT
TTGGGTAATTCTAACAGTTTGTTCATGTGGGATGAGATAATGATTTGCTC
GTCTCCAAATCGTTCTTCTAAGAGTTTCATTGCTATAGGATAATTTTCGT
TTGAAAGTGCAAGTCCCGAGATGGTTTGTTCGGCTTTTTCTGTGAGGAGG
GATTTCAAATAGTTCATTTTTTCCACTCCTGACAATTCATCATTTTCTCC
GACCGCTATGTTGAAAGAATCAAGGAACGGTTTCCACTTCAGAGAGTCTC
CGttaaatttttgtaaagttaATTTAGGAAGCTTTGTCGTCGCTTTCCTA
CCACTACTACTCCCACTGCTCGAGCTCAACGTATCAATACTATTTTTCTT
CAAGAAGTTAATTATCTTTGTGATTCCCGTCGTAACATCAATTCCGAAAT
CGACGGATGTTTTCAAATCTGTCTCTAATTCGTCATCCTCttcgattaaa
tttaaaatatcaTTGTCTAAGGCTTTCACTGTTGCCTCTTGTTCTTGAAT
AGTTCTCAATAATGTTTGCAATTCGACCTTTAAATCGTCATTATATTCCT
TTTGGAGCCCATCCTTTGCTTTCACCAAAAGTCCTGTCAATACATTCTTG
TTTGCAGTGCGTCTGCGTTTCATTCTCTTTAAGTTCTGCTCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003997-exon-sc0000038-1491911889:542242..543668 | TCONS_00003997-exon-sc0000038-1491911889:542242..543668 | Clytia hemisphaerica | exon |
| TCONS_00003997-exon-sc0000038-1510915933:542242..543668 | TCONS_00003997-exon-sc0000038-1510915933:542242..543668 | Clytia hemisphaerica | exon |
| TCONS_00003997-exon-sc0000038-1575043694:542242..543668 | TCONS_00003997-exon-sc0000038-1575043694:542242..543668 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:542242..543668 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005312 | DUF1759 |
Blast
The following BLAST results are available for this feature:
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